Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37899 * 120.15552 * 2 1 4 4 C 1.38733 * 120.45206 * 180.02562 * 3 2 1 5 5 C 1.36640 * 120.66980 * 0.03938 * 4 3 2 6 6 C 1.39703 * 119.88387 * 359.96690 * 5 4 3 7 7 N 1.35793 * 133.60198 * 180.35459 * 6 5 4 8 8 C 1.30106 * 109.64209 * 180.11292 * 7 6 5 9 9 C 1.50701 * 124.94617 * 179.82830 * 8 7 6 10 10 H 1.09002 * 109.47060 * 24.69692 * 9 8 7 11 11 C 1.53002 * 109.47419 * 144.69773 * 9 8 7 12 12 C 1.50703 * 109.47064 * 264.69729 * 9 8 7 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 N 1.36038 * 110.10828 * 359.56355 * 8 7 6 21 21 H 0.97007 * 126.35029 * 180.24816 * 20 8 7 22 22 C 1.38056 * 107.30303 * 0.26578 * 20 8 7 23 23 H 1.08998 * 109.47103 * 269.97909 * 1 2 3 24 24 H 1.08995 * 109.47289 * 29.97769 * 1 2 3 25 25 H 1.09008 * 109.47087 * 149.97923 * 1 2 3 26 26 H 1.08001 * 119.77004 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.66716 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.05977 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47075 * 59.99368 * 11 9 8 30 30 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 31 31 H 1.09000 * 109.46986 * 300.00096 * 11 9 8 32 32 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1924 0.0000 4 6 3.5870 1.1995 -0.0005 5 6 4.2901 0.0279 -0.0019 6 6 3.6096 -1.1922 -0.0020 7 7 4.0122 -2.4891 0.0029 8 6 2.9717 -3.2701 -0.0023 9 6 3.0228 -4.7762 -0.0030 10 1 3.9663 -5.1079 0.4306 11 6 1.8597 -5.3264 0.8250 12 6 2.9151 -5.2819 -1.4185 13 1 2.8188 -4.5826 -2.2359 14 6 2.9385 -6.6373 -1.6701 15 7 2.8450 -7.0786 -2.9054 16 14 3.1043 -7.8469 -0.2562 17 1 1.7544 -8.2144 0.2418 18 1 3.8068 -9.0670 -0.7285 19 1 3.8836 -7.2209 0.8420 20 7 1.8307 -2.5292 -0.0013 21 1 0.9230 -2.8712 -0.0010 22 6 2.2043 -1.2001 -0.0010 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3634 -0.8899 -0.5142 26 1 1.6585 2.1270 0.0004 27 1 4.1167 2.1407 -0.0001 28 1 5.3699 0.0450 -0.0027 29 1 0.9162 -4.9947 0.3915 30 1 1.8970 -6.4158 0.8249 31 1 1.9376 -4.9607 1.8488 32 1 2.8611 -8.0322 -3.0823 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260838229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 37.301300 kcal Electronic energy + Delta-G solvation = -15472.669040 eV Core-core repulsion = 13011.455775 eV Total energy + Delta-G solvation = -2461.213265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.06082 -38.63825 -36.19235 -34.71086 -33.54149 -32.12687 -29.77681 -27.66719 -27.23870 -24.83206 -23.17085 -21.76630 -21.26666 -18.95733 -18.70377 -17.65735 -17.01303 -16.26569 -15.93551 -15.33871 -15.00645 -14.91153 -14.37047 -14.28300 -14.05632 -13.37413 -13.16325 -13.07133 -12.67569 -12.59208 -12.35068 -12.26061 -12.04850 -11.58209 -11.46438 -11.25073 -10.86246 -10.80742 -9.17867 -8.90260 -8.36391 -6.45534 0.07351 0.65024 1.30562 1.39729 1.49559 1.89988 2.08546 2.28818 2.95478 2.97427 3.32884 3.72341 4.08337 4.14500 4.32934 4.39727 4.42259 4.48024 4.62012 4.70129 4.77717 4.86328 4.94267 4.97183 5.04772 5.28269 5.33923 5.45237 5.59645 5.61532 5.69167 6.08235 6.12628 6.48817 6.60473 7.07140 7.19137 8.80192 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042265 B = 0.006882 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.326501 B = 4067.477640 C = 4251.980374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.100 4.100 6 C 0.011 3.989 7 N -0.550 5.550 8 C 0.326 3.674 9 C 0.080 3.920 10 H 0.055 0.945 11 C -0.147 4.147 12 C -0.521 4.521 13 H 0.023 0.977 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.953 3.047 17 H -0.251 1.251 18 H -0.296 1.296 19 H -0.246 1.246 20 N -0.586 5.586 21 H 0.429 0.571 22 C 0.021 3.979 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.166 0.834 27 H 0.163 0.837 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 13.958 9.739 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.107 4.107 7 N -0.271 5.271 8 C 0.058 3.942 9 C 0.059 3.941 10 H 0.073 0.927 11 C -0.205 4.205 12 C -0.560 4.560 13 H 0.042 0.958 14 C -0.177 4.177 15 N -0.581 5.581 16 Si 0.778 3.222 17 H -0.177 1.177 18 H -0.224 1.224 19 H -0.169 1.169 20 N -0.197 5.197 21 H 0.269 0.731 22 C -0.089 4.089 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.145 0.855 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.893 13.608 9.631 17.374 hybrid contribution -0.751 -1.042 -0.258 1.310 sum -5.644 12.566 9.373 16.662 Atomic orbital electron populations 1.20778 0.88949 1.03548 1.03278 1.19278 0.97170 0.89115 1.03171 1.21196 0.94132 0.97101 1.00581 1.20980 0.94505 0.97637 1.00381 1.20250 1.00281 0.89266 1.02164 1.19768 0.91752 0.92713 1.06457 1.70407 1.29911 1.01162 1.25624 1.23829 0.80573 0.95987 0.93785 1.17889 0.97859 0.82111 0.96245 0.92743 1.22119 0.98616 1.00622 0.99147 1.20797 1.52051 0.92340 0.90765 0.95845 1.25842 0.93340 0.99989 0.98547 1.70025 1.50929 1.15439 1.21667 0.85789 0.79579 0.77464 0.79345 1.17657 1.22364 1.16950 1.42984 1.09967 1.04514 1.62254 0.73052 1.19159 0.95507 0.85714 1.08506 0.89821 0.88712 0.92962 0.81608 0.81995 0.85464 0.91660 0.93013 0.91297 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 10.02 71.23 0.71 -1.40 16 2 C -0.08 -2.29 5.89 -19.81 -0.12 -2.41 16 3 C -0.11 -2.46 9.69 22.31 0.22 -2.24 16 4 C -0.12 -2.75 9.96 22.01 0.22 -2.53 16 5 C -0.10 -3.27 10.05 22.25 0.22 -3.04 16 6 C 0.01 0.46 7.23 39.44 0.29 0.75 16 7 N -0.55 -26.48 11.27 -179.97 -2.03 -28.51 16 8 C 0.33 14.88 6.75 137.92 0.93 15.81 16 9 C 0.08 3.77 2.36 -12.28 -0.03 3.74 16 10 H 0.05 2.67 7.20 -2.39 -0.02 2.65 16 11 C -0.15 -5.62 8.40 71.98 0.60 -5.02 16 12 C -0.52 -29.86 9.13 25.60 0.23 -29.63 16 13 H 0.02 1.54 7.98 -2.91 -0.02 1.51 16 14 C 0.02 1.22 5.45 84.65 0.46 1.68 16 15 N -0.94 -58.04 13.96 21.45 0.30 -57.75 16 16 Si 0.95 42.78 24.37 68.60 1.67 44.45 16 17 H -0.25 -10.24 6.87 99.48 0.68 -9.55 16 18 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.25 -10.29 6.53 99.48 0.65 -9.64 16 20 N -0.59 -22.28 5.97 -179.23 -1.07 -23.35 16 21 H 0.43 13.73 8.09 -92.70 -0.75 12.98 16 22 C 0.02 0.77 6.98 38.86 0.27 1.04 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 25 H 0.05 1.09 8.09 -2.38 -0.02 1.07 16 26 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.06 2.28 7.36 -2.39 -0.02 2.26 16 30 H 0.05 2.00 3.27 -2.39 -0.01 1.99 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.80 266.84 3.19 -69.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.31 Total: 18.80 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.01 Total: -23.25 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -2.80 Total: -109.60 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.67 Total: 44.45 kcal Total: -72.80 3.19 -69.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.905 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds