Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37899 * 120.15552 * 2 1 4 4 C 1.38733 * 120.45206 * 180.02562 * 3 2 1 5 5 C 1.36640 * 120.66980 * 0.03938 * 4 3 2 6 6 C 1.39703 * 119.88387 * 359.96690 * 5 4 3 7 7 N 1.35793 * 133.60198 * 180.35459 * 6 5 4 8 8 C 1.30106 * 109.64209 * 180.11292 * 7 6 5 9 9 C 1.50701 * 124.94617 * 179.82830 * 8 7 6 10 10 H 1.09002 * 109.47060 * 24.69692 * 9 8 7 11 11 C 1.53002 * 109.47419 * 144.69773 * 9 8 7 12 12 C 1.50703 * 109.47064 * 264.69729 * 9 8 7 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 N 1.36038 * 110.10828 * 359.56355 * 8 7 6 21 21 H 0.97007 * 126.35029 * 180.24816 * 20 8 7 22 22 C 1.38056 * 107.30303 * 0.26578 * 20 8 7 23 23 H 1.08998 * 109.47103 * 269.97909 * 1 2 3 24 24 H 1.08995 * 109.47289 * 29.97769 * 1 2 3 25 25 H 1.09008 * 109.47087 * 149.97923 * 1 2 3 26 26 H 1.08001 * 119.77004 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.66716 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.05977 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47075 * 59.99368 * 11 9 8 30 30 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 31 31 H 1.09000 * 109.46986 * 300.00096 * 11 9 8 32 32 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1924 0.0000 4 6 3.5870 1.1995 -0.0005 5 6 4.2901 0.0279 -0.0019 6 6 3.6096 -1.1922 -0.0020 7 7 4.0122 -2.4891 0.0029 8 6 2.9717 -3.2701 -0.0023 9 6 3.0228 -4.7762 -0.0030 10 1 3.9663 -5.1079 0.4306 11 6 1.8597 -5.3264 0.8250 12 6 2.9151 -5.2819 -1.4185 13 1 2.8188 -4.5826 -2.2359 14 6 2.9385 -6.6373 -1.6701 15 7 2.8450 -7.0786 -2.9054 16 14 3.1043 -7.8469 -0.2562 17 1 1.7544 -8.2144 0.2418 18 1 3.8068 -9.0670 -0.7285 19 1 3.8836 -7.2209 0.8420 20 7 1.8307 -2.5292 -0.0013 21 1 0.9230 -2.8712 -0.0010 22 6 2.2043 -1.2001 -0.0010 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3634 -0.8899 -0.5142 26 1 1.6585 2.1270 0.0004 27 1 4.1167 2.1407 -0.0001 28 1 5.3699 0.0450 -0.0027 29 1 0.9162 -4.9947 0.3915 30 1 1.8970 -6.4158 0.8249 31 1 1.9376 -4.9607 1.8488 32 1 2.8611 -8.0322 -3.0823 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 58.085261 kcal Electronic energy + Delta-G solvation = -15471.767780 eV Core-core repulsion = 13011.455775 eV Total energy + Delta-G solvation = -2460.312005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.63474 -37.35711 -34.37952 -33.41129 -31.55800 -30.81263 -28.41843 -26.59014 -25.32390 -23.16795 -21.89665 -20.42589 -19.61456 -17.39635 -16.90410 -16.23388 -15.33106 -14.86886 -14.46341 -14.07606 -13.39864 -13.26252 -13.12394 -12.99469 -12.41246 -12.36130 -11.69218 -11.45518 -11.33955 -11.13630 -11.05476 -10.64740 -10.31342 -10.04730 -9.66120 -9.38686 -9.33118 -8.72445 -7.86257 -7.56302 -6.22214 -4.25496 1.35320 1.89599 3.15735 3.28766 3.30952 3.38701 3.49803 4.25791 4.26217 4.72025 4.95603 5.09837 5.10355 5.36377 5.41788 5.59960 5.64902 5.75969 5.92168 5.96580 6.04611 6.10825 6.26000 6.26307 6.45151 6.67686 6.78887 6.80219 6.96519 7.04887 7.32143 7.44210 7.90836 8.31078 8.59323 8.79074 9.34762 10.90190 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042265 B = 0.006882 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.326501 B = 4067.477640 C = 4251.980374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.078 4.078 6 C 0.059 3.941 7 N -0.513 5.513 8 C 0.354 3.646 9 C 0.076 3.924 10 H 0.067 0.933 11 C -0.154 4.154 12 C -0.517 4.517 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.262 1.262 20 N -0.596 5.596 21 H 0.419 0.581 22 C 0.035 3.965 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 11.886 7.673 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.151 4.151 5 C -0.098 4.098 6 C -0.061 4.061 7 N -0.233 5.233 8 C 0.088 3.912 9 C 0.055 3.945 10 H 0.085 0.915 11 C -0.212 4.212 12 C -0.556 4.556 13 H 0.095 0.905 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.187 1.187 20 N -0.206 5.206 21 H 0.258 0.742 22 C -0.076 4.076 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.422 11.503 7.550 14.178 hybrid contribution -1.229 -0.676 0.475 1.481 sum -4.651 10.827 8.025 14.257 Atomic orbital electron populations 1.20708 0.91589 1.02569 1.01924 1.18736 0.95102 0.90031 1.04071 1.20586 0.94084 0.96039 1.03675 1.20471 0.93931 0.97314 1.03393 1.19933 0.99590 0.89249 1.00981 1.19254 0.90062 0.92820 1.03941 1.70565 1.28519 0.99211 1.24978 1.24203 0.79387 0.96374 0.91244 1.18091 0.96923 0.80827 0.98626 0.91477 1.22237 0.99791 1.01139 0.98032 1.20681 1.52396 0.92882 0.89612 0.90543 1.24921 0.93982 0.97994 0.95692 1.69867 1.49073 1.14793 1.18960 0.86859 0.78204 0.80673 0.82673 1.20357 1.21964 1.18727 1.43167 1.10332 1.04327 1.62755 0.74185 1.18731 0.95765 0.85099 1.07956 0.91490 0.91301 0.92261 0.86050 0.86038 0.85893 0.92905 0.92653 0.94342 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.02 36.00 0.36 -0.91 16 2 C -0.08 -1.14 5.89 -104.54 -0.62 -1.76 16 3 C -0.12 -1.65 9.69 -39.52 -0.38 -2.04 16 4 C -0.13 -1.79 9.96 -39.98 -0.40 -2.19 16 5 C -0.08 -1.30 10.05 -39.61 -0.40 -1.70 16 6 C 0.06 1.19 7.23 -84.70 -0.61 0.57 16 7 N -0.51 -11.83 11.27 -8.23 -0.09 -11.92 16 8 C 0.35 7.83 6.75 -154.83 -1.05 6.78 16 9 C 0.08 1.76 2.36 -92.92 -0.22 1.54 16 10 H 0.07 1.61 7.20 -51.93 -0.37 1.24 16 11 C -0.15 -3.05 8.40 37.16 0.31 -2.73 16 12 C -0.52 -14.14 9.13 -34.44 -0.31 -14.45 16 13 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 14 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 15 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 16 Si 0.89 20.71 24.37 -169.99 -4.14 16.57 16 17 H -0.28 -6.17 6.87 56.52 0.39 -5.78 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 20 N -0.60 -11.20 5.97 -8.00 -0.05 -11.25 16 21 H 0.42 6.73 8.09 -40.82 -0.33 6.39 16 22 C 0.04 0.64 6.98 -83.99 -0.59 0.06 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 26 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.05 0.95 7.36 -51.93 -0.38 0.57 16 30 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -31.18 266.84 -7.30 -38.47 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.81 Total: 4.48 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -4.00 Total: -14.78 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.63 Total: -48.76 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.57 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.18 -7.30 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.558 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds