Wall clock time and date at job start Mon Mar 30 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38969 * 119.58876 * 2 1 4 4 C 1.36464 * 120.62792 * 180.30867 * 3 2 1 5 5 C 1.39953 * 119.63421 * 359.40529 * 4 3 2 6 6 C 1.45927 * 134.02942 * 180.28375 * 5 4 3 7 7 C 1.50706 * 126.10770 * 0.03386 * 6 5 4 8 8 C 1.50692 * 109.46946 * 90.00263 * 7 6 5 9 9 H 1.07999 * 120.00248 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99554 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00242 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46962 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47148 * 119.99850 * 12 10 8 15 15 H 1.48494 * 109.47470 * 239.99882 * 12 10 8 16 16 N 1.30237 * 107.78420 * 180.02562 * 6 5 4 17 17 N 1.39872 * 110.08761 * 359.97438 * 16 6 5 18 18 C 1.46497 * 125.46593 * 179.97438 * 17 16 6 19 19 C 1.37041 * 109.07856 * 0.02562 * 17 16 6 20 20 C 1.36587 * 119.59709 * 179.69429 * 2 1 3 21 21 H 1.08999 * 109.46928 * 270.30401 * 1 2 3 22 22 H 1.08995 * 109.47435 * 30.31331 * 1 2 3 23 23 H 1.09003 * 109.46719 * 150.31240 * 1 2 3 24 24 H 1.08000 * 119.68787 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.18642 * 179.68707 * 4 3 2 26 26 H 1.09003 * 109.47025 * 210.00533 * 7 6 5 27 27 H 1.08998 * 109.46950 * 330.00213 * 7 6 5 28 28 H 0.97005 * 119.99992 * 180.02562 * 11 10 8 29 29 H 1.08994 * 109.47192 * 89.97378 * 18 17 16 30 30 H 1.09003 * 109.47694 * 209.98163 * 18 17 16 31 31 H 1.09002 * 109.47138 * 329.97502 * 18 17 16 32 32 H 1.08005 * 120.07390 * 359.97311 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.2085 0.0000 4 6 3.5576 1.2332 -0.0063 5 6 4.2716 0.0295 -0.0002 6 6 5.6914 -0.3075 0.0012 7 6 6.8367 0.6720 -0.0035 8 6 7.2186 1.0050 1.4157 9 1 6.6857 0.5523 2.2388 10 6 8.2485 1.8876 1.6635 11 7 8.8979 2.4384 0.6612 12 14 8.7215 2.3009 3.4227 13 1 7.8435 1.5549 4.3596 14 1 10.1367 1.9173 3.6580 15 1 8.5600 3.7596 3.6491 16 7 5.7920 -1.6060 0.0073 17 7 4.5194 -2.1864 0.0108 18 6 4.2412 -3.6247 0.0174 19 6 3.5744 -1.1939 0.0061 20 6 2.1816 -1.1876 0.0063 21 1 -0.3633 0.0055 1.0276 22 1 -0.3634 0.8871 -0.5187 23 1 -0.3633 -0.8928 -0.5090 24 1 1.6414 2.1369 -0.0004 25 1 4.0836 2.1765 -0.0114 26 1 7.6912 0.2294 -0.5154 27 1 6.5343 1.5821 -0.5214 28 1 9.6227 3.0591 0.8355 29 1 4.1734 -3.9770 1.0466 30 1 3.2978 -3.8147 -0.4946 31 1 5.0454 -4.1527 -0.4952 32 1 1.6362 -2.1199 0.0117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260739061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:50 Heat of formation + Delta-G solvation = 52.327402 kcal Electronic energy + Delta-G solvation = -15246.214699 eV Core-core repulsion = 12785.653014 eV Total energy + Delta-G solvation = -2460.561685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.12425 -38.49182 -35.85112 -34.35395 -32.65870 -31.15532 -30.74719 -27.50171 -27.01828 -25.06504 -23.25797 -22.07916 -20.43079 -18.58138 -17.84352 -17.48419 -16.53365 -16.36118 -15.96723 -15.00814 -14.78115 -14.50920 -14.39813 -14.21585 -13.72694 -13.47084 -13.31885 -12.93555 -12.75061 -12.69813 -12.53338 -12.13071 -12.08164 -11.81921 -11.58848 -11.37936 -10.67409 -10.62699 -9.35563 -8.69730 -8.22831 -6.37006 0.07761 0.63839 1.38035 1.39250 1.51586 1.63266 1.64730 2.40133 2.89024 3.07140 3.63137 3.67542 3.88942 4.06443 4.34555 4.41927 4.44769 4.46438 4.62626 4.71473 4.85427 4.92027 4.96572 5.05969 5.19635 5.32230 5.39535 5.54058 5.66953 5.70179 5.71086 6.03040 6.10090 6.29938 6.70156 6.85215 7.30636 8.86434 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.007291 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.899055 B = 3839.485258 C = 4398.666034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.037 4.037 3 C -0.164 4.164 4 C -0.047 4.047 5 C -0.214 4.214 6 C 0.119 3.881 7 C 0.101 3.899 8 C -0.527 4.527 9 H 0.044 0.956 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.969 3.031 13 H -0.272 1.272 14 H -0.274 1.274 15 H -0.268 1.268 16 N -0.307 5.307 17 N -0.426 5.426 18 C 0.107 3.893 19 C 0.116 3.884 20 C -0.152 4.152 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.119 0.881 26 H 0.010 0.990 27 H 0.029 0.971 28 H 0.269 0.731 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 -6.562 -1.085 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 C -0.183 4.183 4 C -0.067 4.067 5 C -0.222 4.222 6 C -0.058 4.058 7 C 0.062 3.938 8 C -0.566 4.566 9 H 0.063 0.937 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.199 1.199 15 H -0.193 1.193 16 N -0.120 5.120 17 N -0.215 5.215 18 C -0.033 4.033 19 C 0.000 4.000 20 C -0.174 4.174 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.170 0.830 25 H 0.137 0.863 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.751 -7.690 -1.139 18.467 hybrid contribution 0.621 0.837 0.667 1.237 sum -16.130 -6.852 -0.472 17.531 Atomic orbital electron populations 1.20869 0.87533 1.04312 1.03604 1.19909 0.98035 0.91421 0.94603 1.20850 0.92501 0.99296 1.05700 1.20584 0.94922 0.95787 0.95433 1.20202 0.92063 0.95479 1.14466 1.24240 0.95004 0.91632 0.94891 1.17520 0.88400 0.90497 0.97381 1.21120 1.17464 1.26500 0.91517 0.93719 1.25838 0.95523 0.95268 1.02020 1.70063 1.22956 1.30492 1.32852 0.85350 0.78133 0.78418 0.78850 1.19656 1.19913 1.19315 1.76513 1.02690 1.09829 1.22937 1.48508 1.00693 1.06749 1.65501 1.21980 1.03864 0.73753 1.03726 1.19259 0.92822 0.88120 0.99784 1.19931 0.87891 1.00230 1.09359 0.89731 0.89908 0.89926 0.83049 0.86297 0.97189 0.95308 0.92187 0.90709 0.86992 0.89509 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.98 71.24 0.71 -0.83 16 2 C -0.04 -0.91 5.85 -20.07 -0.12 -1.03 16 3 C -0.16 -4.69 9.61 22.03 0.21 -4.47 16 4 C -0.05 -1.78 10.07 22.27 0.22 -1.56 16 5 C -0.21 -9.51 6.33 -20.24 -0.13 -9.64 16 6 C 0.12 6.12 6.62 44.79 0.30 6.42 16 7 C 0.10 5.81 5.57 29.10 0.16 5.97 16 8 C -0.53 -31.75 9.09 25.60 0.23 -31.52 16 9 H 0.04 2.73 7.74 -2.91 -0.02 2.71 16 10 C 0.01 0.73 5.46 84.66 0.46 1.19 16 11 N -0.92 -56.06 13.29 21.45 0.28 -55.77 16 12 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 N -0.31 -15.01 12.40 -43.69 -0.54 -15.55 16 17 N -0.43 -16.48 4.05 -361.05 -1.46 -17.94 16 18 C 0.11 2.66 11.40 127.77 1.46 4.11 16 19 C 0.12 4.36 6.87 39.21 0.27 4.63 16 20 C -0.15 -4.21 9.58 22.13 0.21 -3.99 16 21 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 23 H 0.08 0.93 8.07 -2.39 -0.02 0.91 16 24 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 25 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.07 282.24 5.40 -68.67 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.10 Total: 3.88 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 3.99 Total: -30.72 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.72 Total: -89.26 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.07 5.40 -68.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.998 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds