Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37863 * 126.22440 * 284.44908 * 3 2 1 5 5 C 1.39965 * 107.10063 * 179.97438 * 4 3 2 6 6 C 1.35366 * 107.85755 * 359.97438 * 5 4 3 7 7 N 1.35766 * 108.84838 * 0.02562 * 6 5 4 8 8 C 1.46498 * 125.67484 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.42954 * 182.56488 * 8 7 6 10 10 C 1.54886 * 110.48859 * 305.24647 * 8 7 6 11 11 C 1.54889 * 102.74706 * 156.62238 * 10 8 7 12 12 C 1.54265 * 104.19752 * 322.06090 * 11 10 8 13 13 H 1.09008 * 110.07077 * 264.30312 * 12 11 10 14 14 C 1.50699 * 110.03580 * 142.89563 * 12 11 10 15 15 H 1.08002 * 120.00006 * 242.83973 * 14 12 11 16 16 C 1.37881 * 120.00044 * 62.83020 * 14 12 11 17 17 N 1.31513 * 119.99629 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 119.99827 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47537 * 90.00237 * 18 16 14 20 20 H 1.48505 * 109.46878 * 210.00158 * 18 16 14 21 21 H 1.48500 * 109.47298 * 329.99734 * 18 16 14 22 22 C 1.53869 * 106.59797 * 23.60743 * 12 11 10 23 23 H 1.08001 * 126.45334 * 0.25802 * 4 3 2 24 24 H 1.07999 * 126.07004 * 179.97438 * 5 4 3 25 25 H 1.07998 * 125.57003 * 179.97438 * 6 5 4 26 26 H 1.08999 * 110.75917 * 274.94084 * 10 8 7 27 27 H 1.09007 * 110.75354 * 38.31105 * 10 8 7 28 28 H 1.09002 * 110.48545 * 203.38558 * 11 10 8 29 29 H 1.09001 * 110.48896 * 80.73778 * 11 10 8 30 30 H 0.97008 * 119.99440 * 179.97438 * 17 16 14 31 31 H 1.09003 * 110.03405 * 240.71359 * 22 12 11 32 32 H 1.09002 * 110.07371 * 119.30738 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3827 -0.2765 1.0770 5 6 4.7051 -0.1621 0.6328 6 6 4.6750 0.1747 -0.6780 7 7 3.3807 0.2770 -1.0750 8 6 2.9256 0.6241 -2.4235 9 1 1.8375 0.6796 -2.4553 10 6 3.5532 1.9649 -2.8791 11 6 3.4871 1.8658 -4.4234 12 6 3.8010 0.3851 -4.7213 13 1 4.8602 0.2659 -4.9499 14 6 2.9660 -0.0968 -5.8796 15 1 2.2467 -0.8892 -5.7340 16 6 3.1201 0.4741 -7.1252 17 7 3.9962 1.4388 -7.3025 18 14 2.0846 -0.1227 -8.5607 19 1 0.8292 0.6676 -8.6279 20 1 2.8453 0.0482 -9.8246 21 1 1.7562 -1.5584 -8.3710 22 6 3.4440 -0.4043 -3.4498 23 1 3.0613 -0.5377 2.0744 24 1 5.5919 -0.3153 1.2298 25 1 5.5393 0.3364 -1.3050 26 1 2.9639 2.8088 -2.5206 27 1 4.5865 2.0424 -2.5409 28 1 4.2357 2.5137 -4.8796 29 1 2.4898 2.1235 -4.7800 30 1 4.1049 1.8402 -8.1789 31 1 4.3300 -0.9061 -3.0607 32 1 2.6670 -1.1365 -3.6697 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = 62.724779 kcal Electronic energy + Delta-G solvation = -15375.153774 eV Core-core repulsion = 12915.042954 eV Total energy + Delta-G solvation = -2460.110820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23106 -37.25535 -36.28774 -32.97678 -31.14859 -29.36634 -28.41442 -26.85427 -24.10079 -22.26966 -21.22036 -19.74480 -19.32920 -17.74075 -16.55978 -15.64616 -14.77757 -14.61083 -14.37019 -13.86069 -13.62137 -12.92233 -12.88897 -12.68292 -12.61435 -12.27962 -12.06225 -11.89300 -11.23031 -10.96908 -10.88246 -10.64189 -10.38669 -10.18925 -9.82353 -9.53946 -8.90560 -8.54946 -8.45266 -8.07950 -6.11942 -4.15302 1.58418 2.42446 2.88199 3.24716 3.26521 3.32209 3.35332 3.61180 4.07632 4.36153 4.95795 5.11397 5.24511 5.30105 5.44964 5.47584 5.54832 6.00440 6.08803 6.16750 6.22567 6.30757 6.34075 6.46997 6.72955 6.88433 6.96634 7.10409 7.21878 7.34259 7.55087 7.60377 7.69984 7.86868 8.30131 8.87051 9.49774 10.97444 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036746 B = 0.006498 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.801305 B = 4308.045373 C = 4687.613706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.287 3.713 3 C 0.038 3.962 4 C -0.123 4.123 5 C -0.214 4.214 6 C 0.039 3.961 7 N -0.401 5.401 8 C 0.116 3.884 9 H 0.095 0.905 10 C -0.134 4.134 11 C -0.092 4.092 12 C 0.048 3.952 13 H 0.034 0.966 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.120 4.120 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.170 0.830 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -0.697 11.972 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.028 4.028 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.237 4.237 6 C -0.098 4.098 7 N -0.073 5.073 8 C 0.016 3.984 9 H 0.113 0.887 10 C -0.172 4.172 11 C -0.131 4.131 12 C 0.029 3.971 13 H 0.053 0.947 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.158 4.158 23 H 0.161 0.839 24 H 0.161 0.839 25 H 0.188 0.812 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.197 -0.487 11.441 11.513 hybrid contribution -0.154 -0.248 -0.920 0.965 sum 1.043 -0.736 10.521 10.598 Atomic orbital electron populations 1.81253 1.11425 1.10808 1.06496 1.24445 0.91099 0.93033 0.94214 1.15759 0.83168 1.18614 0.90051 1.21154 0.92227 1.04837 0.97025 1.20755 0.96966 1.11294 0.94715 1.21984 0.86390 1.05043 0.96406 1.44641 1.05446 1.48507 1.08675 1.22862 0.99915 0.98045 0.77612 0.88707 1.23018 0.99932 0.93905 1.00325 1.22321 1.01836 1.00258 0.88662 1.19226 0.97429 0.90220 0.90184 0.94750 1.21250 1.21365 1.19579 0.93494 0.92585 1.24972 0.95238 0.94951 0.98702 1.69951 1.34309 1.25027 1.23341 0.86631 0.80342 0.79276 0.82019 1.20667 1.21161 1.19899 1.22736 1.00145 0.97179 0.95780 0.83914 0.83895 0.81227 0.92349 0.91348 0.91510 0.92388 0.92929 0.92572 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.28 18.54 41.83 0.78 -6.50 16 2 C 0.29 4.51 14.97 -22.48 -0.34 4.17 16 3 C 0.04 0.54 6.75 -83.50 -0.56 -0.02 16 4 C -0.12 -1.48 10.85 -39.07 -0.42 -1.90 16 5 C -0.21 -2.40 10.81 -39.96 -0.43 -2.83 16 6 C 0.04 0.50 9.71 -16.83 -0.16 0.33 16 7 N -0.40 -5.92 2.74 -105.20 -0.29 -6.21 16 8 C 0.12 1.96 3.53 -66.28 -0.23 1.72 16 9 H 0.09 1.68 7.39 -51.93 -0.38 1.29 16 10 C -0.13 -2.24 6.45 -24.74 -0.16 -2.40 16 11 C -0.09 -1.95 5.44 -25.07 -0.14 -2.09 16 12 C 0.05 1.10 2.82 -90.66 -0.26 0.84 16 13 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 14 C -0.52 -13.51 8.36 -34.44 -0.29 -13.80 16 15 H 0.06 1.46 7.33 -52.49 -0.38 1.08 16 16 C 0.06 1.69 5.33 -17.82 -0.09 1.60 16 17 N -0.89 -24.39 12.43 55.43 0.69 -23.70 16 18 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.12 -2.27 6.11 -25.62 -0.16 -2.43 16 23 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 25 H 0.17 1.87 7.91 -52.49 -0.42 1.45 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.05 7.31 -51.92 -0.38 0.67 16 28 H 0.07 1.50 7.97 -51.93 -0.41 1.09 16 29 H 0.06 1.33 7.85 -51.93 -0.41 0.92 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.06 0.98 7.36 -51.93 -0.38 0.60 16 32 H 0.06 1.30 7.37 -51.93 -0.38 0.92 16 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -27.51 276.90 -6.89 -34.40 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.98 Total: -1.08 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.24 Total: -16.81 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 1.18 Total: -36.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.51 -6.89 -34.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.127 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds