Wall clock time and date at job start Mon Mar 30 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38773 * 119.77162 * 2 1 4 4 C 1.36606 * 120.66644 * 179.97438 * 3 2 1 5 5 C 1.39744 * 119.88602 * 0.02562 * 4 3 2 6 6 N 1.35777 * 133.59854 * 179.97438 * 5 4 3 7 7 C 1.30111 * 109.64642 * 180.02562 * 6 5 4 8 8 C 1.50696 * 124.95566 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46841 * 335.02665 * 8 7 6 10 10 C 1.53002 * 109.47256 * 215.02524 * 8 7 6 11 11 C 1.50701 * 109.47050 * 95.02540 * 8 7 6 12 12 H 1.07993 * 120.00322 * 35.01138 * 11 8 7 13 13 C 1.37876 * 119.99682 * 215.00941 * 11 8 7 14 14 N 1.31516 * 119.99843 * 184.91536 * 13 11 8 15 15 Si 1.86798 * 120.00185 * 4.91902 * 13 11 8 16 16 H 1.48498 * 109.47353 * 84.83491 * 15 13 11 17 17 H 1.48504 * 109.47241 * 204.83618 * 15 13 11 18 18 H 1.48500 * 109.47263 * 324.83199 * 15 13 11 19 19 N 1.36042 * 110.09663 * 0.02562 * 7 6 5 20 20 H 0.96998 * 126.35045 * 180.02562 * 19 7 6 21 21 C 1.38061 * 107.30006 * 359.78496 * 19 7 6 22 22 C 1.37847 * 119.77300 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47393 * 269.97887 * 1 2 3 24 24 H 1.09004 * 109.47347 * 29.98292 * 1 2 3 25 25 H 1.09002 * 109.46966 * 149.97454 * 1 2 3 26 26 H 1.08000 * 119.66981 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.05450 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47070 * 54.98068 * 10 8 7 29 29 H 1.08996 * 109.47140 * 174.98304 * 10 8 7 30 30 H 1.09004 * 109.46942 * 294.98455 * 10 8 7 31 31 H 0.97008 * 119.99401 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.15966 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5620 1.2259 0.0005 5 6 4.2771 0.0253 0.0005 6 7 5.6011 -0.2759 0.0005 7 6 5.7558 -1.5678 0.0000 8 6 7.0848 -2.2782 0.0004 9 1 7.8446 -1.6277 -0.4328 10 6 6.9781 -3.5600 -0.8282 11 6 7.4683 -2.6255 1.4158 12 1 6.7062 -2.9007 2.1297 13 6 8.7923 -2.5919 1.7992 14 7 9.1379 -2.9874 3.0049 15 14 10.0950 -1.9845 0.6062 16 1 10.1806 -0.5037 0.6784 17 1 11.4095 -2.5744 0.9660 18 1 9.7308 -2.3925 -0.7745 19 7 4.5428 -2.1838 -0.0010 20 1 4.3840 -3.1407 -0.0012 21 6 3.5799 -1.1945 0.0039 22 6 2.1915 -1.1965 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6470 2.1346 -0.0004 27 1 4.0882 2.1690 0.0009 28 1 6.6147 -3.3179 -1.8269 29 1 7.9600 -4.0275 -0.9023 30 1 6.2836 -4.2478 -0.3457 31 1 10.0695 -2.9641 3.2744 32 1 1.6504 -2.1312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260802047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:31 Heat of formation + Delta-G solvation = 29.718970 kcal Electronic energy + Delta-G solvation = -15291.816487 eV Core-core repulsion = 12830.274427 eV Total energy + Delta-G solvation = -2461.542060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.00269 -38.77777 -36.09932 -34.18518 -33.58541 -32.01167 -30.50187 -27.41893 -27.05607 -24.30943 -23.17260 -22.14350 -21.09803 -19.23271 -18.56723 -17.76592 -16.67958 -16.13084 -15.84090 -15.24054 -14.95454 -14.79339 -14.56230 -14.25290 -14.04941 -13.14833 -13.03488 -12.87227 -12.73342 -12.62812 -12.27815 -12.16317 -11.97791 -11.81005 -11.63102 -11.22229 -10.84004 -10.79394 -9.24564 -8.84533 -8.36396 -6.43647 0.08261 0.63184 1.34810 1.40272 1.47267 1.91798 2.11076 2.31312 2.93677 3.02740 3.34839 3.76987 4.06209 4.24726 4.33355 4.42543 4.53589 4.54688 4.68788 4.79984 4.85257 4.91256 4.96228 5.10686 5.15483 5.29421 5.42446 5.48621 5.53364 5.68354 5.71186 6.06427 6.13962 6.50757 6.63195 7.10094 7.21772 8.79601 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.006392 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.791363 B = 4379.497612 C = 4514.946145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.087 4.087 5 C 0.004 3.996 6 N -0.552 5.552 7 C 0.321 3.679 8 C 0.076 3.924 9 H 0.060 0.940 10 C -0.136 4.136 11 C -0.513 4.513 12 H 0.032 0.968 13 C 0.025 3.975 14 N -0.939 5.939 15 Si 0.938 3.062 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.234 1.234 19 N -0.590 5.590 20 H 0.430 0.570 21 C 0.025 3.975 22 C -0.118 4.118 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.129 0.871 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.270 0.730 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 3.450 -9.412 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.114 4.114 6 N -0.273 5.273 7 C 0.054 3.946 8 C 0.055 3.945 9 H 0.078 0.922 10 C -0.194 4.194 11 C -0.552 4.552 12 H 0.050 0.950 13 C -0.175 4.175 14 N -0.578 5.578 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.157 1.157 19 N -0.202 5.202 20 H 0.270 0.730 21 C -0.085 4.085 22 C -0.139 4.139 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.177 0.823 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.411 4.077 -9.296 17.628 hybrid contribution 0.554 -0.860 0.316 1.071 sum -13.857 3.217 -8.980 16.823 Atomic orbital electron populations 1.20787 0.87776 1.04099 1.03277 1.20034 0.97808 0.91371 0.98775 1.20858 0.92292 0.99215 1.01735 1.20242 0.94477 0.94981 1.00987 1.19748 0.89485 0.95071 1.07083 1.70387 1.17895 1.13273 1.25759 1.24250 0.88934 0.87982 0.93417 1.17981 0.86296 0.93772 0.96403 0.92221 1.21941 1.02583 0.96927 0.97947 1.20788 0.93164 1.46582 0.94666 0.94995 1.25826 1.00690 0.94102 0.96833 1.70015 1.18830 1.48008 1.20926 0.85873 0.78055 0.78997 0.80961 1.20097 1.20514 1.15721 1.43037 1.04976 1.09583 1.62574 0.72962 1.19298 0.92661 0.89060 1.07511 1.20120 0.88084 1.00099 1.05568 0.90227 0.89692 0.90570 0.82268 0.85290 0.92435 0.91948 0.92365 0.92076 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.00 71.24 0.71 -0.74 16 2 C -0.08 -1.83 5.88 -19.83 -0.12 -1.94 16 3 C -0.12 -3.01 9.61 22.02 0.21 -2.80 16 4 C -0.09 -2.89 10.05 22.25 0.22 -2.67 16 5 C 0.00 0.17 7.23 39.45 0.29 0.45 16 6 N -0.55 -26.70 11.27 -179.97 -2.03 -28.73 16 7 C 0.32 14.67 6.80 137.92 0.94 15.60 16 8 C 0.08 3.57 2.43 -12.29 -0.03 3.54 16 9 H 0.06 2.85 5.29 -2.39 -0.01 2.84 16 10 C -0.14 -5.08 8.82 71.98 0.63 -4.45 16 11 C -0.51 -28.93 8.84 25.60 0.23 -28.70 16 12 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 13 C 0.02 1.40 5.47 84.65 0.46 1.87 16 14 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 15 Si 0.94 43.55 26.99 68.60 1.85 45.41 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.23 -9.71 6.82 99.48 0.68 -9.03 16 19 N -0.59 -22.44 5.97 -179.22 -1.07 -23.51 16 20 H 0.43 13.56 8.25 -92.71 -0.76 12.80 16 21 C 0.02 0.91 7.31 38.86 0.28 1.19 16 22 C -0.12 -3.28 9.71 22.32 0.22 -3.06 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.91 8.08 -2.38 -0.02 0.89 16 25 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.02 7.61 -2.39 -0.02 2.00 16 31 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -71.67 273.64 3.44 -68.23 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.34 Total: 17.78 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.05 Total: -21.71 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.80 Total: -109.71 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.85 Total: 45.41 kcal Total: -71.67 3.44 -68.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.954 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds