Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38960 * 119.68678 * 2 1 4 4 C 1.36590 * 120.81802 * 180.02562 * 3 2 1 5 5 C 1.39286 * 119.84965 * 359.95341 * 4 3 2 6 6 N 1.37046 * 133.84823 * 180.02562 * 5 4 3 7 7 H 0.97001 * 125.45933 * 0.02562 * 6 5 4 8 8 N 1.39867 * 109.07499 * 180.28783 * 6 5 4 9 9 C 1.30247 * 110.09089 * 359.52751 * 8 6 5 10 10 C 1.50697 * 126.11333 * 180.17102 * 9 8 6 11 11 C 1.52998 * 109.46901 * 270.33446 * 10 9 8 12 12 C 1.50703 * 109.46905 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00136 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99868 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99551 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47114 * 90.00450 * 16 14 12 18 18 H 1.48503 * 109.47003 * 209.99731 * 16 14 12 19 19 H 1.48495 * 109.47461 * 329.99858 * 16 14 12 20 20 C 1.40817 * 119.41975 * 0.03976 * 5 4 3 21 21 C 1.36469 * 119.68488 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47258 * 269.97664 * 1 2 3 23 23 H 1.08995 * 109.47333 * 29.98250 * 1 2 3 24 24 H 1.09008 * 109.47063 * 149.98521 * 1 2 3 25 25 H 1.08003 * 119.59277 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.07772 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.46832 * 30.33110 * 10 9 8 28 28 H 1.08995 * 109.46889 * 150.33788 * 10 9 8 29 29 H 1.09003 * 109.47539 * 299.99663 * 11 10 9 30 30 H 1.08999 * 109.47505 * 60.00286 * 11 10 9 31 31 H 0.97000 * 120.00174 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.18059 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2072 0.0000 4 6 3.5608 1.2342 -0.0005 5 6 4.2778 0.0400 -0.0001 6 7 5.6138 -0.2652 0.0000 7 1 6.3384 0.3798 0.0002 8 7 5.7651 -1.6556 -0.0061 9 6 4.5975 -2.2327 0.0001 10 6 4.3406 -3.7176 0.0001 11 6 4.2537 -4.2201 -1.4424 12 6 3.9975 -5.7052 -1.4424 13 1 3.9054 -6.2373 -0.5071 14 6 3.8796 -6.3846 -2.6365 15 7 3.6555 -7.6804 -2.6364 16 14 4.0381 -5.4641 -4.2541 17 1 5.4598 -5.4589 -4.6834 18 1 3.2112 -6.1356 -5.2889 19 1 3.5695 -4.0663 -4.0764 20 6 3.5823 -1.1844 0.0000 21 6 2.1828 -1.1856 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5141 25 1 1.6435 2.1357 0.0004 26 1 4.0835 2.1793 -0.0001 27 1 5.1557 -4.2273 0.5139 28 1 3.4017 -3.9239 0.5139 29 1 3.4386 -3.7105 -1.9563 30 1 5.1926 -4.0139 -1.9563 31 1 3.5729 -8.1584 -3.4764 32 1 1.6406 -2.1196 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260909116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = 63.029124 kcal Electronic energy + Delta-G solvation = -15097.424522 eV Core-core repulsion = 12637.326899 eV Total energy + Delta-G solvation = -2460.097623 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04978 -37.46986 -34.39518 -32.55747 -31.54809 -30.46823 -29.45157 -26.37091 -25.47105 -22.87387 -21.43197 -21.02891 -19.11261 -17.66605 -16.69190 -16.33570 -15.12549 -14.73876 -14.18216 -14.08568 -13.82053 -13.39789 -13.08303 -12.88837 -12.56830 -12.12472 -11.79396 -11.62666 -11.23279 -11.05562 -10.93483 -10.59904 -10.30337 -9.96627 -9.72382 -9.50862 -9.20490 -8.52910 -8.46270 -7.66217 -6.03743 -4.02068 1.11709 1.61099 2.77952 2.94038 3.33412 3.40430 3.45972 3.88661 4.47112 4.68796 4.82704 4.93553 4.98985 5.22993 5.30920 5.43464 5.55503 5.66611 5.73547 5.97242 6.04741 6.05650 6.27023 6.37273 6.43880 6.59226 6.71407 6.85428 7.02450 7.26872 7.36032 7.51711 7.77483 7.94823 8.52304 9.00518 9.58684 11.09386 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.006967 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.677775 B = 4017.779832 C = 4473.518585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.070 4.070 4 C -0.148 4.148 5 C 0.123 3.877 6 N -0.521 5.521 7 H 0.435 0.565 8 N -0.261 5.261 9 C 0.126 3.874 10 C -0.032 4.032 11 C -0.004 4.004 12 C -0.520 4.520 13 H 0.075 0.925 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.169 4.169 21 C -0.029 4.029 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 18.408 5.413 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.170 4.170 5 C 0.006 3.994 6 N -0.234 5.234 7 H 0.278 0.722 8 N -0.074 5.074 9 C -0.052 4.052 10 C -0.071 4.071 11 C -0.043 4.043 12 C -0.558 4.558 13 H 0.094 0.906 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.177 4.177 21 C -0.050 4.050 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.124 18.079 5.296 18.958 hybrid contribution -0.187 0.995 -1.000 1.423 sum -2.312 19.073 4.296 19.687 Atomic orbital electron populations 1.20690 0.91036 1.02601 1.01931 1.19359 0.96176 0.92642 1.05831 1.20531 0.93055 0.97589 0.97872 1.19712 0.93848 0.94689 1.08767 1.18885 0.85450 0.95498 0.99530 1.45926 1.04336 1.04944 1.68163 0.72197 1.76637 1.22848 0.87138 1.20787 1.24242 0.88051 0.97537 0.95375 1.20219 1.02431 0.83106 1.01367 1.19532 0.96831 0.97166 0.90728 1.21075 1.49272 0.90803 0.94672 0.90646 1.24968 0.94488 0.94673 0.99040 1.69902 1.49744 1.07515 1.26909 0.86829 0.78407 0.80652 0.83773 1.20292 1.21315 1.18974 1.19907 0.94476 0.91688 1.11634 1.20361 0.91419 0.98291 0.94895 0.91677 0.92002 0.91480 0.85781 0.86110 0.90342 0.90071 0.96252 0.96680 0.92696 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.99 36.00 0.36 -0.67 16 2 C -0.14 -1.76 5.84 -104.99 -0.61 -2.37 16 3 C -0.07 -0.80 9.60 -39.91 -0.38 -1.19 16 4 C -0.15 -1.82 10.03 -39.79 -0.40 -2.22 16 5 C 0.12 1.89 7.34 -84.17 -0.62 1.27 16 6 N -0.52 -7.96 7.37 32.36 0.24 -7.72 16 7 H 0.43 4.98 8.96 -182.77 -1.64 3.34 16 8 N -0.26 -4.92 12.55 34.84 0.44 -4.48 16 9 C 0.13 2.43 6.69 -80.19 -0.54 1.89 16 10 C -0.03 -0.65 5.75 -27.89 -0.16 -0.81 16 11 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 12 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 16 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 20 C -0.17 -2.94 6.33 -105.20 -0.67 -3.61 16 21 C -0.03 -0.45 9.68 -39.58 -0.38 -0.83 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.07 0.66 8.07 -51.92 -0.42 0.24 16 25 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 30 H 0.01 0.38 7.57 -51.93 -0.39 -0.02 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 277.29 15.07 4.18 4.18 Total: -1.00 -32.42 277.29 -8.35 -40.77 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.37 Total: -1.33 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.94 Total: -21.88 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 1.45 Total: -39.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.42 -8.35 -40.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.803 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds