Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47395 * 2 1 4 4 C 1.39027 * 126.13546 * 269.99706 * 3 2 1 5 5 C 1.40135 * 134.27635 * 359.73599 * 4 3 2 6 6 C 1.39778 * 119.87066 * 180.02562 * 5 4 3 7 7 C 1.41003 * 119.52061 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99890 * 149.82034 * 7 6 5 9 9 C 1.39771 * 119.99749 * 329.81543 * 7 6 5 10 10 N 1.30948 * 119.99799 * 161.60875 * 9 7 6 11 11 Si 1.86799 * 120.00175 * 341.60751 * 9 7 6 12 12 H 1.48504 * 109.47017 * 95.41703 * 11 9 7 13 13 H 1.48494 * 109.47084 * 215.41785 * 11 9 7 14 14 H 1.48497 * 109.47185 * 335.42094 * 11 9 7 15 15 C 1.45977 * 120.96160 * 359.95280 * 6 5 4 16 16 C 1.35054 * 120.92813 * 0.05346 * 15 6 5 17 17 C 1.46008 * 119.61800 * 359.96724 * 16 15 6 18 18 N 1.31784 * 134.01470 * 180.02562 * 17 16 15 19 19 N 1.34009 * 126.14013 * 89.68612 * 3 2 1 20 20 C 1.46492 * 124.99518 * 0.24199 * 19 3 2 21 21 H 1.08999 * 109.47371 * 300.00773 * 1 2 3 22 22 H 1.09003 * 109.46524 * 60.00496 * 1 2 3 23 23 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47371 * 239.99227 * 2 1 3 25 25 H 1.09004 * 109.46996 * 119.99726 * 2 1 3 26 26 H 1.08001 * 120.06633 * 0.02562 * 5 4 3 27 27 H 0.97003 * 119.99994 * 180.02562 * 10 9 7 28 28 H 1.08001 * 119.53200 * 180.02562 * 15 6 5 29 29 H 1.08009 * 120.19001 * 180.02562 * 16 15 6 30 30 H 1.08999 * 109.47536 * 90.00110 * 20 19 3 31 31 H 1.09008 * 109.47470 * 210.00073 * 20 19 3 32 32 H 1.08999 * 109.47211 * 329.99763 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3058 2.1937 -1.1228 5 6 2.2324 1.9721 -2.5046 6 6 2.5912 2.9899 -3.3929 7 6 2.5151 2.7587 -4.7818 8 1 2.3053 3.5770 -5.4547 9 6 2.7112 1.4706 -5.2875 10 7 2.2983 1.1708 -6.4935 11 14 3.5624 0.1766 -4.2432 12 1 2.5418 -0.6457 -3.5449 13 1 4.3901 -0.6961 -5.1139 14 1 4.4316 0.8431 -3.2405 15 6 3.0432 4.2889 -2.9037 16 6 3.1275 4.5409 -1.5796 17 6 2.7612 3.5011 -0.6223 18 7 2.7343 3.4363 0.6936 19 7 2.2903 2.1679 1.0822 20 6 2.1300 1.7222 2.4684 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8992 1.0168 -2.8824 27 1 2.4340 0.2768 -6.8444 28 1 3.3144 5.0590 -3.6107 29 1 3.4631 5.5065 -1.2308 30 1 3.0603 1.2724 2.8154 31 1 1.8825 2.5765 3.0986 32 1 1.3280 0.9861 2.5230 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260810638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = 77.688756 kcal Electronic energy + Delta-G solvation = -15688.786250 eV Core-core repulsion = 13229.324316 eV Total energy + Delta-G solvation = -2459.461934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20049 -36.21170 -33.84420 -33.17076 -31.58512 -30.15019 -28.33188 -26.72504 -24.38323 -22.93157 -21.71281 -20.50405 -18.49954 -17.55784 -16.09128 -15.57655 -15.22379 -14.92159 -14.08074 -13.53843 -13.41043 -13.03298 -12.82998 -12.47536 -12.45532 -12.35354 -11.94981 -11.41469 -11.26301 -10.85817 -10.75337 -10.54988 -10.33173 -9.98931 -9.87894 -9.31173 -8.99710 -8.74377 -7.65201 -6.89414 -6.67005 -4.28066 1.68538 2.88839 3.12006 3.19806 3.28039 3.35603 3.46600 4.09078 4.50582 4.90411 5.07990 5.25926 5.33282 5.34923 5.52225 5.55683 5.62366 5.74016 5.93244 5.99882 6.16314 6.33001 6.42548 6.47502 6.64643 6.83412 7.09578 7.20657 7.38111 7.65905 7.77089 7.85020 7.98311 8.38736 8.53282 8.72855 8.86890 10.12423 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.010371 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.990987 B = 2699.211521 C = 3383.917937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C 0.002 3.998 4 C -0.099 4.099 5 C -0.271 4.271 6 C 0.066 3.934 7 C -0.433 4.433 8 H 0.090 0.910 9 C 0.083 3.917 10 N -0.813 5.813 11 Si 0.917 3.083 12 H -0.272 1.272 13 H -0.298 1.298 14 H -0.245 1.245 15 C -0.082 4.082 16 C -0.106 4.106 17 C 0.057 3.943 18 N -0.316 5.316 19 N -0.349 5.349 20 C 0.104 3.896 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.284 0.716 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 -2.854 10.990 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.293 4.293 6 C 0.062 3.938 7 C -0.461 4.461 8 H 0.108 0.892 9 C -0.135 4.135 10 N -0.437 5.437 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.227 1.227 14 H -0.168 1.168 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.099 4.099 18 N -0.143 5.143 19 N -0.130 5.130 20 C -0.038 4.038 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.624 -2.388 11.981 12.233 hybrid contribution 0.179 -1.124 -0.324 1.183 sum -0.444 -3.512 11.657 12.183 Atomic orbital electron populations 1.21751 0.94907 1.01221 1.02410 1.19925 0.95834 0.90029 1.02538 1.20681 1.10044 0.95058 0.86877 1.19049 1.05677 0.92549 0.93499 1.19739 1.19605 1.00838 0.89086 1.18309 0.91653 0.90466 0.93339 1.19364 1.40048 0.95300 0.91421 0.89179 1.26137 0.93253 0.99124 0.95029 1.69756 1.34854 1.22151 1.16948 0.86140 0.80413 0.79451 0.79518 1.19867 1.22667 1.16794 1.22150 0.97157 0.97282 0.93811 1.20588 1.05203 0.95783 0.91076 1.21869 1.02183 0.95608 0.90230 1.77094 1.26219 0.97913 1.13025 1.47669 1.50578 1.09562 1.05193 1.21673 1.02007 1.00647 0.79482 0.93305 0.91685 0.92557 0.90038 0.91888 0.88363 0.90584 0.86470 0.86983 0.91548 0.89913 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.90 37.16 0.37 -1.70 16 2 C -0.04 -0.71 5.89 -27.88 -0.16 -0.87 16 3 C 0.00 0.04 6.27 -81.35 -0.51 -0.47 16 4 C -0.10 -2.35 6.23 -105.25 -0.66 -3.01 16 5 C -0.27 -6.80 7.18 -38.29 -0.27 -7.08 16 6 C 0.07 1.67 5.23 -105.18 -0.55 1.12 16 7 C -0.43 -11.53 9.53 -37.96 -0.36 -11.89 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.08 2.17 5.38 -17.36 -0.09 2.08 16 10 N -0.81 -21.70 13.93 55.54 0.77 -20.93 16 11 Si 0.92 21.52 24.51 -169.99 -4.17 17.36 16 12 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 13 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.24 -5.99 6.88 56.52 0.39 -5.60 16 15 C -0.08 -1.82 9.85 -37.62 -0.37 -2.19 16 16 C -0.11 -2.27 10.26 -37.60 -0.39 -2.65 16 17 C 0.06 1.34 7.66 -81.13 -0.62 0.72 16 18 N -0.32 -6.94 12.51 34.26 0.43 -6.51 16 19 N -0.35 -6.63 3.95 -63.14 -0.25 -6.88 16 20 C 0.10 1.33 10.97 59.84 0.66 1.98 16 21 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.06 0.82 7.61 -51.93 -0.40 0.43 16 26 H 0.10 2.49 4.70 -52.49 -0.25 2.25 16 27 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 28 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 LS Contribution 271.07 15.07 4.09 4.09 Total: -1.00 -30.39 271.07 -6.10 -36.49 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.01 Total: 0.35 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.96 Total: -23.96 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.95 Total: -34.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.17 Total: 17.36 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.39 -6.10 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.177 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds