Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36634 * 120.07172 * 2 1 4 4 C 1.38922 * 120.81690 * 180.02562 * 3 2 1 5 5 C 1.36506 * 120.62644 * 0.03616 * 4 3 2 6 6 C 1.39903 * 119.63582 * 0.02562 * 5 4 3 7 7 C 1.45934 * 134.03568 * 179.97438 * 6 5 4 8 8 C 1.50693 * 126.10517 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.47409 * 89.99689 * 8 7 6 10 10 C 1.50700 * 109.47032 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99573 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00314 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99857 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47094 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47275 * 120.00371 * 14 12 10 17 17 H 1.48502 * 109.47131 * 240.00282 * 14 12 10 18 18 N 1.30242 * 107.78293 * 179.71311 * 7 6 5 19 19 N 1.39867 * 110.09940 * 0.45574 * 18 7 6 20 20 H 0.97001 * 125.46505 * 179.80339 * 19 18 7 21 21 C 1.37046 * 109.07499 * 359.52753 * 19 18 7 22 22 H 1.09002 * 109.47620 * 269.90803 * 1 2 3 23 23 H 1.08997 * 109.47603 * 29.91578 * 1 2 3 24 24 H 1.09001 * 109.46834 * 149.91239 * 1 2 3 25 25 H 1.08001 * 119.59012 * 0.03720 * 3 2 1 26 26 H 1.07999 * 119.68792 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.18022 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47197 * 209.99594 * 8 7 6 29 29 H 1.09003 * 109.47278 * 330.00196 * 8 7 6 30 30 H 1.09000 * 109.46864 * 300.00109 * 9 8 7 31 31 H 1.09003 * 109.46487 * 60.00022 * 9 8 7 32 32 H 0.96998 * 120.00493 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1824 0.0000 4 6 3.5807 1.2005 -0.0005 5 6 4.2913 0.0350 -0.0018 6 6 3.6132 -1.1887 -0.0031 7 6 4.0392 -2.5845 -0.0051 8 6 5.4629 -3.0784 -0.0058 9 6 5.9448 -3.2476 1.4365 10 6 7.3684 -3.7422 1.4357 11 1 7.8785 -3.9178 0.5002 12 6 8.0198 -3.9694 2.6295 13 7 7.3987 -3.7550 3.7688 14 14 9.7845 -4.5817 2.6286 15 1 10.2522 -4.7419 1.2283 16 1 10.6497 -3.5993 3.3296 17 1 9.8548 -5.8902 3.3272 18 7 2.9692 -3.3270 0.0005 19 7 1.8255 -2.5218 -0.0041 20 1 0.9105 -2.8439 -0.0040 21 6 2.2048 -1.2049 -0.0025 22 1 -0.3634 -0.0016 1.0276 23 1 -0.3634 0.8907 -0.5125 24 1 -0.3633 -0.8892 -0.5152 25 1 1.6461 2.1145 0.0006 26 1 4.1034 2.1456 -0.0001 27 1 5.3711 0.0574 -0.0026 28 1 5.5145 -4.0376 -0.5209 29 1 6.0979 -2.3559 -0.5186 30 1 5.8932 -2.2884 1.9516 31 1 5.3098 -3.9701 1.9493 32 1 7.8569 -3.9152 4.6086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = 59.689005 kcal Electronic energy + Delta-G solvation = -15054.402027 eV Core-core repulsion = 12594.159566 eV Total energy + Delta-G solvation = -2460.242462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99130 -37.16866 -34.34087 -33.01281 -31.57789 -29.56016 -29.08024 -26.72230 -25.31991 -22.25966 -21.84117 -21.41288 -18.79731 -17.44930 -16.38572 -16.24644 -15.13080 -14.73117 -14.40855 -14.20761 -13.38829 -13.29746 -12.96092 -12.78324 -12.41446 -12.17617 -11.56225 -11.44135 -11.19251 -10.96784 -10.84714 -10.63149 -10.42581 -9.96362 -9.78139 -9.23954 -9.08255 -8.38490 -8.32848 -7.57077 -5.98415 -4.01691 1.19666 1.74716 2.88497 3.04035 3.33183 3.40643 3.44720 4.00120 4.47372 4.76544 4.83859 5.05212 5.06571 5.28214 5.37623 5.41193 5.49525 5.64791 5.70619 5.94680 6.11871 6.15873 6.43297 6.53113 6.62328 6.71997 6.77740 6.99580 7.14928 7.59212 7.68913 7.78449 8.00831 8.07498 8.39424 9.05207 9.62332 11.12895 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042377 B = 0.005627 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.574317 B = 4974.552224 C = 5266.593972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.075 4.075 4 C -0.168 4.168 5 C -0.031 4.031 6 C -0.169 4.169 7 C 0.131 3.869 8 C -0.041 4.041 9 C 0.031 3.969 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.262 5.262 19 N -0.520 5.520 20 H 0.433 0.567 21 C 0.130 3.870 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 9.177 -7.974 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.096 4.096 4 C -0.187 4.187 5 C -0.052 4.052 6 C -0.177 4.177 7 C -0.047 4.047 8 C -0.080 4.080 9 C -0.007 4.007 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.076 5.076 19 N -0.232 5.232 20 H 0.276 0.724 21 C 0.014 3.986 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.924 7.937 -7.794 16.307 hybrid contribution 0.629 0.291 0.258 0.740 sum -11.295 8.227 -7.536 15.876 Atomic orbital electron populations 1.20644 0.91336 1.02299 1.02016 1.18553 0.95387 0.90118 1.08481 1.20531 0.94316 0.96377 0.98378 1.20579 0.93833 0.97937 1.06390 1.20474 1.00225 0.90098 0.94369 1.19919 0.91960 0.94204 1.11623 1.24233 0.96384 0.89137 0.94900 1.20432 0.84410 1.00468 1.02719 1.19065 0.95907 0.97598 0.88136 1.21233 0.97690 1.44468 0.92507 0.92288 1.25015 0.98147 0.95591 0.95608 1.69986 1.37009 1.49012 0.97284 0.86521 0.84824 0.78443 0.78125 1.19630 1.21028 1.21049 1.76641 0.91698 1.18153 1.21079 1.45905 1.07729 1.01468 1.68128 0.72368 1.18678 0.94155 0.86244 0.99557 0.91512 0.91341 0.92558 0.85896 0.85862 0.85128 0.90940 0.90671 0.96181 0.96192 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.12 -1.61 5.86 -104.83 -0.61 -2.23 16 3 C -0.08 -0.93 9.60 -39.91 -0.38 -1.31 16 4 C -0.17 -2.22 9.97 -39.95 -0.40 -2.62 16 5 C -0.03 -0.50 10.07 -39.58 -0.40 -0.90 16 6 C -0.17 -3.10 6.33 -105.21 -0.67 -3.77 16 7 C 0.13 2.67 6.69 -80.19 -0.54 2.13 16 8 C -0.04 -0.87 5.75 -27.88 -0.16 -1.03 16 9 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 10 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 N -0.26 -5.22 12.55 34.84 0.44 -4.78 16 19 N -0.52 -8.46 7.37 32.36 0.24 -8.22 16 20 H 0.43 5.45 8.92 -182.77 -1.63 3.82 16 21 C 0.13 2.14 7.01 -84.17 -0.59 1.55 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 24 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 25 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 280.85 15.07 4.23 4.23 Total: -1.00 -32.22 280.85 -8.70 -40.92 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.39 Total: -0.80 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.94 Total: -21.53 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.41 Total: -39.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.22 -8.70 -40.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.613 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds