Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47395 * 2 1 4 4 C 1.39027 * 126.13546 * 269.99706 * 3 2 1 5 5 C 1.40135 * 134.27635 * 359.73599 * 4 3 2 6 6 C 1.39778 * 119.87066 * 180.02562 * 5 4 3 7 7 C 1.41003 * 119.52061 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99890 * 149.82034 * 7 6 5 9 9 C 1.39771 * 119.99749 * 329.81543 * 7 6 5 10 10 N 1.30948 * 119.99799 * 161.60875 * 9 7 6 11 11 Si 1.86799 * 120.00175 * 341.60751 * 9 7 6 12 12 H 1.48504 * 109.47017 * 95.41703 * 11 9 7 13 13 H 1.48494 * 109.47084 * 215.41785 * 11 9 7 14 14 H 1.48497 * 109.47185 * 335.42094 * 11 9 7 15 15 C 1.45977 * 120.96160 * 359.95280 * 6 5 4 16 16 C 1.35054 * 120.92813 * 0.05346 * 15 6 5 17 17 C 1.46008 * 119.61800 * 359.96724 * 16 15 6 18 18 N 1.31784 * 134.01470 * 180.02562 * 17 16 15 19 19 N 1.34009 * 126.14013 * 89.68612 * 3 2 1 20 20 C 1.46492 * 124.99518 * 0.24199 * 19 3 2 21 21 H 1.08999 * 109.47371 * 300.00773 * 1 2 3 22 22 H 1.09003 * 109.46524 * 60.00496 * 1 2 3 23 23 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47371 * 239.99227 * 2 1 3 25 25 H 1.09004 * 109.46996 * 119.99726 * 2 1 3 26 26 H 1.08001 * 120.06633 * 0.02562 * 5 4 3 27 27 H 0.97003 * 119.99994 * 180.02562 * 10 9 7 28 28 H 1.08001 * 119.53200 * 180.02562 * 15 6 5 29 29 H 1.08009 * 120.19001 * 180.02562 * 16 15 6 30 30 H 1.08999 * 109.47536 * 90.00110 * 20 19 3 31 31 H 1.09008 * 109.47470 * 210.00073 * 20 19 3 32 32 H 1.08999 * 109.47211 * 329.99763 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3058 2.1937 -1.1228 5 6 2.2324 1.9721 -2.5046 6 6 2.5912 2.9899 -3.3929 7 6 2.5151 2.7587 -4.7818 8 1 2.3053 3.5770 -5.4547 9 6 2.7112 1.4706 -5.2875 10 7 2.2983 1.1708 -6.4935 11 14 3.5624 0.1766 -4.2432 12 1 2.5418 -0.6457 -3.5449 13 1 4.3901 -0.6961 -5.1139 14 1 4.4316 0.8431 -3.2405 15 6 3.0432 4.2889 -2.9037 16 6 3.1275 4.5409 -1.5796 17 6 2.7612 3.5011 -0.6223 18 7 2.7343 3.4363 0.6936 19 7 2.2903 2.1679 1.0822 20 6 2.1300 1.7222 2.4684 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8992 1.0168 -2.8824 27 1 2.4340 0.2768 -6.8444 28 1 3.3144 5.0590 -3.6107 29 1 3.4631 5.5065 -1.2308 30 1 3.0603 1.2724 2.8154 31 1 1.8825 2.5765 3.0986 32 1 1.3280 0.9861 2.5230 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260810638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = 58.740050 kcal Electronic energy + Delta-G solvation = -15689.607928 eV Core-core repulsion = 13229.324316 eV Total energy + Delta-G solvation = -2460.283611 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.84087 -37.96990 -35.46844 -34.79693 -33.09109 -31.85333 -30.02256 -28.18082 -26.05625 -24.33810 -23.36644 -22.27325 -20.08906 -19.42035 -17.75632 -17.15109 -16.96710 -16.37191 -15.57096 -15.24360 -15.11074 -14.50925 -14.29901 -14.15679 -13.90044 -13.52691 -13.36914 -13.14148 -12.67710 -12.61182 -12.30068 -12.13451 -11.93388 -11.74330 -11.68457 -11.15549 -10.75134 -10.53264 -9.32210 -8.83832 -8.46958 -6.25661 0.01615 1.04870 1.29246 1.42433 1.51429 1.67334 1.71896 2.19472 2.61848 3.44148 3.54250 3.67080 4.02026 4.22331 4.25314 4.35196 4.44075 4.56409 4.62252 4.64931 4.77988 4.78086 4.97586 5.02194 5.13063 5.27632 5.32924 5.44635 5.67242 5.85539 5.89346 6.08469 6.28899 6.44663 6.70291 6.90469 6.97637 8.24245 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.010371 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.990987 B = 2699.211521 C = 3383.917937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.035 3.965 4 C -0.158 4.158 5 C -0.258 4.258 6 C 0.042 3.958 7 C -0.467 4.467 8 H 0.065 0.935 9 C 0.050 3.950 10 N -0.853 5.853 11 Si 0.965 3.035 12 H -0.262 1.262 13 H -0.284 1.284 14 H -0.263 1.263 15 C -0.098 4.098 16 C -0.099 4.099 17 C 0.035 3.965 18 N -0.334 5.334 19 N -0.335 5.335 20 C 0.086 3.914 21 H 0.065 0.935 22 H 0.034 0.966 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.291 0.709 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -4.344 14.747 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.098 4.098 4 C -0.168 4.168 5 C -0.280 4.280 6 C 0.039 3.961 7 C -0.497 4.497 8 H 0.083 0.917 9 C -0.164 4.164 10 N -0.481 5.481 11 Si 0.790 3.210 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.188 1.188 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.119 4.119 18 N -0.162 5.162 19 N -0.115 5.115 20 C -0.054 4.054 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.796 -3.860 15.770 16.255 hybrid contribution 0.162 -0.699 -1.069 1.288 sum -0.635 -4.559 14.701 15.404 Atomic orbital electron populations 1.21716 0.93159 1.03175 1.01773 1.20190 0.97195 0.87304 1.04146 1.21400 1.05828 0.96288 0.86268 1.19376 1.09175 0.94315 0.93906 1.19849 1.17804 1.00169 0.90182 1.18498 0.92616 0.92211 0.92820 1.19335 1.43172 0.95186 0.91998 0.91706 1.26668 0.93549 1.00324 0.95854 1.69779 1.37027 1.23082 1.18185 0.85429 0.79535 0.77877 0.78119 1.18754 1.21129 1.18760 1.22257 0.98089 0.96829 0.94806 1.20923 1.03820 0.96769 0.90480 1.22206 1.02709 0.95965 0.91025 1.77065 1.27417 0.99623 1.12119 1.48293 1.47449 1.08382 1.07336 1.22295 1.04691 1.02329 0.76035 0.91639 0.94658 0.89398 0.91250 0.87499 0.89258 0.89876 0.84601 0.83861 0.89035 0.88434 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.90 71.98 0.71 -2.70 16 2 C -0.05 -1.38 5.89 29.85 0.18 -1.20 16 3 C 0.04 1.31 6.27 42.42 0.27 1.58 16 4 C -0.16 -7.40 6.23 -20.27 -0.13 -7.53 16 5 C -0.26 -13.15 7.18 23.10 0.17 -12.98 16 6 C 0.04 2.19 5.23 -20.22 -0.11 2.08 16 7 C -0.47 -26.34 9.53 23.32 0.22 -26.12 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 9 C 0.05 2.72 5.38 85.20 0.46 3.17 16 10 N -0.85 -47.58 13.93 21.80 0.30 -47.27 16 11 Si 0.96 45.23 24.51 68.60 1.68 46.91 16 12 H -0.26 -11.63 6.71 99.48 0.67 -10.96 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.26 -12.98 6.88 99.48 0.68 -12.29 16 15 C -0.10 -4.44 9.85 23.54 0.23 -4.21 16 16 C -0.10 -4.21 10.26 23.55 0.24 -3.97 16 17 C 0.03 1.59 7.66 43.52 0.33 1.93 16 18 N -0.33 -13.86 12.51 -45.53 -0.57 -14.43 16 19 N -0.33 -11.43 3.95 -353.67 -1.40 -12.82 16 20 C 0.09 1.70 10.97 127.77 1.40 3.10 16 21 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 22 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.11 2.10 7.61 -2.38 -0.02 2.08 16 26 H 0.09 4.60 4.70 -2.91 -0.01 4.59 16 27 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 28 H 0.14 5.45 8.06 -2.91 -0.02 5.43 16 29 H 0.14 5.03 8.06 -2.91 -0.02 5.00 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.11 1.55 7.51 -2.39 -0.02 1.54 16 Total: -1.00 -68.87 271.07 5.05 -63.82 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.05 Total: 10.64 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 3.98 Total: -46.85 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.66 Total: -74.53 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.68 Total: 46.91 kcal Total: -68.87 5.05 -63.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.565 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds