Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37867 * 126.22808 * 52.61760 * 3 2 1 5 5 C 1.39956 * 107.10060 * 179.97438 * 4 3 2 6 6 C 1.35363 * 107.86108 * 359.74069 * 5 4 3 7 7 N 1.35761 * 108.84465 * 0.42616 * 6 5 4 8 8 C 1.46505 * 125.67837 * 179.83105 * 7 6 5 9 9 H 1.08994 * 110.02276 * 181.08579 * 8 7 6 10 10 C 1.53879 * 110.07017 * 302.50641 * 8 7 6 11 11 C 1.54467 * 106.68590 * 119.46608 * 10 8 7 12 12 C 1.54892 * 104.09928 * 23.33708 * 11 10 8 13 13 H 1.09000 * 110.75367 * 80.71380 * 12 11 10 14 14 C 1.50706 * 110.75410 * 203.89345 * 12 11 10 15 15 H 1.08005 * 119.99758 * 116.06837 * 14 12 11 16 16 C 1.37871 * 120.00102 * 296.06722 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54265 * 110.03050 * 59.69367 * 8 7 6 23 23 H 1.08002 * 126.44493 * 0.02562 * 4 3 2 24 24 H 1.08004 * 126.06561 * 179.97438 * 5 4 3 25 25 H 1.07995 * 125.57787 * 180.29814 * 6 5 4 26 26 H 1.08995 * 110.02820 * 238.58554 * 10 8 7 27 27 H 1.08996 * 110.03650 * 359.97096 * 10 8 7 28 28 H 1.09004 * 110.40474 * 264.75755 * 11 10 8 29 29 H 1.08999 * 110.66617 * 142.04902 * 11 10 8 30 30 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 31 31 H 1.09000 * 110.48486 * 98.38496 * 22 8 7 32 32 H 1.08999 * 110.60293 * 335.79362 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3831 -0.6742 -0.8837 5 6 4.7052 -0.3947 -0.5197 6 6 4.6749 0.4318 0.5519 7 7 3.3806 0.6752 0.8815 8 6 2.9251 1.5206 1.9879 9 1 1.8361 1.5223 2.0324 10 6 3.5062 1.0086 3.3176 11 6 4.3609 2.1563 3.8993 12 6 3.7779 3.4316 3.2415 13 1 2.8743 3.7544 3.7586 14 6 4.8020 4.5371 3.2198 15 1 5.1669 4.9166 2.2768 16 6 5.2731 5.0638 4.4036 17 7 4.8291 4.6013 5.5519 18 14 6.5430 6.4335 4.3766 19 1 6.8819 6.8219 5.7692 20 1 7.7673 5.9598 3.6824 21 1 5.9888 7.6082 3.6566 22 6 3.4487 2.9599 1.8034 23 1 3.0617 -1.3000 -1.7032 24 1 5.5922 -0.7688 -1.0094 25 1 5.5390 0.8305 1.0625 26 1 2.6991 0.7619 4.0073 27 1 4.1270 0.1304 3.1403 28 1 5.4075 2.0286 3.6226 29 1 4.2549 2.2035 4.9831 30 1 4.1700 3.8898 5.5659 31 1 2.6787 3.5922 1.3615 32 1 4.3465 2.9652 1.1853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 61.245831 kcal Electronic energy + Delta-G solvation = -15445.017454 eV Core-core repulsion = 12984.842502 eV Total energy + Delta-G solvation = -2460.174952 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31296 -37.44552 -36.36421 -33.26162 -31.05091 -29.38875 -28.47093 -26.81312 -23.97538 -22.31657 -21.17798 -19.97876 -19.65858 -17.82719 -16.79708 -15.54303 -15.24230 -14.71598 -13.98610 -13.82427 -13.71234 -13.11044 -13.00567 -12.91632 -12.68916 -12.32121 -12.09653 -11.98562 -11.24018 -11.03821 -10.82084 -10.75321 -10.39040 -10.15219 -9.96497 -9.70301 -8.70672 -8.52667 -8.43730 -8.11496 -6.42464 -4.16850 1.52638 2.34883 2.85460 3.18584 3.38863 3.39703 3.54328 3.58554 4.00121 4.45434 4.79789 5.06847 5.22125 5.28591 5.31871 5.43172 5.48554 5.82691 5.99582 6.08461 6.14567 6.14876 6.26849 6.31292 6.53654 6.71105 6.81061 6.85331 7.11114 7.16459 7.29199 7.46543 7.52830 8.09500 8.33211 8.77970 9.55154 10.94845 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039364 B = 0.006385 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.144065 B = 4384.153393 C = 4635.993688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.288 3.712 3 C 0.033 3.967 4 C -0.121 4.121 5 C -0.214 4.214 6 C 0.045 3.955 7 N -0.402 5.402 8 C 0.117 3.883 9 H 0.088 0.912 10 C -0.134 4.134 11 C -0.116 4.116 12 C 0.036 3.964 13 H 0.026 0.974 14 C -0.596 4.596 15 H 0.050 0.950 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 1.066 2.934 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.288 1.288 22 C -0.115 4.115 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.172 0.828 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.057 0.943 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -8.622 -8.371 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.027 4.027 3 C -0.080 4.080 4 C -0.150 4.150 5 C -0.237 4.237 6 C -0.092 4.092 7 N -0.075 5.075 8 C 0.016 3.984 9 H 0.106 0.894 10 C -0.172 4.172 11 C -0.154 4.154 12 C 0.018 3.982 13 H 0.044 0.956 14 C -0.634 4.634 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.547 5.547 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.153 4.153 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.190 0.810 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.179 -7.398 -7.072 10.236 hybrid contribution -0.556 -1.014 -0.994 1.525 sum -0.734 -8.412 -8.066 11.677 Atomic orbital electron populations 1.81255 1.11405 1.09464 1.08095 1.24452 0.91092 0.93354 0.93754 1.15756 0.83133 1.08868 1.00228 1.21167 0.92225 1.01974 0.99601 1.20779 0.97004 1.05373 1.00585 1.22064 0.86360 1.01466 0.99348 1.44631 1.05512 1.34679 1.22655 1.22609 0.99353 0.91593 0.84822 0.89383 1.22662 1.00316 0.99970 0.94237 1.22658 0.98433 0.94134 1.00188 1.19733 0.96343 0.93105 0.89054 0.95642 1.21876 1.25980 1.20545 0.94983 0.93135 1.25783 0.99726 1.00553 0.92202 1.70828 1.29483 1.27502 1.26905 0.83578 0.75569 0.75462 0.75974 1.20778 1.21377 1.21472 1.22800 1.00326 0.90560 1.01616 0.83852 0.83790 0.81035 0.91572 0.91535 0.92090 0.91793 0.91615 0.92381 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.06 18.54 41.84 0.78 -6.28 16 2 C 0.29 4.39 14.95 -22.48 -0.34 4.06 16 3 C 0.03 0.47 6.75 -83.50 -0.56 -0.09 16 4 C -0.12 -1.45 10.85 -39.07 -0.42 -1.88 16 5 C -0.21 -2.49 10.81 -39.96 -0.43 -2.92 16 6 C 0.04 0.60 9.73 -16.84 -0.16 0.43 16 7 N -0.40 -5.96 2.64 -105.76 -0.28 -6.24 16 8 C 0.12 1.92 3.57 -66.81 -0.24 1.68 16 9 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 10 C -0.13 -2.21 6.38 -25.50 -0.16 -2.37 16 11 C -0.12 -2.36 5.62 -24.96 -0.14 -2.50 16 12 C 0.04 0.83 2.40 -89.77 -0.22 0.61 16 13 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 14 C -0.60 -15.54 8.52 -34.44 -0.29 -15.83 16 15 H 0.05 1.32 7.78 -52.48 -0.41 0.91 16 16 C 0.02 0.59 5.35 -17.82 -0.10 0.50 16 17 N -0.91 -25.92 13.45 55.43 0.75 -25.17 16 18 Si 1.07 23.97 29.90 -169.99 -5.08 18.88 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.11 -2.18 5.88 -25.07 -0.15 -2.33 16 23 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 25 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.01 7.43 -51.93 -0.39 0.63 16 28 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 29 H 0.06 1.40 6.47 -51.93 -0.34 1.07 16 30 H 0.27 7.57 5.40 -40.82 -0.22 7.35 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.40 7.25 -51.93 -0.38 1.03 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -28.22 274.86 -6.76 -34.98 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.85 Total: 0.32 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.21 Total: -20.63 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.24 Total: -37.69 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.22 -6.76 -34.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.227 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds