Wall clock time and date at job start Mon Mar 30 2020 03:04:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.43203 * 179.97438 * 2 1
4 4 C 1.37866 * 126.22422 * 313.01984 * 3 2 1
5 5 C 1.39956 * 107.09941 * 180.14491 * 4 3 2
6 6 C 1.35365 * 107.85805 * 359.61126 * 5 4 3
7 7 N 1.35768 * 108.84822 * 0.24089 * 6 5 4
8 8 C 1.46493 * 125.67805 * 179.97438 * 7 6 5
9 9 H 1.08997 * 110.67325 * 176.79547 * 8 7 6
10 10 C 1.54887 * 110.75931 * 53.35505 * 8 7 6
11 11 C 1.54270 * 104.19607 * 203.74569 * 10 8 7
12 12 C 1.53874 * 106.60186 * 23.60798 * 11 10 8
13 13 H 1.09003 * 110.07132 * 240.69605 * 12 11 10
14 14 C 1.50695 * 110.03109 * 119.28869 * 12 11 10
15 15 H 1.08008 * 119.99819 * 242.83293 * 14 12 11
16 16 C 1.37876 * 120.00201 * 62.83429 * 14 12 11
17 17 N 1.31511 * 119.99963 * 359.97438 * 16 14 12
18 18 Si 1.86799 * 119.99717 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.47323 * 0.02562 * 18 16 14
20 20 H 1.48504 * 109.46643 * 120.00242 * 18 16 14
21 21 H 1.48497 * 109.47411 * 239.99638 * 18 16 14
22 22 C 1.54265 * 106.59611 * 0.02562 * 12 11 10
23 23 H 1.07996 * 126.44925 * 0.02562 * 4 3 2
24 24 H 1.08002 * 126.07445 * 179.88047 * 5 4 3
25 25 H 1.07994 * 125.58024 * 180.21979 * 6 5 4
26 26 H 1.09001 * 110.48608 * 322.41957 * 10 8 7
27 27 H 1.08999 * 110.49052 * 85.06497 * 10 8 7
28 28 H 1.09005 * 110.02964 * 264.32047 * 11 10 8
29 29 H 1.09000 * 110.03227 * 142.89963 * 11 10 8
30 30 H 0.97002 * 119.99629 * 180.02562 * 17 16 14
31 31 H 1.09004 * 110.48748 * 217.71314 * 22 12 11
32 32 H 1.09006 * 110.48391 * 95.06877 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3831 -0.7578 0.8131
5 6 4.7052 -0.4419 0.4802
6 6 4.6749 0.4764 -0.5138
7 7 3.3805 0.7541 -0.8151
8 6 2.9251 1.6992 -1.8376
9 1 1.8378 1.6903 -1.9128
10 6 3.5766 1.3829 -3.2067
11 6 3.5214 2.7222 -3.9704
12 6 3.4362 3.8313 -2.9073
13 1 2.5138 4.3986 -3.0316
14 6 4.6258 4.7491 -3.0224
15 1 5.3256 4.8315 -2.2037
16 6 4.8210 5.4838 -4.1726
17 7 3.9693 5.3832 -5.1696
18 14 6.2953 6.6221 -4.3149
19 1 7.0954 6.5543 -3.0657
20 1 7.1363 6.2013 -5.4643
21 1 5.8267 8.0149 -4.5283
22 6 3.4433 3.1274 -1.5346
23 1 3.0617 -1.4616 1.5666
24 1 5.5923 -0.8600 0.9327
25 1 5.5389 0.9166 -0.9893
26 1 4.6099 1.0626 -3.0726
27 1 3.0049 0.6192 -3.7340
28 1 2.6400 2.7505 -4.6111
29 1 4.4232 2.8477 -4.5696
30 1 4.1069 5.8998 -5.9790
31 1 2.7737 3.6365 -0.8413
32 1 4.4550 3.0891 -1.1307
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260950736.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:20
Heat of formation + Delta-G solvation = 62.258043 kcal
Electronic energy + Delta-G solvation = -15377.769907 eV
Core-core repulsion = 12917.638847 eV
Total energy + Delta-G solvation = -2460.131060 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-41.21379 -37.26384 -36.30430 -32.99666 -31.14964 -29.36333 -28.37258 -26.89956
-24.07299 -22.28711 -21.30277 -19.74063 -19.22566 -17.89428 -16.21361 -15.48533
-14.94830 -14.74647 -14.57231 -13.94618 -13.51740 -12.95897 -12.90539 -12.64216
-12.61536 -12.28942 -12.00513 -11.80066 -11.25951 -11.00942 -10.81627 -10.62932
-10.52426 -10.17971 -9.86074 -9.50077 -8.87011 -8.55024 -8.44401 -8.07090
-6.12042 -4.16303 1.58075 2.41172 2.89524 3.23106 3.25229 3.32202
3.35199 3.59925 4.06661 4.35381 4.95920 5.10247 5.27701 5.28906
5.42108 5.49156 5.54061 5.99753 6.12841 6.17683 6.21303 6.25684
6.38036 6.47928 6.71694 6.89000 6.96019 7.11315 7.22597 7.33995
7.54662 7.58331 7.74434 7.84393 8.30408 8.86866 9.48812 10.97230
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.039211 B = 0.006417 C = 0.005925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.917758 B = 4362.296712 C = 4724.733313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.424 5.424
2 C 0.288 3.712
3 C 0.035 3.965
4 C -0.122 4.122
5 C -0.214 4.214
6 C 0.042 3.958
7 N -0.400 5.400
8 C 0.111 3.889
9 H 0.094 0.906
10 C -0.128 4.128
11 C -0.092 4.092
12 C 0.047 3.953
13 H 0.032 0.968
14 C -0.515 4.515
15 H 0.057 0.943
16 C 0.062 3.938
17 N -0.888 5.888
18 Si 0.890 3.110
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 C -0.118 4.118
23 H 0.143 0.857
24 H 0.143 0.857
25 H 0.172 0.828
26 H 0.069 0.931
27 H 0.056 0.944
28 H 0.043 0.957
29 H 0.072 0.928
30 H 0.261 0.739
31 H 0.053 0.947
32 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.279 -9.579 7.112 12.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.102 5.102
2 C -0.027 4.027
3 C -0.078 4.078
4 C -0.151 4.151
5 C -0.238 4.238
6 C -0.095 4.095
7 N -0.071 5.071
8 C 0.010 3.990
9 H 0.112 0.888
10 C -0.166 4.166
11 C -0.131 4.131
12 C 0.028 3.972
13 H 0.050 0.950
14 C -0.553 4.553
15 H 0.076 0.924
16 C -0.140 4.140
17 N -0.526 5.526
18 Si 0.718 3.282
19 H -0.197 1.197
20 H -0.210 1.210
21 H -0.210 1.210
22 C -0.156 4.156
23 H 0.161 0.839
24 H 0.161 0.839
25 H 0.189 0.811
26 H 0.088 0.912
27 H 0.074 0.926
28 H 0.062 0.938
29 H 0.091 0.909
30 H 0.070 0.930
31 H 0.072 0.928
32 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 0.330 -9.238 6.637 11.379
hybrid contribution 1.171 0.702 -0.252 1.388
sum 1.501 -8.536 6.385 10.765
Atomic orbital electron populations
1.81253 1.11419 1.08943 1.08554 1.24453 0.91096 0.93501 0.93629
1.15748 0.83140 1.05607 1.03326 1.21152 0.92235 1.01157 1.00603
1.20760 0.96969 1.03772 1.02287 1.22033 0.86396 1.00875 1.00220
1.44527 1.05481 1.30332 1.26803 1.23028 0.99586 0.89496 0.86916
0.88755 1.22820 1.00017 1.00342 0.93434 1.22092 1.01816 0.90906
0.98240 1.19234 0.98064 0.92728 0.87153 0.95009 1.21212 1.08946
1.24181 1.00968 0.92440 1.24987 0.96399 0.96735 0.95916 1.69980
1.35866 1.41277 1.05484 0.86565 0.82817 0.80737 0.78084 1.19716
1.20999 1.21025 1.22920 1.00467 0.90981 1.01198 0.83919 0.83880
0.81072 0.91242 0.92567 0.93769 0.90926 0.92965 0.92790 0.91066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -7.15 18.54 41.84 0.78 -6.38 16
2 C 0.29 4.44 14.98 -22.47 -0.34 4.11 16
3 C 0.04 0.50 6.75 -83.50 -0.56 -0.06 16
4 C -0.12 -1.47 10.85 -39.07 -0.42 -1.90 16
5 C -0.21 -2.45 10.81 -39.96 -0.43 -2.89 16
6 C 0.04 0.55 9.82 -16.83 -0.17 0.38 16
7 N -0.40 -5.92 2.76 -104.83 -0.29 -6.21 16
8 C 0.11 1.84 3.57 -65.93 -0.24 1.60 16
9 H 0.09 1.60 7.41 -51.93 -0.38 1.21 16
10 C -0.13 -2.17 6.39 -25.07 -0.16 -2.33 16
11 C -0.09 -1.95 5.60 -25.61 -0.14 -2.09 16
12 C 0.05 1.08 2.82 -90.66 -0.26 0.82 16
13 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16
14 C -0.51 -13.16 8.32 -34.44 -0.29 -13.45 16
15 H 0.06 1.45 7.54 -52.48 -0.40 1.06 16
16 C 0.06 1.62 5.09 -17.82 -0.09 1.53 16
17 N -0.89 -24.42 12.44 55.43 0.69 -23.73 16
18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16
19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 C -0.12 -2.21 5.95 -25.06 -0.15 -2.36 16
23 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16
24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16
25 H 0.17 2.00 7.85 -52.49 -0.41 1.59 16
26 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16
27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.07 1.71 7.26 -51.93 -0.38 1.33 16
30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16
31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16
LS Contribution 276.95 15.07 4.17 4.17
Total: -1.00 -27.31 276.95 -6.90 -34.21
By element:
Atomic # 1 Polarization: 3.23 SS G_CDS: -3.98 Total: -0.75 kcal
Atomic # 6 Polarization: -13.39 SS G_CDS: -3.24 Total: -16.64 kcal
Atomic # 7 Polarization: -37.49 SS G_CDS: 1.18 Total: -36.31 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -27.31 -6.90 -34.21 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260950736.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.469 kcal
(2) G-P(sol) polarization free energy of solvation -27.311 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds