Wall clock time and date at job start Mon Mar 30 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40927 * 126.23805 * 2 1 4 4 C 1.40501 * 132.98518 * 0.07495 * 3 2 1 5 5 C 1.37988 * 119.63464 * 179.97438 * 4 3 2 6 6 N 1.39942 * 119.85096 * 179.97438 * 5 4 3 7 7 C 1.39564 * 120.29926 * 359.97438 * 5 4 3 8 8 C 1.37858 * 120.62852 * 0.06214 * 7 5 4 9 9 C 1.38930 * 120.12974 * 359.92333 * 8 7 5 10 10 N 1.38275 * 132.62272 * 180.02562 * 9 8 7 11 11 C 1.46496 * 125.61966 * 359.94379 * 10 9 8 12 12 C 1.38300 * 108.76488 * 180.20619 * 10 9 8 13 13 C 1.39921 * 125.68852 * 179.75022 * 12 10 9 14 14 H 1.07999 * 119.99955 * 134.41044 * 13 12 10 15 15 C 1.40188 * 120.00258 * 314.41159 * 13 12 10 16 16 N 1.30749 * 120.00031 * 153.58145 * 15 13 12 17 17 Si 1.86795 * 119.99739 * 333.58786 * 15 13 12 18 18 H 1.48501 * 109.47286 * 95.56177 * 17 15 13 19 19 H 1.48507 * 109.47000 * 215.55959 * 17 15 13 20 20 H 1.48500 * 109.47482 * 335.55877 * 17 15 13 21 21 H 1.09001 * 109.47235 * 89.99533 * 1 2 3 22 22 H 1.08994 * 109.47783 * 210.00360 * 1 2 3 23 23 H 1.09004 * 109.47284 * 330.00370 * 1 2 3 24 24 H 1.07997 * 120.18052 * 359.93406 * 4 3 2 25 25 H 0.97008 * 120.00071 * 359.97438 * 6 5 4 26 26 H 0.96997 * 120.00184 * 179.97438 * 6 5 4 27 27 H 1.07993 * 119.68361 * 180.02562 * 7 5 4 28 28 H 1.08003 * 119.92727 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47245 * 84.00591 * 11 10 9 30 30 H 1.08996 * 109.47646 * 204.00747 * 11 10 9 31 31 H 1.09000 * 109.47271 * 324.00814 * 11 10 9 32 32 H 0.97004 * 119.99983 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.1367 0.0000 4 6 2.0773 2.5169 0.0013 5 6 3.1280 3.4114 0.0015 6 7 2.8715 4.7872 0.0023 7 6 4.4453 2.9504 0.0008 8 6 4.7163 1.5987 -0.0013 9 6 3.6753 0.6787 -0.0011 10 7 3.6475 -0.7037 -0.0024 11 6 4.8209 -1.5807 -0.0055 12 6 2.3293 -1.1222 -0.0062 13 6 1.8951 -2.4523 -0.0134 14 1 1.1045 -2.7659 0.6521 15 6 2.4864 -3.3779 -0.8846 16 7 2.4935 -4.6496 -0.5806 17 14 3.2642 -2.7945 -2.4795 18 1 4.7233 -2.6047 -2.2783 19 1 3.0387 -3.8090 -3.5403 20 1 2.6492 -1.5061 -2.8880 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.0587 2.8757 0.0016 25 1 1.9567 5.1100 0.0023 26 1 3.6084 5.4179 0.0027 27 1 5.2600 3.6593 0.0013 28 1 5.7400 1.2545 -0.0022 29 1 5.1782 -1.7133 1.0157 30 1 4.5492 -2.5498 -0.4240 31 1 5.6085 -1.1317 -0.6106 32 1 2.9023 -5.2901 -1.1835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:17 Heat of formation + Delta-G solvation = 31.795827 kcal Electronic energy + Delta-G solvation = -15818.497026 eV Core-core repulsion = 13357.045025 eV Total energy + Delta-G solvation = -2461.452001 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71481 -38.39756 -35.48698 -34.38924 -33.97687 -30.79488 -29.70521 -29.45305 -26.68594 -25.13040 -22.78297 -21.78568 -20.18689 -19.35189 -17.62212 -17.27846 -17.03852 -16.79580 -15.83746 -15.14498 -15.04582 -14.78191 -14.31444 -14.19821 -13.78666 -13.54750 -13.42536 -13.24059 -13.13586 -12.74338 -12.52093 -12.17124 -12.02913 -11.82333 -11.38945 -11.03153 -10.38944 -9.91782 -8.89971 -8.34279 -7.68827 -6.40459 0.47604 1.11477 1.20557 1.23576 1.38577 1.94170 2.07937 2.33851 3.00560 3.30048 3.35829 4.07453 4.11018 4.41024 4.44243 4.65038 4.69051 4.74975 4.83426 4.92790 5.13449 5.19677 5.23751 5.28529 5.44866 5.50588 5.71483 5.80293 6.02772 6.13688 6.33801 6.44408 6.69739 6.89000 6.98012 7.14029 7.30805 8.20415 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.009408 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.023881 B = 2975.370733 C = 3381.811710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.334 4.334 3 C -0.032 4.032 4 C -0.218 4.218 5 C 0.195 3.805 6 N -0.874 5.874 7 C -0.208 4.208 8 C -0.081 4.081 9 C -0.015 4.015 10 N -0.510 5.510 11 C 0.076 3.924 12 C 0.253 3.747 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.837 5.837 17 Si 0.918 3.082 18 H -0.236 1.236 19 H -0.265 1.265 20 H -0.277 1.277 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.113 0.887 25 H 0.400 0.600 26 H 0.404 0.596 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 11.357 -1.451 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.340 4.340 3 C -0.037 4.037 4 C -0.243 4.243 5 C 0.091 3.909 6 N -0.417 5.417 7 C -0.230 4.230 8 C -0.102 4.102 9 C -0.118 4.118 10 N -0.198 5.198 11 C -0.065 4.065 12 C 0.145 3.855 13 C -0.538 4.538 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.465 5.465 17 Si 0.741 3.259 18 H -0.160 1.160 19 H -0.190 1.190 20 H -0.202 1.202 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.131 0.869 25 H 0.229 0.771 26 H 0.233 0.767 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.446 10.840 -1.467 12.219 hybrid contribution -0.080 -0.182 -0.523 0.560 sum 5.365 10.658 -1.990 12.097 Atomic orbital electron populations 1.19578 0.90304 0.99865 0.99379 1.19903 0.95478 0.90800 1.27784 1.18041 0.92362 0.93121 1.00162 1.19881 0.97734 0.90341 1.16318 1.17414 0.92760 0.85034 0.95653 1.42203 1.10764 1.02012 1.86727 1.20330 0.94988 0.94291 1.13388 1.19966 0.96398 0.91802 1.02075 1.18584 0.96036 0.83141 1.14032 1.44882 1.05867 1.04031 1.65048 1.22037 0.86831 0.94709 1.02951 1.18003 0.81247 0.93502 0.92702 1.18227 1.21151 0.90988 1.23443 0.91042 1.26295 0.93189 0.94129 1.00521 1.69751 1.36134 1.03976 1.36636 0.86437 0.80890 0.79203 0.79414 1.15954 1.19024 1.20182 0.94321 0.94130 0.92718 0.86888 0.77139 0.76713 0.83984 0.85517 0.91205 0.91041 0.89663 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.50 10.16 71.24 0.72 -0.77 16 2 C -0.33 -16.85 6.26 -18.99 -0.12 -16.97 16 3 C -0.03 -1.48 6.08 -21.35 -0.13 -1.61 16 4 C -0.22 -8.59 9.95 22.76 0.23 -8.36 16 5 C 0.20 6.40 6.74 38.11 0.26 6.66 16 6 N -0.87 -19.90 9.10 -51.36 -0.47 -20.37 16 7 C -0.21 -6.63 9.87 22.50 0.22 -6.41 16 8 C -0.08 -2.98 9.96 22.35 0.22 -2.75 16 9 C -0.02 -0.68 6.81 39.01 0.27 -0.42 16 10 N -0.51 -24.22 2.79 -529.85 -1.48 -25.70 16 11 C 0.08 3.05 9.22 127.77 1.18 4.23 16 12 C 0.25 13.37 5.12 38.74 0.20 13.57 16 13 C -0.50 -28.10 9.05 23.15 0.21 -27.89 16 14 H 0.07 4.32 8.01 -2.91 -0.02 4.29 16 15 C 0.07 3.89 4.31 85.33 0.37 4.26 16 16 N -0.84 -44.14 13.92 21.87 0.30 -43.84 16 17 Si 0.92 41.09 25.03 68.60 1.72 42.80 16 18 H -0.24 -9.38 6.03 99.48 0.60 -8.78 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.80 7.87 -2.39 -0.02 1.78 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 25 H 0.40 7.83 8.84 -92.70 -0.82 7.01 16 26 H 0.40 6.94 8.84 -92.71 -0.82 6.12 16 27 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 3.06 3.63 -2.39 -0.01 3.05 16 31 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.29 13.84 8.29 -92.71 -0.77 13.07 16 Total: -1.00 -63.01 266.85 3.10 -59.91 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.59 Total: 23.65 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 3.62 Total: -36.45 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -1.64 Total: -89.91 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.72 Total: 42.80 kcal Total: -63.01 3.10 -59.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds