Wall clock time and date at job start Mon Mar 30 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47382 * 2 1 4 4 N 1.30205 * 126.16498 * 269.97648 * 3 2 1 5 5 N 1.39815 * 110.16224 * 180.02562 * 4 3 2 6 6 C 1.46499 * 125.38835 * 180.26447 * 5 4 3 7 7 C 1.36763 * 109.22663 * 359.97438 * 5 4 3 8 8 C 1.39863 * 133.41263 * 180.02562 * 7 5 4 9 9 C 1.35851 * 120.34875 * 180.02562 * 8 7 5 10 10 C 1.41229 * 120.58478 * 359.96309 * 9 8 7 11 11 C 1.41336 * 120.03499 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00158 * 154.94778 * 11 10 9 13 13 C 1.39873 * 120.00090 * 334.94781 * 11 10 9 14 14 N 1.30884 * 119.99996 * 342.08214 * 13 11 10 15 15 Si 1.86800 * 119.99988 * 162.07683 * 13 11 10 16 16 H 1.48493 * 109.47173 * 94.64733 * 15 13 11 17 17 H 1.48498 * 109.47215 * 214.64542 * 15 13 11 18 18 H 1.48500 * 109.47186 * 334.64314 * 15 13 11 19 19 C 1.40229 * 119.93221 * 0.02562 * 10 9 8 20 20 C 1.39365 * 119.30907 * 359.97438 * 19 10 9 21 21 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47473 * 300.00308 * 1 2 3 23 23 H 1.09000 * 109.47066 * 60.00066 * 1 2 3 24 24 H 1.08998 * 109.47473 * 239.99691 * 2 1 3 25 25 H 1.09008 * 109.46993 * 119.99679 * 2 1 3 26 26 H 1.08997 * 109.47327 * 269.69380 * 6 5 4 27 27 H 1.09011 * 109.46752 * 29.69038 * 6 5 4 28 28 H 1.08999 * 109.47122 * 149.68646 * 6 5 4 29 29 H 1.07999 * 119.82713 * 359.95864 * 8 7 5 30 30 H 1.08003 * 119.70530 * 179.97438 * 9 8 7 31 31 H 0.96999 * 120.00377 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.34497 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2890 2.1451 -1.0512 5 7 2.7374 3.4120 -0.6657 6 6 3.1144 4.4929 -1.5799 7 6 2.7624 3.4848 0.6997 8 6 3.1181 4.4922 1.6023 9 6 3.0405 4.2734 2.9408 10 6 2.5997 3.0284 3.4410 11 6 2.5239 2.8132 4.8359 12 1 1.8424 2.0750 5.2322 13 6 3.3316 3.5563 5.7031 14 7 4.3849 4.1815 5.2419 15 14 2.9068 3.6564 7.5194 16 1 3.6635 2.6172 8.2627 17 1 3.2692 4.9993 8.0392 18 1 1.4500 3.4323 7.7001 19 6 2.2382 2.0056 2.5524 20 6 2.3192 2.2340 1.1800 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 4.1782 4.4226 -1.8067 27 1 2.5397 4.4058 -2.5021 28 1 2.9056 5.4546 -1.1111 29 1 3.4573 5.4488 1.2332 30 1 3.3182 5.0586 3.6284 31 1 4.9448 4.6971 5.8432 32 1 1.8998 1.0511 2.9277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260771510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:23 Heat of formation + Delta-G solvation = 66.730206 kcal Electronic energy + Delta-G solvation = -15403.996551 eV Core-core repulsion = 12944.059419 eV Total energy + Delta-G solvation = -2459.937132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01412 -36.22815 -34.13114 -33.14612 -31.08314 -29.52112 -28.58725 -26.19524 -24.74478 -22.74768 -21.37944 -20.49082 -18.58904 -17.40333 -15.84196 -15.24033 -15.05549 -14.66611 -13.85780 -13.71866 -13.45760 -12.86002 -12.72791 -12.39507 -12.07825 -11.83088 -11.65340 -11.19787 -11.19088 -10.97571 -10.78191 -10.72632 -10.23085 -10.17133 -9.69289 -9.38810 -9.14766 -8.62392 -7.36479 -6.89743 -6.65859 -4.24383 2.22902 2.79180 3.08619 3.12699 3.21133 3.32512 3.56080 3.95537 4.58056 5.12325 5.32789 5.48469 5.56091 5.68698 5.73859 5.79962 5.84230 5.94464 6.06002 6.18557 6.35194 6.54090 6.58449 6.83024 6.85099 7.04518 7.21148 7.40427 7.62022 7.70626 7.96308 8.08259 8.20915 8.52967 8.66385 8.89546 8.93234 10.21787 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.007670 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.698584 B = 3649.906985 C = 4421.949443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C 0.067 3.933 4 N -0.279 5.279 5 N -0.420 5.420 6 C 0.124 3.876 7 C 0.036 3.964 8 C -0.139 4.139 9 C -0.083 4.083 10 C 0.088 3.912 11 C -0.463 4.463 12 H 0.078 0.922 13 C 0.075 3.925 14 N -0.806 5.806 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.189 4.189 20 C -0.125 4.125 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.279 0.721 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -1.028 -5.337 6.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.109 4.109 4 N -0.094 5.094 5 N -0.213 5.213 6 C -0.018 4.018 7 C -0.074 4.074 8 C -0.161 4.161 9 C -0.104 4.104 10 C 0.085 3.915 11 C -0.494 4.494 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.433 5.433 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.212 4.212 20 C -0.132 4.132 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.625 -0.690 -6.615 7.150 hybrid contribution 0.126 0.341 1.605 1.646 sum -2.499 -0.349 -5.010 5.609 Atomic orbital electron populations 1.21692 0.94842 1.01171 1.02345 1.19801 0.95655 0.89201 1.02636 1.23242 1.01386 0.96301 0.89977 1.76087 1.17518 0.91524 1.24300 1.47422 1.60838 1.09948 1.03069 1.21388 0.99774 0.87571 0.93091 1.18522 1.08194 0.97661 0.83070 1.19486 1.07619 0.96283 0.92726 1.21134 0.98566 0.98017 0.92674 1.17426 0.90765 0.90109 0.93204 1.19430 1.20103 1.19125 0.90716 0.90376 1.25854 0.93337 0.93559 1.01327 1.69818 1.10467 1.25248 1.37766 0.86333 0.80177 0.78322 0.82090 1.19660 1.20160 1.18481 1.20336 1.13020 0.98519 0.89283 1.19459 1.07161 0.92807 0.93734 0.92544 0.92144 0.92937 0.91188 0.90107 0.92818 0.90963 0.90829 0.88827 0.85417 0.90972 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.03 -0.55 6.53 -27.88 -0.18 -0.73 16 3 C 0.07 1.42 6.70 -80.11 -0.54 0.88 16 4 N -0.28 -5.99 12.39 34.88 0.43 -5.56 16 5 N -0.42 -8.92 4.04 -65.29 -0.26 -9.19 16 6 C 0.12 1.95 11.38 59.85 0.68 2.63 16 7 C 0.04 0.84 6.87 -83.97 -0.58 0.27 16 8 C -0.14 -3.25 9.89 -39.83 -0.39 -3.65 16 9 C -0.08 -2.09 8.60 -39.30 -0.34 -2.43 16 10 C 0.09 2.31 5.57 -106.84 -0.59 1.72 16 11 C -0.46 -12.07 9.03 -37.79 -0.34 -12.41 16 12 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 13 C 0.08 1.86 5.12 -17.34 -0.09 1.77 16 14 N -0.81 -20.46 10.98 55.54 0.61 -19.85 16 15 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 19 C -0.19 -4.69 9.86 -38.41 -0.38 -5.07 16 20 C -0.12 -2.99 6.32 -105.21 -0.66 -3.66 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 29 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.13 3.27 6.16 -52.48 -0.32 2.94 16 31 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 32 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 277.66 15.07 4.18 4.18 Total: -1.00 -29.20 277.66 -7.21 -36.42 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.10 Total: 2.97 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.05 Total: -22.35 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.78 Total: -34.60 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.20 -7.21 -36.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260771510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.145 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds