Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38972 * 119.59544 * 2 1 4 4 C 1.36454 * 120.62846 * 180.02562 * 3 2 1 5 5 C 1.39947 * 119.64038 * 359.74246 * 4 3 2 6 6 C 1.40820 * 119.64758 * 0.55303 * 5 4 3 7 7 C 1.36596 * 119.59049 * 180.02562 * 2 1 3 8 8 N 1.37041 * 106.73165 * 179.68381 * 6 5 4 9 9 H 0.97000 * 125.46278 * 179.75095 * 8 6 5 10 10 N 1.39872 * 109.07792 * 359.72537 * 8 6 5 11 11 C 1.30242 * 110.08315 * 0.02562 * 10 8 6 12 12 C 1.50699 * 126.10782 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47566 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47303 * 300.02476 * 12 11 10 15 15 C 1.50700 * 109.47448 * 60.02249 * 12 11 10 16 16 H 1.08008 * 119.99895 * 354.35979 * 15 12 11 17 17 C 1.37870 * 120.00649 * 174.36274 * 15 12 11 18 18 N 1.31517 * 120.00401 * 156.87551 * 17 15 12 19 19 Si 1.86804 * 119.99857 * 336.87477 * 17 15 12 20 20 H 1.48501 * 109.47271 * 180.02562 * 19 17 15 21 21 H 1.48507 * 109.46839 * 299.99772 * 19 17 15 22 22 H 1.48496 * 109.47158 * 59.99696 * 19 17 15 23 23 H 1.08997 * 109.47123 * 269.97657 * 1 2 3 24 24 H 1.08999 * 109.46904 * 29.97374 * 1 2 3 25 25 H 1.09003 * 109.47260 * 149.97875 * 1 2 3 26 26 H 1.07999 * 119.68105 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.18203 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.07424 * 359.95997 * 7 2 1 29 29 H 1.08991 * 109.47549 * 173.17809 * 14 12 11 30 30 H 1.09001 * 109.46748 * 293.17835 * 14 12 11 31 31 H 1.08998 * 109.46934 * 53.17244 * 14 12 11 32 32 H 0.96997 * 119.99777 * 354.92075 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.2084 0.0000 4 6 3.5576 1.2330 -0.0005 5 6 4.2716 0.0294 0.0044 6 6 3.5743 -1.1941 -0.0020 7 6 2.1815 -1.1878 -0.0005 8 7 4.5193 -2.1867 -0.0023 9 1 4.3351 -3.1390 -0.0027 10 7 5.7919 -1.6063 -0.0026 11 6 5.6913 -0.3078 -0.0019 12 6 6.8366 0.6717 -0.0014 13 1 6.4448 1.6889 -0.0004 14 6 7.6934 0.4540 1.2474 15 6 7.6798 0.4593 -1.2323 16 1 7.4675 -0.3654 -1.8966 17 6 8.7222 1.3177 -1.5104 18 7 9.7162 0.9195 -2.2740 19 14 8.7228 3.0465 -0.8027 20 1 9.9447 3.7633 -1.2480 21 1 7.5202 3.7765 -1.2785 22 1 8.7034 2.9742 0.6804 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6415 2.1368 0.0004 27 1 4.0837 2.1763 -0.0001 28 1 1.6360 -2.1199 -0.0003 29 1 8.5860 1.0767 1.1888 30 1 7.1192 0.7245 2.1335 31 1 7.9851 -0.5944 1.3096 32 1 9.7537 0.0002 -2.5810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928297.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = 44.757183 kcal Electronic energy + Delta-G solvation = -15400.580270 eV Core-core repulsion = 12939.690316 eV Total energy + Delta-G solvation = -2460.889954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.16957 -38.54026 -36.50852 -33.99845 -32.93801 -31.71372 -30.04551 -27.55296 -26.81987 -24.12747 -23.66732 -22.17127 -20.29695 -19.41705 -18.66734 -17.48335 -16.12649 -15.95769 -15.85936 -15.17357 -15.01867 -14.77758 -14.38631 -14.20641 -13.92608 -13.24376 -13.03516 -12.86412 -12.59246 -12.38831 -12.22013 -11.98668 -11.76698 -11.71170 -11.38636 -11.22908 -10.83481 -10.38250 -9.39386 -8.93910 -8.68281 -6.34102 0.05801 0.61916 1.52216 1.59289 1.61955 1.78079 1.89781 2.54747 2.86037 3.02180 3.65395 3.73660 3.89823 4.04200 4.36795 4.44359 4.55551 4.61898 4.76028 4.81937 4.89740 4.93396 4.95310 5.11780 5.18352 5.31148 5.47658 5.51908 5.66277 5.70346 5.95780 6.04519 6.05817 6.52040 6.54866 6.82015 7.40182 8.60185 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.007489 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.415791 B = 3737.859425 C = 4164.878533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 C -0.161 4.161 4 C -0.048 4.048 5 C -0.215 4.215 6 C 0.117 3.883 7 C -0.156 4.156 8 N -0.520 5.520 9 H 0.445 0.555 10 N -0.296 5.296 11 C 0.130 3.870 12 C 0.087 3.913 13 H 0.056 0.944 14 C -0.133 4.133 15 C -0.598 4.598 16 H 0.006 0.994 17 C -0.011 4.011 18 N -0.928 5.928 19 Si 1.077 2.923 20 H -0.288 1.288 21 H -0.256 1.256 22 H -0.239 1.239 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 1.007 7.738 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.039 4.039 3 C -0.180 4.180 4 C -0.069 4.069 5 C -0.223 4.223 6 C 0.001 3.999 7 C -0.178 4.178 8 N -0.235 5.235 9 H 0.290 0.710 10 N -0.110 5.110 11 C -0.047 4.047 12 C 0.066 3.934 13 H 0.074 0.926 14 C -0.191 4.191 15 C -0.636 4.636 16 H 0.025 0.975 17 C -0.210 4.210 18 N -0.563 5.563 19 Si 0.896 3.104 20 H -0.214 1.214 21 H -0.181 1.181 22 H -0.163 1.163 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.174 0.826 27 H 0.152 0.848 28 H 0.166 0.834 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.837 1.357 7.727 19.486 hybrid contribution -0.612 -2.161 -0.663 2.342 sum -18.449 -0.804 7.064 19.772 Atomic orbital electron populations 1.20883 0.87766 1.04177 1.03712 1.19924 0.97978 0.91587 0.94442 1.20895 0.92745 0.99178 1.05176 1.20664 0.94854 0.95909 0.95434 1.20273 0.91919 0.95602 1.14544 1.19277 0.92675 0.88653 0.99321 1.19961 0.88079 1.00319 1.09469 1.45957 1.01089 1.08287 1.68120 0.70956 1.76547 1.01712 1.10591 1.22133 1.24034 0.94237 0.91686 0.94784 1.17659 0.88622 0.92267 0.94869 0.92626 1.22017 0.99711 1.00597 0.96770 1.21855 1.16978 1.14922 1.09857 0.97507 1.27314 0.90405 1.08054 0.95235 1.70980 1.29891 1.18952 1.36467 0.83694 0.77323 0.71087 0.78323 1.21408 1.18067 1.16318 0.89435 0.89820 0.90430 0.82592 0.84816 0.83382 0.92706 0.92538 0.94866 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.99 71.23 0.71 -0.69 16 2 C -0.04 -0.81 5.85 -20.07 -0.12 -0.93 16 3 C -0.16 -3.90 9.60 22.03 0.21 -3.69 16 4 C -0.05 -1.55 10.06 22.27 0.22 -1.33 16 5 C -0.22 -8.57 6.33 -20.24 -0.13 -8.70 16 6 C 0.12 4.10 7.34 39.21 0.29 4.38 16 7 C -0.16 -4.03 9.64 22.14 0.21 -3.82 16 8 N -0.52 -19.19 7.37 -51.53 -0.38 -19.57 16 9 H 0.44 12.77 8.96 -213.47 -1.91 10.86 16 10 N -0.30 -13.96 12.54 -43.70 -0.55 -14.51 16 11 C 0.13 6.14 5.87 44.79 0.26 6.41 16 12 C 0.09 4.28 2.34 -12.28 -0.03 4.25 16 13 H 0.06 2.54 6.71 -2.39 -0.02 2.52 16 14 C -0.13 -5.99 8.90 71.98 0.64 -5.35 16 15 C -0.60 -35.59 8.75 25.60 0.22 -35.36 16 16 H 0.01 0.45 7.99 -2.91 -0.02 0.42 16 17 C -0.01 -0.67 5.20 84.65 0.44 -0.23 16 18 N -0.93 -59.34 13.70 21.45 0.29 -59.04 16 19 Si 1.08 48.68 26.44 68.60 1.81 50.49 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.24 -9.45 6.15 99.48 0.61 -8.84 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 25 H 0.08 0.85 8.07 -2.39 -0.02 0.83 16 26 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.05 2.45 5.47 -2.39 -0.01 2.44 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 Total: -1.00 -74.42 272.89 3.20 -71.21 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.92 Total: 16.45 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.94 Total: -45.04 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -0.63 Total: -93.12 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 1.81 Total: 50.49 kcal Total: -74.42 3.20 -71.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928297.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.969 kcal (2) G-P(sol) polarization free energy of solvation -74.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds