Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38781 * 119.77096 * 2 1 4 4 C 1.36598 * 120.66656 * 180.27701 * 3 2 1 5 5 C 1.39738 * 119.88785 * 359.71293 * 4 3 2 6 6 N 1.35792 * 133.60298 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64358 * 179.97438 * 6 5 4 8 8 C 1.50697 * 124.94694 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47392 * 25.02913 * 8 7 6 10 10 C 1.53007 * 109.46733 * 145.02459 * 8 7 6 11 11 C 1.50697 * 109.47467 * 265.02521 * 8 7 6 12 12 H 1.07999 * 119.99667 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00085 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00186 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99891 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47056 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46845 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47270 * 239.99977 * 15 13 11 19 19 N 1.36035 * 110.10211 * 359.97438 * 7 6 5 20 20 H 0.96992 * 126.35359 * 180.02562 * 19 7 6 21 21 C 1.38053 * 107.30141 * 0.02562 * 19 7 6 22 22 C 1.37848 * 119.77611 * 179.70835 * 2 1 3 23 23 H 1.09000 * 109.47305 * 270.28705 * 1 2 3 24 24 H 1.08997 * 109.47588 * 30.29143 * 1 2 3 25 25 H 1.09006 * 109.46976 * 150.29041 * 1 2 3 26 26 H 1.07996 * 119.66881 * 359.97438 * 3 2 1 27 27 H 1.08008 * 120.06113 * 179.68193 * 4 3 2 28 28 H 1.08998 * 109.46474 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.46939 * 299.99964 * 10 8 7 30 30 H 1.08998 * 109.47075 * 60.00550 * 10 8 7 31 31 H 0.96992 * 120.00022 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.15787 * 0.02750 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5619 1.2260 -0.0057 5 6 4.2771 0.0255 -0.0055 6 7 5.6011 -0.2758 -0.0097 7 6 5.7557 -1.5676 -0.0067 8 6 7.0848 -2.2780 -0.0103 9 1 7.8460 -1.6268 0.4193 10 6 6.9809 -3.5585 0.8207 11 6 7.4638 -2.6275 -1.4264 12 1 6.8076 -2.3622 -2.2421 13 6 8.6477 -3.2869 -1.6804 14 7 9.4465 -3.6104 -0.6870 15 14 9.1171 -3.7208 -3.4357 16 1 8.0566 -3.2498 -4.3625 17 1 10.4032 -3.0636 -3.7809 18 1 9.2647 -5.1932 -3.5590 19 7 4.5429 -2.1837 0.0003 20 1 4.3840 -3.1405 0.0041 21 6 3.5799 -1.1944 0.0010 22 6 2.1916 -1.1965 0.0061 23 1 -0.3634 0.0051 1.0276 24 1 -0.3634 0.8873 -0.5183 25 1 -0.3633 -0.8926 -0.5093 26 1 1.6470 2.1346 -0.0004 27 1 4.0882 2.1691 -0.0108 28 1 7.9421 -4.0724 0.8177 29 1 6.7068 -3.3056 1.8450 30 1 6.2197 -4.2097 0.3911 31 1 10.2792 -4.0746 -0.8658 32 1 1.6505 -2.1312 0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260802051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = 48.492446 kcal Electronic energy + Delta-G solvation = -15259.652316 eV Core-core repulsion = 12798.924335 eV Total energy + Delta-G solvation = -2460.727981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49363 -37.46420 -34.32571 -32.69085 -31.34160 -30.49223 -29.01868 -25.94255 -25.28119 -22.79115 -21.75838 -20.77557 -19.51604 -17.15743 -16.60488 -16.22285 -15.00831 -14.58465 -14.50113 -13.75722 -13.58934 -13.37067 -12.99403 -12.79932 -12.13403 -11.77287 -11.57269 -11.13591 -11.08585 -11.03247 -10.75225 -10.54557 -10.36883 -10.10876 -9.98491 -9.25114 -9.19546 -8.54271 -7.89263 -7.42526 -6.17075 -4.25458 1.42474 1.92762 3.22519 3.30764 3.34701 3.50537 3.59823 4.27821 4.37151 4.82701 5.06601 5.13206 5.18607 5.38478 5.54888 5.64809 5.76512 5.83957 5.99160 6.10175 6.19344 6.43565 6.53505 6.70885 6.74342 6.86636 6.92735 7.05447 7.32462 7.47999 7.61544 7.84202 8.02459 8.14622 8.72392 8.75356 9.40258 10.88638 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043464 B = 0.006035 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.053696 B = 4638.672067 C = 4717.503481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.071 4.071 5 C 0.052 3.948 6 N -0.518 5.518 7 C 0.349 3.651 8 C 0.107 3.893 9 H 0.067 0.933 10 C -0.141 4.141 11 C -0.512 4.512 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.901 3.099 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.283 1.283 19 N -0.599 5.599 20 H 0.419 0.581 21 C 0.033 3.967 22 C -0.109 4.109 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.016 0.984 30 H 0.027 0.973 31 H 0.264 0.736 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 2.981 2.108 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.067 4.067 6 N -0.238 5.238 7 C 0.083 3.917 8 C 0.087 3.913 9 H 0.085 0.915 10 C -0.199 4.199 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.209 1.209 19 N -0.209 5.209 20 H 0.258 0.742 21 C -0.078 4.078 22 C -0.130 4.130 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.515 3.566 2.142 13.188 hybrid contribution -0.387 -1.358 -0.974 1.715 sum -12.902 2.208 1.169 13.142 Atomic orbital electron populations 1.20670 0.91331 1.02274 1.01789 1.19415 0.95385 0.92302 1.02490 1.20360 0.93430 0.97154 1.04401 1.19922 0.93059 0.95703 1.00403 1.19303 0.90289 0.92846 1.04272 1.70602 1.15275 1.12539 1.25378 1.24962 0.88764 0.87706 0.90280 1.17719 0.83493 0.92320 0.97818 0.91519 1.21870 1.03755 0.98903 0.95403 1.20906 1.05518 1.37961 0.90728 0.92348 1.24900 0.95804 0.95248 0.97600 1.69861 1.11725 1.40107 1.30706 0.86390 0.78638 0.77985 0.84183 1.19754 1.20670 1.20862 1.43267 1.05806 1.08977 1.62862 0.74191 1.18922 0.91464 0.90092 1.07327 1.19686 0.89581 0.97937 1.05763 0.91681 0.91779 0.92047 0.86161 0.85896 0.88322 0.96521 0.95430 0.92581 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.00 36.00 0.36 -0.67 16 2 C -0.09 -1.30 5.88 -104.56 -0.62 -1.92 16 3 C -0.13 -1.89 9.61 -39.97 -0.38 -2.28 16 4 C -0.07 -1.22 10.05 -39.61 -0.40 -1.62 16 5 C 0.05 1.09 7.23 -84.70 -0.61 0.48 16 6 N -0.52 -12.33 11.27 -8.23 -0.09 -12.42 16 7 C 0.35 8.02 6.75 -154.83 -1.05 6.98 16 8 C 0.11 2.64 2.77 -92.92 -0.26 2.38 16 9 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 10 C -0.14 -3.13 8.70 37.16 0.32 -2.81 16 11 C -0.51 -13.70 8.55 -34.44 -0.29 -13.99 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 N -0.60 -11.74 5.97 -8.00 -0.05 -11.79 16 20 H 0.42 7.07 8.09 -40.82 -0.33 6.74 16 21 C 0.03 0.62 7.31 -83.98 -0.61 0.01 16 22 C -0.11 -1.68 9.71 -39.50 -0.38 -2.07 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.03 0.55 7.36 -51.93 -0.38 0.17 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -29.36 273.61 -8.37 -37.73 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.94 Total: 3.83 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -4.02 Total: -13.83 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.49 Total: -47.59 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.36 -8.37 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.219 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds