Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37863 * 126.22440 * 284.44908 * 3 2 1 5 5 C 1.39965 * 107.10063 * 179.97438 * 4 3 2 6 6 C 1.35366 * 107.85755 * 359.97438 * 5 4 3 7 7 N 1.35766 * 108.84838 * 0.02562 * 6 5 4 8 8 C 1.46498 * 125.67484 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.42954 * 182.56488 * 8 7 6 10 10 C 1.54886 * 110.48859 * 305.24647 * 8 7 6 11 11 C 1.54889 * 102.74706 * 156.62238 * 10 8 7 12 12 C 1.54265 * 104.19752 * 322.06090 * 11 10 8 13 13 H 1.09008 * 110.07077 * 264.30312 * 12 11 10 14 14 C 1.50699 * 110.03580 * 142.89563 * 12 11 10 15 15 H 1.08002 * 120.00006 * 242.83973 * 14 12 11 16 16 C 1.37881 * 120.00044 * 62.83020 * 14 12 11 17 17 N 1.31513 * 119.99629 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 119.99827 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47537 * 90.00237 * 18 16 14 20 20 H 1.48505 * 109.46878 * 210.00158 * 18 16 14 21 21 H 1.48500 * 109.47298 * 329.99734 * 18 16 14 22 22 C 1.53869 * 106.59797 * 23.60743 * 12 11 10 23 23 H 1.08001 * 126.45334 * 0.25802 * 4 3 2 24 24 H 1.07999 * 126.07004 * 179.97438 * 5 4 3 25 25 H 1.07998 * 125.57003 * 179.97438 * 6 5 4 26 26 H 1.08999 * 110.75917 * 274.94084 * 10 8 7 27 27 H 1.09007 * 110.75354 * 38.31105 * 10 8 7 28 28 H 1.09002 * 110.48545 * 203.38558 * 11 10 8 29 29 H 1.09001 * 110.48896 * 80.73778 * 11 10 8 30 30 H 0.97008 * 119.99440 * 179.97438 * 17 16 14 31 31 H 1.09003 * 110.03405 * 240.71359 * 22 12 11 32 32 H 1.09002 * 110.07371 * 119.30738 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3827 -0.2765 1.0770 5 6 4.7051 -0.1621 0.6328 6 6 4.6750 0.1747 -0.6780 7 7 3.3807 0.2770 -1.0750 8 6 2.9256 0.6241 -2.4235 9 1 1.8375 0.6796 -2.4553 10 6 3.5532 1.9649 -2.8791 11 6 3.4871 1.8658 -4.4234 12 6 3.8010 0.3851 -4.7213 13 1 4.8602 0.2659 -4.9499 14 6 2.9660 -0.0968 -5.8796 15 1 2.2467 -0.8892 -5.7340 16 6 3.1201 0.4741 -7.1252 17 7 3.9962 1.4388 -7.3025 18 14 2.0846 -0.1227 -8.5607 19 1 0.8292 0.6676 -8.6279 20 1 2.8453 0.0482 -9.8246 21 1 1.7562 -1.5584 -8.3710 22 6 3.4440 -0.4043 -3.4498 23 1 3.0613 -0.5377 2.0744 24 1 5.5919 -0.3153 1.2298 25 1 5.5393 0.3364 -1.3050 26 1 2.9639 2.8088 -2.5206 27 1 4.5865 2.0424 -2.5409 28 1 4.2357 2.5137 -4.8796 29 1 2.4898 2.1235 -4.7800 30 1 4.1049 1.8402 -8.1789 31 1 4.3300 -0.9061 -3.0607 32 1 2.6670 -1.1365 -3.6697 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = 49.477006 kcal Electronic energy + Delta-G solvation = -15375.728241 eV Core-core repulsion = 12915.042954 eV Total energy + Delta-G solvation = -2460.685287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29869 -38.78452 -37.52222 -34.79035 -32.55060 -30.40176 -30.04752 -28.36295 -25.92106 -23.37396 -22.39463 -21.08359 -20.87065 -19.00062 -18.47963 -16.81361 -16.52923 -16.00250 -15.66582 -15.19704 -14.95330 -14.37661 -14.15658 -14.12677 -14.01820 -13.68605 -13.16476 -13.06296 -12.97408 -12.74550 -12.49851 -12.25679 -12.06434 -11.68162 -11.59496 -11.30655 -10.82334 -10.50526 -9.58301 -9.09402 -8.16068 -6.24574 0.50006 1.25621 1.37722 1.40233 1.48653 1.94474 2.11142 2.40475 2.49067 2.92873 3.15340 3.60374 3.77597 4.02830 4.28533 4.44299 4.54872 4.60704 4.74347 4.79092 4.82910 4.90990 5.05750 5.25892 5.31097 5.34764 5.39811 5.62633 5.85464 5.92302 5.95231 6.13717 6.29667 6.34241 6.45126 6.85433 7.42909 8.92362 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036746 B = 0.006498 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.801305 B = 4308.045373 C = 4687.613706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.300 3.700 3 C 0.006 3.994 4 C -0.103 4.103 5 C -0.202 4.202 6 C 0.035 3.965 7 N -0.413 5.413 8 C 0.132 3.868 9 H 0.081 0.919 10 C -0.117 4.117 11 C -0.085 4.085 12 C 0.042 3.958 13 H 0.012 0.988 14 C -0.536 4.536 15 H 0.049 0.951 16 C 0.017 3.983 17 N -0.914 5.914 18 Si 0.945 3.055 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.109 4.109 23 H 0.169 0.831 24 H 0.176 0.824 25 H 0.187 0.813 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -1.065 13.738 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.013 4.013 3 C -0.106 4.106 4 C -0.133 4.133 5 C -0.226 4.226 6 C -0.101 4.101 7 N -0.087 5.087 8 C 0.029 3.971 9 H 0.099 0.901 10 C -0.155 4.155 11 C -0.123 4.123 12 C 0.023 3.977 13 H 0.030 0.970 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.148 4.148 23 H 0.187 0.813 24 H 0.194 0.806 25 H 0.204 0.796 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.185 -0.866 13.231 13.438 hybrid contribution -0.371 -0.168 -1.418 1.475 sum 1.814 -1.034 11.814 11.997 Atomic orbital electron populations 1.81254 1.12548 1.12605 1.07685 1.24730 0.91460 0.91967 0.93173 1.15970 0.82558 1.21122 0.90926 1.21597 0.92169 1.02160 0.97335 1.21162 0.97669 1.09537 0.94184 1.22503 0.85858 1.04328 0.97453 1.44455 1.06330 1.50175 1.07699 1.22382 0.99001 0.96989 0.78688 0.90087 1.22859 1.01591 0.94537 0.96545 1.22053 0.99515 0.98673 0.92092 1.19190 0.95451 0.91866 0.91183 0.97021 1.21634 1.21484 1.19297 0.94948 0.93325 1.25648 0.96327 0.95231 1.01004 1.70048 1.35520 1.25948 1.23756 0.85756 0.78937 0.78826 0.79372 1.20471 1.20731 1.19568 1.22508 1.00442 0.96973 0.94838 0.81328 0.80632 0.79620 0.91008 0.89180 0.93415 0.94954 0.92979 0.90820 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.91 18.54 19.00 0.35 -15.56 16 2 C 0.30 9.18 14.97 88.33 1.32 10.50 16 3 C 0.01 0.16 6.75 39.40 0.27 0.43 16 4 C -0.10 -2.07 10.85 22.60 0.25 -1.83 16 5 C -0.20 -3.59 10.81 22.02 0.24 -3.35 16 6 C 0.03 0.75 9.71 83.42 0.81 1.56 16 7 N -0.41 -11.22 2.74 -486.73 -1.33 -12.55 16 8 C 0.13 4.28 3.53 46.06 0.16 4.44 16 9 H 0.08 2.86 7.39 -2.39 -0.02 2.85 16 10 C -0.12 -3.78 6.45 31.88 0.21 -3.58 16 11 C -0.08 -3.63 5.44 31.67 0.17 -3.46 16 12 C 0.04 1.94 2.82 -10.82 -0.03 1.91 16 13 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 14 C -0.54 -28.49 8.36 25.60 0.21 -28.28 16 15 H 0.05 2.59 7.33 -2.91 -0.02 2.57 16 16 C 0.02 0.94 5.33 84.66 0.45 1.39 16 17 N -0.91 -51.15 12.43 21.45 0.27 -50.88 16 18 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.11 -4.09 6.11 31.32 0.19 -3.90 16 23 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 24 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 25 H 0.19 3.33 7.91 -2.91 -0.02 3.31 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 2.53 7.31 -2.38 -0.02 2.51 16 28 H 0.05 2.19 7.97 -2.39 -0.02 2.17 16 29 H 0.03 1.51 7.85 -2.39 -0.02 1.50 16 30 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 31 H 0.07 2.46 7.36 -2.39 -0.02 2.44 16 32 H 0.05 2.02 7.37 -2.39 -0.02 2.01 16 Total: -1.00 -60.18 276.90 6.67 -53.51 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.11 Total: 4.58 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.25 Total: -24.17 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -0.71 Total: -78.99 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -60.18 6.67 -53.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.985 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds