Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38781 * 119.77096 * 2 1 4 4 C 1.36598 * 120.66656 * 180.27701 * 3 2 1 5 5 C 1.39738 * 119.88785 * 359.71293 * 4 3 2 6 6 N 1.35792 * 133.60298 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64358 * 179.97438 * 6 5 4 8 8 C 1.50697 * 124.94694 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47392 * 25.02913 * 8 7 6 10 10 C 1.53007 * 109.46733 * 145.02459 * 8 7 6 11 11 C 1.50697 * 109.47467 * 265.02521 * 8 7 6 12 12 H 1.07999 * 119.99667 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00085 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00186 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99891 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47056 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46845 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47270 * 239.99977 * 15 13 11 19 19 N 1.36035 * 110.10211 * 359.97438 * 7 6 5 20 20 H 0.96992 * 126.35359 * 180.02562 * 19 7 6 21 21 C 1.38053 * 107.30141 * 0.02562 * 19 7 6 22 22 C 1.37848 * 119.77611 * 179.70835 * 2 1 3 23 23 H 1.09000 * 109.47305 * 270.28705 * 1 2 3 24 24 H 1.08997 * 109.47588 * 30.29143 * 1 2 3 25 25 H 1.09006 * 109.46976 * 150.29041 * 1 2 3 26 26 H 1.07996 * 119.66881 * 359.97438 * 3 2 1 27 27 H 1.08008 * 120.06113 * 179.68193 * 4 3 2 28 28 H 1.08998 * 109.46474 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.46939 * 299.99964 * 10 8 7 30 30 H 1.08998 * 109.47075 * 60.00550 * 10 8 7 31 31 H 0.96992 * 120.00022 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.15787 * 0.02750 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5619 1.2260 -0.0057 5 6 4.2771 0.0255 -0.0055 6 7 5.6011 -0.2758 -0.0097 7 6 5.7557 -1.5676 -0.0067 8 6 7.0848 -2.2780 -0.0103 9 1 7.8460 -1.6268 0.4193 10 6 6.9809 -3.5585 0.8207 11 6 7.4638 -2.6275 -1.4264 12 1 6.8076 -2.3622 -2.2421 13 6 8.6477 -3.2869 -1.6804 14 7 9.4465 -3.6104 -0.6870 15 14 9.1171 -3.7208 -3.4357 16 1 8.0566 -3.2498 -4.3625 17 1 10.4032 -3.0636 -3.7809 18 1 9.2647 -5.1932 -3.5590 19 7 4.5429 -2.1837 0.0003 20 1 4.3840 -3.1405 0.0041 21 6 3.5799 -1.1944 0.0010 22 6 2.1916 -1.1965 0.0061 23 1 -0.3634 0.0051 1.0276 24 1 -0.3634 0.8873 -0.5183 25 1 -0.3633 -0.8926 -0.5093 26 1 1.6470 2.1346 -0.0004 27 1 4.0882 2.1691 -0.0108 28 1 7.9421 -4.0724 0.8177 29 1 6.7068 -3.3056 1.8450 30 1 6.2197 -4.2097 0.3911 31 1 10.2792 -4.0746 -0.8658 32 1 1.6505 -2.1312 0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260802051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = 31.393995 kcal Electronic energy + Delta-G solvation = -15260.393761 eV Core-core repulsion = 12798.924335 eV Total energy + Delta-G solvation = -2461.469425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.98444 -38.75586 -36.20395 -34.14882 -33.06346 -31.89510 -30.38284 -27.42007 -27.02294 -24.34083 -23.21471 -22.11272 -21.21016 -18.75170 -18.33419 -17.75226 -16.76327 -16.10654 -15.91822 -15.08671 -14.91019 -14.70691 -14.64346 -14.15434 -13.56798 -13.03248 -12.95314 -12.87081 -12.70846 -12.38513 -12.31035 -12.21135 -12.11569 -11.92214 -11.60002 -11.09287 -10.82224 -10.57224 -9.23753 -8.84818 -8.19041 -6.35779 0.09327 0.64138 1.39150 1.41936 1.52751 1.94150 2.12374 2.40837 2.95397 3.07947 3.42356 3.81162 4.06950 4.30524 4.37494 4.48775 4.58383 4.70584 4.82221 4.87623 4.92560 4.97032 4.99942 5.15782 5.30230 5.40478 5.53883 5.66432 5.69569 5.72657 5.88668 6.07008 6.13393 6.57032 6.67442 7.13565 7.33042 8.85264 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043464 B = 0.006035 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.053696 B = 4638.672067 C = 4717.503481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.087 4.087 5 C 0.003 3.997 6 N -0.554 5.554 7 C 0.322 3.678 8 C 0.110 3.890 9 H 0.028 0.972 10 C -0.127 4.127 11 C -0.529 4.529 12 H 0.042 0.958 13 C 0.026 3.974 14 N -0.907 5.907 15 Si 0.962 3.038 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.270 1.270 19 N -0.589 5.589 20 H 0.429 0.571 21 C 0.023 3.977 22 C -0.118 4.118 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.268 0.732 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 3.070 1.654 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.115 4.115 6 N -0.275 5.275 7 C 0.055 3.945 8 C 0.090 3.910 9 H 0.046 0.954 10 C -0.185 4.185 11 C -0.568 4.568 12 H 0.061 0.939 13 C -0.174 4.174 14 N -0.545 5.545 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.195 1.195 19 N -0.201 5.201 20 H 0.270 0.730 21 C -0.087 4.087 22 C -0.138 4.138 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.178 0.822 27 H 0.147 0.853 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.590 3.646 1.699 16.101 hybrid contribution 0.387 -1.245 -0.800 1.529 sum -15.204 2.401 0.898 15.418 Atomic orbital electron populations 1.20783 0.87741 1.03976 1.03404 1.20034 0.97811 0.91340 0.98813 1.20856 0.92254 0.99217 1.01737 1.20236 0.94479 0.94919 1.01038 1.19788 0.89491 0.95097 1.07100 1.70435 1.17853 1.13301 1.25915 1.24366 0.89129 0.87894 0.93107 1.17451 0.83912 0.92657 0.96986 0.95400 1.21670 1.03017 0.97749 0.96065 1.21033 1.05866 1.38502 0.91383 0.93946 1.25610 0.95594 0.95010 1.01228 1.69963 1.11977 1.40277 1.32328 0.85452 0.77971 0.78249 0.79635 1.20131 1.20390 1.19501 1.43057 1.04988 1.09578 1.62432 0.73033 1.19319 0.92674 0.89062 1.07622 1.20120 0.88018 1.00120 1.05583 0.89890 0.89811 0.90765 0.82210 0.85282 0.90529 0.94957 0.93732 0.92243 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.00 71.24 0.71 -0.74 16 2 C -0.08 -1.84 5.88 -19.83 -0.12 -1.96 16 3 C -0.12 -3.02 9.61 22.02 0.21 -2.81 16 4 C -0.09 -2.92 10.05 22.25 0.22 -2.69 16 5 C 0.00 0.14 7.23 39.45 0.29 0.42 16 6 N -0.55 -27.64 11.27 -179.96 -2.03 -29.67 16 7 C 0.32 15.46 6.75 137.92 0.93 16.39 16 8 C 0.11 5.72 2.77 -12.29 -0.03 5.69 16 9 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 10 C -0.13 -5.79 8.70 71.98 0.63 -5.16 16 11 C -0.53 -29.36 8.55 25.60 0.22 -29.14 16 12 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 13 C 0.03 1.41 5.30 84.65 0.45 1.86 16 14 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 15 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 N -0.59 -23.40 5.97 -179.23 -1.07 -24.47 16 20 H 0.43 14.44 8.09 -92.71 -0.75 13.69 16 21 C 0.02 0.88 7.31 38.86 0.28 1.16 16 22 C -0.12 -3.32 9.71 22.32 0.22 -3.10 16 23 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 26 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.08 3.85 6.07 -2.39 -0.01 3.83 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.82 7.36 -2.39 -0.02 1.80 16 31 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -66.35 273.61 3.56 -62.80 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.38 Total: 16.34 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.01 Total: -20.09 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -2.86 Total: -104.17 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.35 3.56 -62.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.192 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds