Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37865 * 126.22145 * 132.32484 * 3 2 1 5 5 C 1.39954 * 107.10043 * 180.02562 * 4 3 2 6 6 C 1.35365 * 107.86015 * 0.02562 * 5 4 3 7 7 N 1.35758 * 108.84582 * 359.97438 * 6 5 4 8 8 C 1.46505 * 125.68093 * 180.02562 * 7 6 5 9 9 H 1.08988 * 110.01894 * 179.29787 * 8 7 6 10 10 C 1.53879 * 110.02857 * 57.90830 * 8 7 6 11 11 C 1.54270 * 106.60050 * 240.71704 * 10 8 7 12 12 C 1.54889 * 104.19382 * 23.61282 * 11 10 8 13 13 H 1.09000 * 110.75771 * 80.55393 * 12 11 10 14 14 C 1.50700 * 110.75650 * 203.74353 * 12 11 10 15 15 H 1.08004 * 120.00109 * 118.54260 * 14 12 11 16 16 C 1.37874 * 119.99931 * 298.54476 * 14 12 11 17 17 N 1.31511 * 119.99940 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99901 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47364 * 60.00113 * 18 16 14 20 20 H 1.48504 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47091 * 300.00008 * 18 16 14 22 22 C 1.54265 * 110.03263 * 300.69821 * 8 7 6 23 23 H 1.08007 * 126.44917 * 359.77202 * 4 3 2 24 24 H 1.08009 * 126.07017 * 179.97438 * 5 4 3 25 25 H 1.07995 * 125.57615 * 180.02562 * 6 5 4 26 26 H 1.09001 * 110.03109 * 0.02562 * 10 8 7 27 27 H 1.09001 * 110.03221 * 121.38495 * 10 8 7 28 28 H 1.08992 * 110.48587 * 142.28848 * 11 10 8 29 29 H 1.08998 * 110.48533 * 264.80217 * 11 10 8 30 30 H 0.97004 * 119.99863 * 179.97438 * 17 16 14 31 31 H 1.09004 * 110.48528 * 214.35388 * 22 8 7 32 32 H 1.09004 * 110.48449 * 336.98919 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3823 0.7499 -0.8223 5 6 4.7047 0.4414 -0.4838 6 6 4.6754 -0.4706 0.5162 7 7 3.3814 -0.7469 0.8198 8 6 2.9267 -1.6849 1.8493 9 1 1.8375 -1.7003 1.8852 10 6 3.4936 -1.2776 3.2207 11 6 4.3584 -2.4584 3.7084 12 6 4.7529 -3.2025 2.4086 13 1 5.5891 -2.7050 1.9172 14 6 5.0869 -4.6432 2.6984 15 1 4.5047 -5.4336 2.2481 16 6 6.1357 -4.9522 3.5383 17 7 6.8443 -3.9898 4.0870 18 14 6.5492 -6.7380 3.8980 19 1 6.8883 -7.4327 2.6302 20 1 7.7092 -6.8008 4.8231 21 1 5.3784 -7.4001 4.5274 22 6 3.4659 -3.0991 1.5509 23 1 3.0603 1.4414 -1.5869 24 1 5.5914 0.8565 -0.9400 25 1 5.5399 -0.9063 0.9947 26 1 4.1065 -0.3819 3.1203 27 1 2.6793 -1.0955 3.9221 28 1 5.2467 -2.0933 4.2236 29 1 3.7797 -3.1102 4.3630 30 1 7.5819 -4.2072 4.6782 31 1 2.7422 -3.8553 1.8554 32 1 3.7031 -3.2013 0.4919 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = 64.329626 kcal Electronic energy + Delta-G solvation = -15499.167288 eV Core-core repulsion = 13039.126059 eV Total energy + Delta-G solvation = -2460.041229 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.19626 -37.18668 -36.27472 -32.95049 -31.01017 -29.23692 -28.42708 -26.97154 -24.15241 -22.15511 -20.90289 -19.99185 -19.37430 -17.48394 -16.46762 -15.56543 -14.79453 -14.66151 -14.32275 -13.88961 -13.52439 -13.07119 -12.89274 -12.75184 -12.39616 -12.16513 -11.92356 -11.75802 -11.12699 -11.07808 -10.91817 -10.69427 -10.50327 -10.14514 -9.74469 -9.40522 -8.96004 -8.48532 -8.46539 -7.97804 -6.11908 -4.15552 1.64172 2.44775 3.00233 3.26084 3.29949 3.31438 3.33982 3.63535 4.10694 4.35705 4.92577 5.16383 5.29528 5.41906 5.47854 5.55562 5.62553 5.98375 6.19319 6.27386 6.28029 6.29849 6.42575 6.49318 6.70937 6.96536 7.01334 7.08672 7.31034 7.43003 7.55039 7.62384 7.71481 7.87987 8.29194 8.85724 9.49712 10.97151 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.006502 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.567128 B = 4305.188251 C = 4524.239750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.291 3.709 3 C 0.028 3.972 4 C -0.120 4.120 5 C -0.218 4.218 6 C 0.052 3.948 7 N -0.400 5.400 8 C 0.118 3.882 9 H 0.083 0.917 10 C -0.137 4.137 11 C -0.102 4.102 12 C 0.053 3.947 13 H 0.034 0.966 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.127 4.127 23 H 0.142 0.858 24 H 0.144 0.856 25 H 0.177 0.823 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 7.125 -4.959 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.023 4.023 3 C -0.085 4.085 4 C -0.150 4.150 5 C -0.241 4.241 6 C -0.085 4.085 7 N -0.073 5.073 8 C 0.017 3.983 9 H 0.101 0.899 10 C -0.175 4.175 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.165 4.165 23 H 0.160 0.840 24 H 0.161 0.839 25 H 0.194 0.806 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.503 6.890 -4.535 9.397 hybrid contribution 0.655 -0.991 0.312 1.228 sum -3.848 5.899 -4.223 8.212 Atomic orbital electron populations 1.81241 1.11448 1.09296 1.08809 1.24467 0.91102 0.93300 0.93447 1.15741 0.83052 1.06332 1.03404 1.21148 0.92288 1.01227 1.00296 1.20795 0.96925 1.04082 1.02321 1.22267 0.86503 1.00092 0.99664 1.44591 1.05500 1.30624 1.26581 1.22564 0.98787 0.90003 0.86959 0.89875 1.22730 1.00071 1.01164 0.93500 1.22374 0.97879 0.93600 1.00213 1.19647 0.90429 0.96030 0.90398 0.94783 1.21031 1.14844 0.91486 1.28306 0.92625 1.24945 0.95914 0.97114 0.95695 1.69919 1.19962 1.31548 1.31233 0.86683 0.77893 0.85353 0.78236 1.20239 1.21269 1.20306 1.22948 1.01097 0.91502 1.00904 0.83996 0.83864 0.80606 0.91508 0.92128 0.90583 0.92949 0.92862 0.90777 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.19 18.54 41.84 0.78 -6.41 16 2 C 0.29 4.51 14.95 -22.47 -0.34 4.17 16 3 C 0.03 0.41 6.75 -83.50 -0.56 -0.16 16 4 C -0.12 -1.54 10.85 -39.08 -0.42 -1.96 16 5 C -0.22 -2.78 10.81 -39.96 -0.43 -3.21 16 6 C 0.05 0.77 10.02 -16.84 -0.17 0.60 16 7 N -0.40 -6.21 2.57 -105.77 -0.27 -6.49 16 8 C 0.12 1.95 3.58 -66.81 -0.24 1.71 16 9 H 0.08 1.33 7.36 -51.94 -0.38 0.95 16 10 C -0.14 -2.31 6.38 -25.61 -0.16 -2.47 16 11 C -0.10 -2.13 5.56 -25.07 -0.14 -2.27 16 12 C 0.05 1.18 2.61 -89.71 -0.23 0.95 16 13 H 0.03 0.80 6.71 -51.93 -0.35 0.45 16 14 C -0.52 -13.23 8.54 -34.44 -0.29 -13.53 16 15 H 0.06 1.42 7.78 -52.48 -0.41 1.01 16 16 C 0.07 1.71 5.33 -17.82 -0.10 1.61 16 17 N -0.89 -23.85 12.02 55.43 0.67 -23.18 16 18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.13 -2.37 5.64 -25.00 -0.14 -2.51 16 23 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 24 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 25 H 0.18 2.64 6.66 -52.49 -0.35 2.29 16 26 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.74 7.37 -51.93 -0.38 1.35 16 29 H 0.05 1.14 8.04 -51.93 -0.42 0.73 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 32 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 275.05 15.07 4.14 4.14 Total: -1.00 -26.57 275.05 -6.85 -33.42 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.91 Total: 0.28 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.23 Total: -17.08 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.17 Total: -36.08 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.57 -6.85 -33.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.748 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds