Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37866 * 126.22422 * 313.01984 * 3 2 1 5 5 C 1.39956 * 107.09941 * 180.14491 * 4 3 2 6 6 C 1.35365 * 107.85805 * 359.61126 * 5 4 3 7 7 N 1.35768 * 108.84822 * 0.24089 * 6 5 4 8 8 C 1.46493 * 125.67805 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.67325 * 176.79547 * 8 7 6 10 10 C 1.54887 * 110.75931 * 53.35505 * 8 7 6 11 11 C 1.54270 * 104.19607 * 203.74569 * 10 8 7 12 12 C 1.53874 * 106.60186 * 23.60798 * 11 10 8 13 13 H 1.09003 * 110.07132 * 240.69605 * 12 11 10 14 14 C 1.50695 * 110.03109 * 119.28869 * 12 11 10 15 15 H 1.08008 * 119.99819 * 242.83293 * 14 12 11 16 16 C 1.37876 * 120.00201 * 62.83429 * 14 12 11 17 17 N 1.31511 * 119.99963 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99717 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47323 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46643 * 120.00242 * 18 16 14 21 21 H 1.48497 * 109.47411 * 239.99638 * 18 16 14 22 22 C 1.54265 * 106.59611 * 0.02562 * 12 11 10 23 23 H 1.07996 * 126.44925 * 0.02562 * 4 3 2 24 24 H 1.08002 * 126.07445 * 179.88047 * 5 4 3 25 25 H 1.07994 * 125.58024 * 180.21979 * 6 5 4 26 26 H 1.09001 * 110.48608 * 322.41957 * 10 8 7 27 27 H 1.08999 * 110.49052 * 85.06497 * 10 8 7 28 28 H 1.09005 * 110.02964 * 264.32047 * 11 10 8 29 29 H 1.09000 * 110.03227 * 142.89963 * 11 10 8 30 30 H 0.97002 * 119.99629 * 180.02562 * 17 16 14 31 31 H 1.09004 * 110.48748 * 217.71314 * 22 12 11 32 32 H 1.09006 * 110.48391 * 95.06877 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3831 -0.7578 0.8131 5 6 4.7052 -0.4419 0.4802 6 6 4.6749 0.4764 -0.5138 7 7 3.3805 0.7541 -0.8151 8 6 2.9251 1.6992 -1.8376 9 1 1.8378 1.6903 -1.9128 10 6 3.5766 1.3829 -3.2067 11 6 3.5214 2.7222 -3.9704 12 6 3.4362 3.8313 -2.9073 13 1 2.5138 4.3986 -3.0316 14 6 4.6258 4.7491 -3.0224 15 1 5.3256 4.8315 -2.2037 16 6 4.8210 5.4838 -4.1726 17 7 3.9693 5.3832 -5.1696 18 14 6.2953 6.6221 -4.3149 19 1 7.0954 6.5543 -3.0657 20 1 7.1363 6.2013 -5.4643 21 1 5.8267 8.0149 -4.5283 22 6 3.4433 3.1274 -1.5346 23 1 3.0617 -1.4616 1.5666 24 1 5.5923 -0.8600 0.9327 25 1 5.5389 0.9166 -0.9893 26 1 4.6099 1.0626 -3.0726 27 1 3.0049 0.6192 -3.7340 28 1 2.6400 2.7505 -4.6111 29 1 4.4232 2.8477 -4.5696 30 1 4.1069 5.8998 -5.9790 31 1 2.7737 3.6365 -0.8413 32 1 4.4550 3.0891 -1.1307 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 62.258043 kcal Electronic energy + Delta-G solvation = -15377.769907 eV Core-core repulsion = 12917.638847 eV Total energy + Delta-G solvation = -2460.131060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21379 -37.26384 -36.30430 -32.99666 -31.14964 -29.36333 -28.37258 -26.89956 -24.07299 -22.28711 -21.30277 -19.74063 -19.22566 -17.89428 -16.21361 -15.48533 -14.94830 -14.74647 -14.57231 -13.94618 -13.51740 -12.95897 -12.90539 -12.64216 -12.61536 -12.28942 -12.00513 -11.80066 -11.25951 -11.00942 -10.81627 -10.62932 -10.52426 -10.17971 -9.86074 -9.50077 -8.87011 -8.55024 -8.44401 -8.07090 -6.12042 -4.16303 1.58075 2.41172 2.89524 3.23106 3.25229 3.32202 3.35199 3.59925 4.06661 4.35381 4.95920 5.10247 5.27701 5.28906 5.42108 5.49156 5.54061 5.99753 6.12841 6.17683 6.21303 6.25684 6.38036 6.47928 6.71694 6.89000 6.96019 7.11315 7.22597 7.33995 7.54662 7.58331 7.74434 7.84393 8.30408 8.86866 9.48812 10.97230 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.006417 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.917758 B = 4362.296712 C = 4724.733313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.288 3.712 3 C 0.035 3.965 4 C -0.122 4.122 5 C -0.214 4.214 6 C 0.042 3.958 7 N -0.400 5.400 8 C 0.111 3.889 9 H 0.094 0.906 10 C -0.128 4.128 11 C -0.092 4.092 12 C 0.047 3.953 13 H 0.032 0.968 14 C -0.515 4.515 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.118 4.118 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.172 0.828 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -9.579 7.112 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.027 4.027 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.238 4.238 6 C -0.095 4.095 7 N -0.071 5.071 8 C 0.010 3.990 9 H 0.112 0.888 10 C -0.166 4.166 11 C -0.131 4.131 12 C 0.028 3.972 13 H 0.050 0.950 14 C -0.553 4.553 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.156 4.156 23 H 0.161 0.839 24 H 0.161 0.839 25 H 0.189 0.811 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.330 -9.238 6.637 11.379 hybrid contribution 1.171 0.702 -0.252 1.388 sum 1.501 -8.536 6.385 10.765 Atomic orbital electron populations 1.81253 1.11419 1.08943 1.08554 1.24453 0.91096 0.93501 0.93629 1.15748 0.83140 1.05607 1.03326 1.21152 0.92235 1.01157 1.00603 1.20760 0.96969 1.03772 1.02287 1.22033 0.86396 1.00875 1.00220 1.44527 1.05481 1.30332 1.26803 1.23028 0.99586 0.89496 0.86916 0.88755 1.22820 1.00017 1.00342 0.93434 1.22092 1.01816 0.90906 0.98240 1.19234 0.98064 0.92728 0.87153 0.95009 1.21212 1.08946 1.24181 1.00968 0.92440 1.24987 0.96399 0.96735 0.95916 1.69980 1.35866 1.41277 1.05484 0.86565 0.82817 0.80737 0.78084 1.19716 1.20999 1.21025 1.22920 1.00467 0.90981 1.01198 0.83919 0.83880 0.81072 0.91242 0.92567 0.93769 0.90926 0.92965 0.92790 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.15 18.54 41.84 0.78 -6.38 16 2 C 0.29 4.44 14.98 -22.47 -0.34 4.11 16 3 C 0.04 0.50 6.75 -83.50 -0.56 -0.06 16 4 C -0.12 -1.47 10.85 -39.07 -0.42 -1.90 16 5 C -0.21 -2.45 10.81 -39.96 -0.43 -2.89 16 6 C 0.04 0.55 9.82 -16.83 -0.17 0.38 16 7 N -0.40 -5.92 2.76 -104.83 -0.29 -6.21 16 8 C 0.11 1.84 3.57 -65.93 -0.24 1.60 16 9 H 0.09 1.60 7.41 -51.93 -0.38 1.21 16 10 C -0.13 -2.17 6.39 -25.07 -0.16 -2.33 16 11 C -0.09 -1.95 5.60 -25.61 -0.14 -2.09 16 12 C 0.05 1.08 2.82 -90.66 -0.26 0.82 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -13.16 8.32 -34.44 -0.29 -13.45 16 15 H 0.06 1.45 7.54 -52.48 -0.40 1.06 16 16 C 0.06 1.62 5.09 -17.82 -0.09 1.53 16 17 N -0.89 -24.42 12.44 55.43 0.69 -23.73 16 18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -2.21 5.95 -25.06 -0.15 -2.36 16 23 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.17 2.00 7.85 -52.49 -0.41 1.59 16 26 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.71 7.26 -51.93 -0.38 1.33 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16 LS Contribution 276.95 15.07 4.17 4.17 Total: -1.00 -27.31 276.95 -6.90 -34.21 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.98 Total: -0.75 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.24 Total: -16.64 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 1.18 Total: -36.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.31 -6.90 -34.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.469 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds