Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37867 * 126.22808 * 52.61760 * 3 2 1 5 5 C 1.39956 * 107.10060 * 179.97438 * 4 3 2 6 6 C 1.35363 * 107.86108 * 359.74069 * 5 4 3 7 7 N 1.35761 * 108.84465 * 0.42616 * 6 5 4 8 8 C 1.46505 * 125.67837 * 179.83105 * 7 6 5 9 9 H 1.08994 * 110.02276 * 181.08579 * 8 7 6 10 10 C 1.53879 * 110.07017 * 302.50641 * 8 7 6 11 11 C 1.54467 * 106.68590 * 119.46608 * 10 8 7 12 12 C 1.54892 * 104.09928 * 23.33708 * 11 10 8 13 13 H 1.09000 * 110.75367 * 80.71380 * 12 11 10 14 14 C 1.50706 * 110.75410 * 203.89345 * 12 11 10 15 15 H 1.08005 * 119.99758 * 116.06837 * 14 12 11 16 16 C 1.37871 * 120.00102 * 296.06722 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54265 * 110.03050 * 59.69367 * 8 7 6 23 23 H 1.08002 * 126.44493 * 0.02562 * 4 3 2 24 24 H 1.08004 * 126.06561 * 179.97438 * 5 4 3 25 25 H 1.07995 * 125.57787 * 180.29814 * 6 5 4 26 26 H 1.08995 * 110.02820 * 238.58554 * 10 8 7 27 27 H 1.08996 * 110.03650 * 359.97096 * 10 8 7 28 28 H 1.09004 * 110.40474 * 264.75755 * 11 10 8 29 29 H 1.08999 * 110.66617 * 142.04902 * 11 10 8 30 30 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 31 31 H 1.09000 * 110.48486 * 98.38496 * 22 8 7 32 32 H 1.08999 * 110.60293 * 335.79362 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3831 -0.6742 -0.8837 5 6 4.7052 -0.3947 -0.5197 6 6 4.6749 0.4318 0.5519 7 7 3.3806 0.6752 0.8815 8 6 2.9251 1.5206 1.9879 9 1 1.8361 1.5223 2.0324 10 6 3.5062 1.0086 3.3176 11 6 4.3609 2.1563 3.8993 12 6 3.7779 3.4316 3.2415 13 1 2.8743 3.7544 3.7586 14 6 4.8020 4.5371 3.2198 15 1 5.1669 4.9166 2.2768 16 6 5.2731 5.0638 4.4036 17 7 4.8291 4.6013 5.5519 18 14 6.5430 6.4335 4.3766 19 1 6.8819 6.8219 5.7692 20 1 7.7673 5.9598 3.6824 21 1 5.9888 7.6082 3.6566 22 6 3.4487 2.9599 1.8034 23 1 3.0617 -1.3000 -1.7032 24 1 5.5922 -0.7688 -1.0094 25 1 5.5390 0.8305 1.0625 26 1 2.6991 0.7619 4.0073 27 1 4.1270 0.1304 3.1403 28 1 5.4075 2.0286 3.6226 29 1 4.2549 2.2035 4.9831 30 1 4.1700 3.8898 5.5659 31 1 2.6787 3.5922 1.3615 32 1 4.3465 2.9652 1.1853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 47.635220 kcal Electronic energy + Delta-G solvation = -15445.607655 eV Core-core repulsion = 12984.842502 eV Total energy + Delta-G solvation = -2460.765153 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40037 -38.97514 -37.56693 -35.05298 -32.44222 -30.43875 -30.08348 -28.29760 -25.87546 -23.41958 -22.36802 -21.52453 -20.99881 -19.27694 -18.50607 -16.80190 -16.63410 -15.89800 -15.63954 -15.28546 -15.09261 -14.50150 -14.32221 -14.14917 -14.09697 -13.82122 -13.24630 -13.04073 -12.88132 -12.64207 -12.39159 -12.35178 -11.93623 -11.87676 -11.67427 -11.42551 -10.57586 -10.46495 -9.66245 -9.15065 -8.54917 -6.29853 0.44183 1.19679 1.56454 1.62569 1.81610 1.88181 2.04425 2.44138 2.59553 2.86469 3.21775 3.46030 3.65844 3.84541 4.21467 4.33863 4.45428 4.47440 4.57191 4.60584 4.72071 4.80468 4.86785 5.05570 5.19408 5.23945 5.29540 5.39868 5.62812 5.89471 6.08996 6.10171 6.22462 6.25777 6.38861 6.68210 7.49607 8.83253 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039364 B = 0.006385 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.144065 B = 4384.153393 C = 4635.993688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.302 3.698 3 C 0.009 3.991 4 C -0.102 4.102 5 C -0.201 4.201 6 C 0.034 3.966 7 N -0.414 5.414 8 C 0.131 3.869 9 H 0.088 0.912 10 C -0.120 4.120 11 C -0.105 4.105 12 C 0.024 3.976 13 H -0.003 1.003 14 C -0.606 4.606 15 H 0.047 0.953 16 C -0.027 4.027 17 N -0.939 5.939 18 Si 1.108 2.892 19 H -0.288 1.288 20 H -0.268 1.268 21 H -0.276 1.276 22 C -0.104 4.104 23 H 0.172 0.828 24 H 0.175 0.825 25 H 0.177 0.823 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -9.785 -10.099 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.012 4.012 3 C -0.103 4.103 4 C -0.131 4.131 5 C -0.225 4.225 6 C -0.102 4.102 7 N -0.088 5.088 8 C 0.029 3.971 9 H 0.106 0.894 10 C -0.158 4.158 11 C -0.143 4.143 12 C 0.005 3.995 13 H 0.016 0.984 14 C -0.644 4.644 15 H 0.065 0.935 16 C -0.226 4.226 17 N -0.577 5.577 18 Si 0.931 3.069 19 H -0.214 1.214 20 H -0.193 1.193 21 H -0.202 1.202 22 C -0.142 4.142 23 H 0.189 0.811 24 H 0.192 0.808 25 H 0.194 0.806 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.962 -8.583 -8.833 12.353 hybrid contribution -0.883 -0.670 -0.519 1.224 sum 0.079 -9.253 -9.352 13.156 Atomic orbital electron populations 1.81264 1.12357 1.10800 1.09280 1.24635 0.91298 0.92426 0.92843 1.15952 0.82658 1.10366 1.01306 1.21604 0.91959 1.00539 0.99006 1.21159 0.97876 1.03947 0.99474 1.22410 0.85875 1.01877 1.00070 1.44482 1.06188 1.35369 1.22761 1.22204 0.99121 0.90284 0.85466 0.89421 1.22523 1.00130 0.98885 0.94296 1.22394 0.98529 0.94659 0.98730 1.19719 0.94562 0.93520 0.91672 0.98440 1.22256 1.26174 1.21243 0.94681 0.93511 1.27065 1.01170 1.02308 0.92017 1.70923 1.30595 1.28391 1.27816 0.83025 0.74363 0.73561 0.75923 1.21369 1.19326 1.20197 1.22591 1.00335 0.92394 0.98893 0.81080 0.80756 0.80575 0.90695 0.89567 0.92877 0.94001 0.92503 0.92739 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.91 18.54 19.00 0.35 -14.56 16 2 C 0.30 8.76 14.95 88.33 1.32 10.08 16 3 C 0.01 0.23 6.75 39.40 0.27 0.50 16 4 C -0.10 -2.05 10.85 22.60 0.25 -1.81 16 5 C -0.20 -3.83 10.81 22.02 0.24 -3.59 16 6 C 0.03 0.80 9.73 83.42 0.81 1.61 16 7 N -0.41 -11.35 2.64 -488.52 -1.29 -12.64 16 8 C 0.13 4.16 3.57 45.72 0.16 4.32 16 9 H 0.09 2.80 7.36 -2.39 -0.02 2.78 16 10 C -0.12 -3.84 6.38 31.39 0.20 -3.64 16 11 C -0.10 -4.31 5.62 31.74 0.18 -4.14 16 12 C 0.02 1.12 2.40 -10.25 -0.02 1.09 16 13 H 0.00 -0.13 8.00 -2.39 -0.02 -0.15 16 14 C -0.61 -31.97 8.52 25.60 0.22 -31.75 16 15 H 0.05 2.44 7.78 -2.91 -0.02 2.42 16 16 C -0.03 -1.45 5.35 84.65 0.45 -1.00 16 17 N -0.94 -54.70 13.45 21.45 0.29 -54.41 16 18 Si 1.11 48.15 29.90 68.60 2.05 50.20 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 22 C -0.10 -3.91 5.88 31.67 0.19 -3.73 16 23 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 24 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 25 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.09 2.43 7.43 -2.39 -0.02 2.41 16 28 H 0.05 2.23 8.04 -2.38 -0.02 2.22 16 29 H 0.04 1.89 6.47 -2.39 -0.02 1.87 16 30 H 0.26 15.25 5.40 -92.71 -0.50 14.75 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.77 7.25 -2.39 -0.02 2.75 16 Total: -1.00 -61.23 274.86 7.04 -54.19 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.38 Total: 9.28 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.26 Total: -32.05 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -0.65 Total: -81.61 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Total: -61.23 7.04 -54.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.829 kcal (2) G-P(sol) polarization free energy of solvation -61.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds