Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36625 * 120.07649 * 2 1 4 4 C 1.38922 * 120.81632 * 179.97438 * 3 2 1 5 5 C 1.36507 * 120.62567 * 0.02562 * 4 3 2 6 6 C 1.39898 * 119.63906 * 359.97438 * 5 4 3 7 7 C 1.45932 * 134.03906 * 179.97438 * 6 5 4 8 8 C 1.50703 * 126.10666 * 359.97438 * 7 6 5 9 9 H 1.09007 * 109.46560 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47077 * 120.00125 * 8 7 6 11 11 C 1.50701 * 109.47151 * 240.00479 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 N 1.30245 * 107.78780 * 180.26065 * 7 6 5 20 20 N 1.39867 * 110.09196 * 359.61221 * 19 7 6 21 21 H 0.96997 * 125.45837 * 180.17052 * 20 19 7 22 22 C 1.37047 * 109.08208 * 0.39820 * 20 19 7 23 23 H 1.09001 * 109.47538 * 90.00028 * 1 2 3 24 24 H 1.09006 * 109.47132 * 210.00458 * 1 2 3 25 25 H 1.09000 * 109.46848 * 329.99745 * 1 2 3 26 26 H 1.07997 * 119.58905 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.68800 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.17766 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47156 * 59.99979 * 10 8 7 30 30 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.46870 * 300.00040 * 10 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1823 0.0000 4 6 3.5808 1.2002 0.0005 5 6 4.2913 0.0346 0.0005 6 6 3.6132 -1.1890 0.0006 7 6 4.0390 -2.5848 0.0001 8 6 5.4627 -3.0790 -0.0011 9 1 6.1429 -2.2271 -0.0011 10 6 5.7090 -3.9277 1.2478 11 6 5.7034 -3.9146 -1.2319 12 1 4.9050 -4.0725 -1.9420 13 6 6.9408 -4.4827 -1.4482 14 7 7.9128 -4.2908 -0.5833 15 14 7.2369 -5.5250 -2.9698 16 1 7.0013 -4.7048 -4.1852 17 1 8.6384 -6.0159 -2.9686 18 1 6.3066 -6.6825 -2.9657 19 7 2.9689 -3.3273 -0.0053 20 7 1.8253 -2.5220 0.0003 21 1 0.9103 -2.8439 0.0003 22 6 2.2047 -1.2050 0.0007 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6463 2.1144 -0.0004 27 1 4.1035 2.1453 0.0009 28 1 5.3711 0.0570 0.0005 29 1 5.0288 -4.7794 1.2483 30 1 6.7389 -4.2847 1.2472 31 1 5.5349 -3.3231 2.1380 32 1 8.7833 -4.6908 -0.7353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260927657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = 66.110050 kcal Electronic energy + Delta-G solvation = -15443.444076 eV Core-core repulsion = 12983.480052 eV Total energy + Delta-G solvation = -2459.964024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72541 -36.97088 -34.52912 -32.85686 -31.04919 -29.21210 -28.61727 -26.56876 -25.12149 -22.66340 -21.64949 -21.42919 -18.40749 -17.24845 -16.44383 -15.69533 -14.96965 -14.63820 -14.41558 -13.89378 -13.15794 -13.13806 -12.92326 -12.52062 -12.30783 -11.61031 -11.37427 -11.22456 -10.94466 -10.86457 -10.76694 -10.52036 -10.22618 -10.00880 -9.58214 -9.36844 -8.84598 -8.37042 -8.13761 -7.34426 -6.00830 -4.06468 1.40981 1.93517 3.25148 3.33638 3.34814 3.38199 3.43625 4.20272 4.45853 4.93464 5.04180 5.24140 5.30407 5.39028 5.45433 5.59808 5.65616 5.81932 5.84841 6.18194 6.34897 6.39898 6.74899 6.86680 6.88985 6.97027 7.15756 7.22071 7.38901 7.62918 7.79093 7.93995 8.07453 8.30700 8.51434 8.93838 9.57246 11.05212 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.006985 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.087051 B = 4007.440022 C = 4173.948007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.174 4.174 5 C -0.030 4.030 6 C -0.173 4.173 7 C 0.154 3.846 8 C 0.112 3.888 9 H 0.049 0.951 10 C -0.131 4.131 11 C -0.503 4.503 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 N -0.259 5.259 20 N -0.527 5.527 21 H 0.429 0.571 22 C 0.128 3.872 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.009 0.991 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 9.162 1.985 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.194 4.194 5 C -0.051 4.051 6 C -0.181 4.181 7 C -0.024 4.024 8 C 0.091 3.909 9 H 0.067 0.933 10 C -0.190 4.190 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.071 5.071 20 N -0.239 5.239 21 H 0.272 0.728 22 C 0.011 3.989 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.028 0.972 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.487 7.874 2.013 13.268 hybrid contribution -0.126 0.070 -0.866 0.878 sum -10.613 7.944 1.146 13.306 Atomic orbital electron populations 1.20624 0.91573 1.02159 1.01775 1.18523 0.95200 0.90244 1.08881 1.20464 0.94278 0.96235 0.98976 1.20522 0.93821 0.97760 1.07274 1.20457 1.00067 0.90193 0.94375 1.20118 0.91943 0.94676 1.11371 1.24699 0.97154 0.87966 0.92553 1.17514 0.81484 0.96086 0.95766 0.93321 1.21768 1.04193 0.98459 0.94546 1.20966 0.96925 1.30828 1.05500 0.92457 1.24902 0.95889 0.96327 0.96670 1.69857 1.02877 1.44872 1.35350 0.86584 0.77075 0.80702 0.83239 1.20284 1.21203 1.20235 1.76744 0.91490 1.17405 1.21491 1.46091 1.08023 1.01457 1.68308 0.72815 1.18712 0.94286 0.86385 0.99558 0.91742 0.92621 0.91522 0.86197 0.86170 0.85386 0.94718 0.89131 0.97214 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.12 -1.83 5.86 -104.83 -0.61 -2.44 16 3 C -0.08 -1.07 9.60 -39.91 -0.38 -1.45 16 4 C -0.17 -2.53 9.97 -39.95 -0.40 -2.93 16 5 C -0.03 -0.54 10.07 -39.58 -0.40 -0.94 16 6 C -0.17 -3.55 6.33 -105.21 -0.67 -4.22 16 7 C 0.15 3.62 5.88 -80.19 -0.47 3.14 16 8 C 0.11 2.86 2.74 -92.92 -0.26 2.61 16 9 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 10 C -0.13 -3.25 8.95 37.16 0.33 -2.91 16 11 C -0.50 -14.04 8.55 -34.44 -0.29 -14.34 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -24.99 11.31 55.43 0.63 -24.36 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.26 -5.88 12.55 34.84 0.44 -5.44 16 20 N -0.53 -9.69 7.37 32.36 0.24 -9.45 16 21 H 0.43 6.24 8.92 -182.78 -1.63 4.61 16 22 C 0.13 2.33 7.01 -84.17 -0.59 1.74 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.57 8.05 -51.93 -0.42 0.15 16 25 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 276.24 15.07 4.16 4.16 Total: -1.00 -30.21 276.24 -8.31 -38.52 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.28 Total: 0.94 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -3.47 Total: -20.86 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 1.30 Total: -39.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.21 -8.31 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.629 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds