Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36625 * 120.07649 * 2 1 4 4 C 1.38922 * 120.81632 * 179.97438 * 3 2 1 5 5 C 1.36507 * 120.62567 * 0.02562 * 4 3 2 6 6 C 1.39898 * 119.63906 * 359.97438 * 5 4 3 7 7 C 1.45932 * 134.03906 * 179.97438 * 6 5 4 8 8 C 1.50703 * 126.10666 * 359.97438 * 7 6 5 9 9 H 1.09007 * 109.46560 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47077 * 120.00125 * 8 7 6 11 11 C 1.50701 * 109.47151 * 240.00479 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 N 1.30245 * 107.78780 * 180.26065 * 7 6 5 20 20 N 1.39867 * 110.09196 * 359.61221 * 19 7 6 21 21 H 0.96997 * 125.45837 * 180.17052 * 20 19 7 22 22 C 1.37047 * 109.08208 * 0.39820 * 20 19 7 23 23 H 1.09001 * 109.47538 * 90.00028 * 1 2 3 24 24 H 1.09006 * 109.47132 * 210.00458 * 1 2 3 25 25 H 1.09000 * 109.46848 * 329.99745 * 1 2 3 26 26 H 1.07997 * 119.58905 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.68800 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.17766 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47156 * 59.99979 * 10 8 7 30 30 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.46870 * 300.00040 * 10 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1823 0.0000 4 6 3.5808 1.2002 0.0005 5 6 4.2913 0.0346 0.0005 6 6 3.6132 -1.1890 0.0006 7 6 4.0390 -2.5848 0.0001 8 6 5.4627 -3.0790 -0.0011 9 1 6.1429 -2.2271 -0.0011 10 6 5.7090 -3.9277 1.2478 11 6 5.7034 -3.9146 -1.2319 12 1 4.9050 -4.0725 -1.9420 13 6 6.9408 -4.4827 -1.4482 14 7 7.9128 -4.2908 -0.5833 15 14 7.2369 -5.5250 -2.9698 16 1 7.0013 -4.7048 -4.1852 17 1 8.6384 -6.0159 -2.9686 18 1 6.3066 -6.6825 -2.9657 19 7 2.9689 -3.3273 -0.0053 20 7 1.8253 -2.5220 0.0003 21 1 0.9103 -2.8439 0.0003 22 6 2.2047 -1.2050 0.0007 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6463 2.1144 -0.0004 27 1 4.1035 2.1453 0.0009 28 1 5.3711 0.0570 0.0005 29 1 5.0288 -4.7794 1.2483 30 1 6.7389 -4.2847 1.2472 31 1 5.5349 -3.3231 2.1380 32 1 8.7833 -4.6908 -0.7353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260927657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = 48.161891 kcal Electronic energy + Delta-G solvation = -15444.222367 eV Core-core repulsion = 12983.480052 eV Total energy + Delta-G solvation = -2460.742315 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14801 -38.29293 -36.42062 -34.27306 -32.80526 -30.62532 -30.22505 -27.62534 -27.25200 -24.42587 -23.00856 -22.78123 -20.13197 -18.59021 -18.38705 -17.22019 -16.64713 -16.13912 -15.81247 -15.18937 -14.80285 -14.62057 -14.26328 -14.07989 -13.50639 -13.22225 -12.91186 -12.84208 -12.61346 -12.41559 -12.38609 -12.22230 -12.03662 -11.77740 -11.40779 -11.11648 -10.60653 -10.48902 -9.50372 -8.68918 -8.11862 -6.25420 0.10226 0.66567 1.41072 1.42860 1.50380 1.68520 1.95376 2.43644 2.91836 3.15271 3.73798 3.77685 3.96846 4.13033 4.36829 4.45562 4.65880 4.77616 4.82709 4.88757 4.93250 5.01642 5.13173 5.15707 5.30124 5.50274 5.59465 5.62346 5.68932 5.78594 5.98926 6.09738 6.25402 6.58213 6.76858 6.89426 7.41042 8.92795 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.006985 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.087051 B = 4007.440022 C = 4173.948007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.062 4.062 6 C -0.209 4.209 7 C 0.125 3.875 8 C 0.113 3.887 9 H 0.030 0.970 10 C -0.117 4.117 11 C -0.523 4.523 12 H 0.040 0.960 13 C 0.021 3.979 14 N -0.911 5.911 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.275 1.275 18 H -0.276 1.276 19 N -0.288 5.288 20 N -0.516 5.516 21 H 0.444 0.556 22 C 0.115 3.885 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.167 0.833 27 H 0.155 0.845 28 H 0.121 0.879 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 11.200 1.599 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.125 4.125 3 C -0.092 4.092 4 C -0.176 4.176 5 C -0.082 4.082 6 C -0.217 4.217 7 C -0.052 4.052 8 C 0.093 3.907 9 H 0.048 0.952 10 C -0.176 4.176 11 C -0.562 4.562 12 H 0.059 0.941 13 C -0.178 4.178 14 N -0.550 5.550 15 Si 0.781 3.219 16 H -0.199 1.199 17 H -0.200 1.200 18 H -0.202 1.202 19 N -0.102 5.102 20 N -0.231 5.231 21 H 0.290 0.710 22 C -0.001 4.001 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.184 0.816 27 H 0.173 0.827 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.338 9.921 1.632 15.916 hybrid contribution 0.357 -0.426 -0.721 0.910 sum -11.981 9.495 0.911 15.314 Atomic orbital electron populations 1.20720 0.88451 1.03794 1.03027 1.19078 0.97483 0.89010 1.06966 1.21042 0.93977 0.97620 0.96513 1.20972 0.94677 0.97773 1.04145 1.20609 1.00192 0.90661 0.96751 1.20315 0.93576 0.94189 1.13595 1.24322 0.96190 0.90021 0.94704 1.17275 0.83258 0.95052 0.95135 0.95179 1.21581 1.02538 0.98231 0.95252 1.21131 0.96883 1.31863 1.06332 0.94122 1.25614 0.95543 0.97257 0.99392 1.69955 1.03135 1.45313 1.36576 0.85654 0.77336 0.79021 0.79890 1.19873 1.19974 1.20193 1.76539 0.92650 1.19036 1.21944 1.45921 1.07686 1.01515 1.67973 0.71016 1.19086 0.93685 0.87118 1.00221 0.90529 0.92283 0.88725 0.81562 0.82740 0.86108 0.95628 0.90994 0.95626 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.01 71.24 0.71 -1.08 16 2 C -0.12 -3.17 5.86 -20.00 -0.12 -3.29 16 3 C -0.07 -1.61 9.60 22.06 0.21 -1.40 16 4 C -0.16 -4.07 9.97 22.03 0.22 -3.85 16 5 C -0.06 -2.18 10.07 22.27 0.22 -1.95 16 6 C -0.21 -8.74 6.33 -20.24 -0.13 -8.86 16 7 C 0.13 6.11 5.88 44.79 0.26 6.37 16 8 C 0.11 6.09 2.74 -12.29 -0.03 6.06 16 9 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 10 C -0.12 -6.08 8.95 71.98 0.64 -5.44 16 11 C -0.52 -30.42 8.55 25.60 0.22 -30.20 16 12 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 13 C 0.02 1.21 5.30 84.65 0.45 1.66 16 14 N -0.91 -52.34 11.31 21.45 0.24 -52.10 16 15 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 N -0.29 -13.49 12.55 -43.69 -0.55 -14.04 16 20 N -0.52 -18.91 7.37 -51.53 -0.38 -19.29 16 21 H 0.44 12.59 8.92 -213.47 -1.90 10.69 16 22 C 0.12 4.10 7.01 39.21 0.27 4.38 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.00 8.05 -2.38 -0.02 0.98 16 25 H 0.09 1.15 8.08 -2.39 -0.02 1.14 16 26 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 3.95 6.06 -2.38 -0.01 3.94 16 31 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -67.83 276.24 3.50 -64.33 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.78 Total: 11.91 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.94 Total: -37.60 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -0.69 Total: -85.43 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.83 3.50 -64.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.492 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds