Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38960 * 119.68678 * 2 1 4 4 C 1.36590 * 120.81802 * 180.02562 * 3 2 1 5 5 C 1.39286 * 119.84965 * 359.95341 * 4 3 2 6 6 N 1.37046 * 133.84823 * 180.02562 * 5 4 3 7 7 H 0.97001 * 125.45933 * 0.02562 * 6 5 4 8 8 N 1.39867 * 109.07499 * 180.28783 * 6 5 4 9 9 C 1.30247 * 110.09089 * 359.52751 * 8 6 5 10 10 C 1.50697 * 126.11333 * 180.17102 * 9 8 6 11 11 C 1.52998 * 109.46901 * 270.33446 * 10 9 8 12 12 C 1.50703 * 109.46905 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00136 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99868 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99551 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47114 * 90.00450 * 16 14 12 18 18 H 1.48503 * 109.47003 * 209.99731 * 16 14 12 19 19 H 1.48495 * 109.47461 * 329.99858 * 16 14 12 20 20 C 1.40817 * 119.41975 * 0.03976 * 5 4 3 21 21 C 1.36469 * 119.68488 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47258 * 269.97664 * 1 2 3 23 23 H 1.08995 * 109.47333 * 29.98250 * 1 2 3 24 24 H 1.09008 * 109.47063 * 149.98521 * 1 2 3 25 25 H 1.08003 * 119.59277 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.07772 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.46832 * 30.33110 * 10 9 8 28 28 H 1.08995 * 109.46889 * 150.33788 * 10 9 8 29 29 H 1.09003 * 109.47539 * 299.99663 * 11 10 9 30 30 H 1.08999 * 109.47505 * 60.00286 * 11 10 9 31 31 H 0.97000 * 120.00174 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.18059 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2072 0.0000 4 6 3.5608 1.2342 -0.0005 5 6 4.2778 0.0400 -0.0001 6 7 5.6138 -0.2652 0.0000 7 1 6.3384 0.3798 0.0002 8 7 5.7651 -1.6556 -0.0061 9 6 4.5975 -2.2327 0.0001 10 6 4.3406 -3.7176 0.0001 11 6 4.2537 -4.2201 -1.4424 12 6 3.9975 -5.7052 -1.4424 13 1 3.9054 -6.2373 -0.5071 14 6 3.8796 -6.3846 -2.6365 15 7 3.6555 -7.6804 -2.6364 16 14 4.0381 -5.4641 -4.2541 17 1 5.4598 -5.4589 -4.6834 18 1 3.2112 -6.1356 -5.2889 19 1 3.5695 -4.0663 -4.0764 20 6 3.5823 -1.1844 0.0000 21 6 2.1828 -1.1856 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5141 25 1 1.6435 2.1357 0.0004 26 1 4.0835 2.1793 -0.0001 27 1 5.1557 -4.2273 0.5139 28 1 3.4017 -3.9239 0.5139 29 1 3.4386 -3.7105 -1.9563 30 1 5.1926 -4.0139 -1.9563 31 1 3.5729 -8.1584 -3.4764 32 1 1.6406 -2.1196 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260909116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = 42.793139 kcal Electronic energy + Delta-G solvation = -15098.302020 eV Core-core repulsion = 12637.326899 eV Total energy + Delta-G solvation = -2460.975121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.23742 -38.53692 -36.17108 -34.34849 -32.82668 -31.79651 -30.75638 -27.78532 -26.93352 -23.94063 -23.19506 -22.25307 -20.58452 -18.99400 -18.67353 -17.46822 -16.44505 -16.14559 -15.80445 -15.32161 -14.99884 -14.79956 -14.59830 -14.26098 -14.22473 -13.45388 -13.02317 -12.88614 -12.72052 -12.46454 -12.15953 -12.02837 -11.88099 -11.85464 -11.51850 -11.32489 -10.88356 -10.77503 -9.59475 -8.77074 -8.30201 -6.33749 0.00628 0.55527 1.33482 1.34346 1.46038 1.47398 1.80308 2.34382 2.82577 3.04883 3.52626 3.62586 3.80626 4.05893 4.31950 4.44556 4.54028 4.55317 4.62631 4.76880 4.89619 4.96744 4.99154 5.09725 5.30261 5.30811 5.38050 5.46743 5.50642 5.64174 5.73809 5.99993 6.26021 6.45298 6.66625 6.72830 7.30555 8.86119 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.006967 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.677775 B = 4017.779832 C = 4473.518585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.064 4.064 4 C -0.141 4.141 5 C 0.110 3.890 6 N -0.508 5.508 7 H 0.450 0.550 8 N -0.284 5.284 9 C 0.101 3.899 10 C -0.022 4.022 11 C 0.006 3.994 12 C -0.529 4.529 13 H 0.044 0.956 14 C 0.013 3.987 15 N -0.945 5.945 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.255 1.255 20 C -0.198 4.198 21 C -0.060 4.060 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.166 0.834 26 H 0.157 0.843 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.019 0.981 30 H 0.008 0.992 31 H 0.268 0.732 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 22.022 4.826 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.163 4.163 5 C -0.006 4.006 6 N -0.225 5.225 7 H 0.297 0.703 8 N -0.099 5.099 9 C -0.076 4.076 10 C -0.061 4.061 11 C -0.033 4.033 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.185 4.185 15 N -0.585 5.585 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.179 1.179 20 C -0.206 4.206 21 C -0.080 4.080 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.183 0.817 26 H 0.175 0.825 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.038 0.962 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.984 21.708 4.722 22.415 hybrid contribution 0.029 -0.057 -0.721 0.724 sum -2.955 21.651 4.001 22.215 Atomic orbital electron populations 1.20769 0.88903 1.03520 1.03077 1.19785 0.97794 0.92221 1.03359 1.21047 0.92985 0.98633 0.95735 1.20190 0.94289 0.94837 1.06939 1.19244 0.85122 0.96072 1.00161 1.45838 1.05234 1.03871 1.67535 0.70343 1.76478 1.23153 0.89241 1.21031 1.23914 0.89295 0.96946 0.97427 1.19914 1.02578 0.84768 0.98832 1.19355 0.96101 0.94485 0.93312 1.21376 1.48732 0.92923 0.93636 0.93748 1.25845 0.94201 0.95475 1.02949 1.70033 1.51144 1.09225 1.28148 0.85787 0.78745 0.79730 0.79189 1.19636 1.20247 1.17861 1.20083 0.95302 0.91843 1.13343 1.20493 0.90905 0.99412 0.97230 0.90320 0.89676 0.92021 0.81653 0.82533 0.91056 0.89455 0.96226 0.97396 0.92349 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.99 71.24 0.71 -1.01 16 2 C -0.13 -2.93 5.84 -20.11 -0.12 -3.05 16 3 C -0.06 -1.18 9.60 22.06 0.21 -0.96 16 4 C -0.14 -2.90 10.03 22.14 0.22 -2.68 16 5 C 0.11 3.18 7.34 39.21 0.29 3.47 16 6 N -0.51 -14.88 7.37 -51.53 -0.38 -15.26 16 7 H 0.45 9.49 8.96 -213.47 -1.91 7.57 16 8 N -0.28 -10.74 12.55 -43.69 -0.55 -11.29 16 9 C 0.10 3.97 6.69 44.79 0.30 4.27 16 10 C -0.02 -0.91 5.75 29.85 0.17 -0.74 16 11 C 0.01 0.30 4.02 29.85 0.12 0.42 16 12 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 13 H 0.04 2.79 7.99 -2.91 -0.02 2.77 16 14 C 0.01 0.76 5.47 84.66 0.46 1.22 16 15 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 16 Si 0.94 45.81 27.47 68.60 1.88 47.70 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 20 C -0.20 -6.80 6.33 -20.24 -0.13 -6.92 16 21 C -0.06 -1.79 9.68 22.27 0.22 -1.57 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.06 1.08 8.07 -2.38 -0.02 1.06 16 25 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 26 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 27 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 30 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -71.49 277.29 3.12 -68.38 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.85 Total: 8.02 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.70 Total: -38.28 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -0.63 Total: -85.82 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -71.49 3.12 -68.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.171 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds