Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37865 * 126.22145 * 132.32484 * 3 2 1 5 5 C 1.39954 * 107.10043 * 180.02562 * 4 3 2 6 6 C 1.35365 * 107.86015 * 0.02562 * 5 4 3 7 7 N 1.35758 * 108.84582 * 359.97438 * 6 5 4 8 8 C 1.46505 * 125.68093 * 180.02562 * 7 6 5 9 9 H 1.08988 * 110.01894 * 179.29787 * 8 7 6 10 10 C 1.53879 * 110.02857 * 57.90830 * 8 7 6 11 11 C 1.54270 * 106.60050 * 240.71704 * 10 8 7 12 12 C 1.54889 * 104.19382 * 23.61282 * 11 10 8 13 13 H 1.09000 * 110.75771 * 80.55393 * 12 11 10 14 14 C 1.50700 * 110.75650 * 203.74353 * 12 11 10 15 15 H 1.08004 * 120.00109 * 118.54260 * 14 12 11 16 16 C 1.37874 * 119.99931 * 298.54476 * 14 12 11 17 17 N 1.31511 * 119.99940 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99901 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47364 * 60.00113 * 18 16 14 20 20 H 1.48504 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47091 * 300.00008 * 18 16 14 22 22 C 1.54265 * 110.03263 * 300.69821 * 8 7 6 23 23 H 1.08007 * 126.44917 * 359.77202 * 4 3 2 24 24 H 1.08009 * 126.07017 * 179.97438 * 5 4 3 25 25 H 1.07995 * 125.57615 * 180.02562 * 6 5 4 26 26 H 1.09001 * 110.03109 * 0.02562 * 10 8 7 27 27 H 1.09001 * 110.03221 * 121.38495 * 10 8 7 28 28 H 1.08992 * 110.48587 * 142.28848 * 11 10 8 29 29 H 1.08998 * 110.48533 * 264.80217 * 11 10 8 30 30 H 0.97004 * 119.99863 * 179.97438 * 17 16 14 31 31 H 1.09004 * 110.48528 * 214.35388 * 22 8 7 32 32 H 1.09004 * 110.48449 * 336.98919 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3823 0.7499 -0.8223 5 6 4.7047 0.4414 -0.4838 6 6 4.6754 -0.4706 0.5162 7 7 3.3814 -0.7469 0.8198 8 6 2.9267 -1.6849 1.8493 9 1 1.8375 -1.7003 1.8852 10 6 3.4936 -1.2776 3.2207 11 6 4.3584 -2.4584 3.7084 12 6 4.7529 -3.2025 2.4086 13 1 5.5891 -2.7050 1.9172 14 6 5.0869 -4.6432 2.6984 15 1 4.5047 -5.4336 2.2481 16 6 6.1357 -4.9522 3.5383 17 7 6.8443 -3.9898 4.0870 18 14 6.5492 -6.7380 3.8980 19 1 6.8883 -7.4327 2.6302 20 1 7.7092 -6.8008 4.8231 21 1 5.3784 -7.4001 4.5274 22 6 3.4659 -3.0991 1.5509 23 1 3.0603 1.4414 -1.5869 24 1 5.5914 0.8565 -0.9400 25 1 5.5399 -0.9063 0.9947 26 1 4.1065 -0.3819 3.1203 27 1 2.6793 -1.0955 3.9221 28 1 5.2467 -2.0933 4.2236 29 1 3.7797 -3.1102 4.3630 30 1 7.5819 -4.2072 4.6782 31 1 2.7422 -3.8553 1.8554 32 1 3.7031 -3.2013 0.4919 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = 52.376574 kcal Electronic energy + Delta-G solvation = -15499.685611 eV Core-core repulsion = 13039.126059 eV Total energy + Delta-G solvation = -2460.559552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.35283 -38.69022 -37.50094 -34.76156 -32.43035 -30.35715 -30.04950 -28.47385 -25.95444 -23.31382 -22.14091 -21.42089 -20.88135 -18.75027 -18.36735 -16.83506 -16.56665 -15.97474 -15.66836 -15.30750 -14.94446 -14.38860 -14.18971 -14.03890 -13.92187 -13.53255 -13.16977 -12.98221 -12.95115 -12.73913 -12.43958 -12.42628 -12.08449 -11.71696 -11.47243 -11.12983 -10.81800 -10.44872 -9.60270 -9.09570 -8.11028 -6.19904 0.49962 1.25798 1.43465 1.44626 1.51261 1.92962 2.12005 2.44588 2.49733 2.92516 3.20384 3.58420 3.81584 4.02895 4.29274 4.46960 4.53912 4.60499 4.74149 4.79933 4.87493 4.95415 5.08081 5.28126 5.31693 5.34825 5.38982 5.65848 5.91446 5.95091 5.99259 6.17803 6.26910 6.37415 6.44613 6.88439 7.47701 8.96592 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.006502 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.567128 B = 4305.188251 C = 4524.239750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.305 3.695 3 C 0.011 3.989 4 C -0.103 4.103 5 C -0.205 4.205 6 C 0.035 3.965 7 N -0.411 5.411 8 C 0.129 3.871 9 H 0.093 0.907 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.047 3.953 13 H 0.018 0.982 14 C -0.536 4.536 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.913 5.913 18 Si 0.945 3.055 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.116 4.116 23 H 0.173 0.827 24 H 0.171 0.829 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.071 0.929 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 7.934 -5.949 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.009 4.009 3 C -0.101 4.101 4 C -0.132 4.132 5 C -0.229 4.229 6 C -0.102 4.102 7 N -0.085 5.085 8 C 0.027 3.973 9 H 0.112 0.888 10 C -0.162 4.162 11 C -0.132 4.132 12 C 0.029 3.971 13 H 0.036 0.964 14 C -0.574 4.574 15 H 0.068 0.932 16 C -0.179 4.179 17 N -0.552 5.552 18 Si 0.772 3.228 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.154 4.154 23 H 0.190 0.810 24 H 0.188 0.812 25 H 0.184 0.816 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.850 7.704 -5.539 10.656 hybrid contribution 0.817 -1.223 0.573 1.578 sum -4.033 6.481 -4.966 9.107 Atomic orbital electron populations 1.81258 1.12179 1.10310 1.09781 1.24527 0.91122 0.92529 0.92687 1.15920 0.82744 1.07219 1.04182 1.21567 0.91740 1.00289 0.99647 1.21138 0.98013 1.02700 1.01023 1.22362 0.86052 1.01069 1.00669 1.44487 1.05885 1.31144 1.26983 1.22273 0.99080 0.88889 0.87013 0.88849 1.22574 1.00001 0.99450 0.94147 1.22127 0.97308 0.94715 0.99084 1.19591 0.91520 0.94339 0.91638 0.96428 1.21434 1.14765 0.93166 1.28031 0.93161 1.25612 0.96066 1.00455 0.95803 1.70029 1.20337 1.33006 1.31803 0.85810 0.77602 0.81381 0.78039 1.19870 1.21107 1.19993 1.22754 0.99321 0.93269 1.00097 0.80999 0.81174 0.81644 0.90842 0.90237 0.93136 0.94548 0.93036 0.91056 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.56 18.54 19.00 0.35 -14.21 16 2 C 0.30 8.82 14.95 88.33 1.32 10.14 16 3 C 0.01 0.30 6.75 39.40 0.27 0.57 16 4 C -0.10 -2.27 10.85 22.60 0.25 -2.03 16 5 C -0.21 -4.60 10.81 22.02 0.24 -4.36 16 6 C 0.04 0.97 10.02 83.42 0.84 1.81 16 7 N -0.41 -12.05 2.57 -488.54 -1.26 -13.31 16 8 C 0.13 4.11 3.58 45.72 0.16 4.28 16 9 H 0.09 2.81 7.36 -2.39 -0.02 2.79 16 10 C -0.12 -4.06 6.38 31.32 0.20 -3.86 16 11 C -0.09 -3.97 5.56 31.67 0.18 -3.80 16 12 C 0.05 2.14 2.61 -10.20 -0.03 2.11 16 13 H 0.02 0.85 6.71 -2.39 -0.02 0.83 16 14 C -0.54 -27.74 8.54 25.60 0.22 -27.52 16 15 H 0.05 2.58 7.78 -2.91 -0.02 2.56 16 16 C 0.02 1.07 5.33 84.65 0.45 1.52 16 17 N -0.91 -49.88 12.02 21.45 0.26 -49.63 16 18 Si 0.95 41.94 29.54 68.60 2.03 43.96 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C -0.12 -4.33 5.64 31.71 0.18 -4.15 16 23 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 24 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.17 4.93 6.66 -2.91 -0.02 4.92 16 26 H 0.07 2.33 7.44 -2.39 -0.02 2.31 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 2.37 7.37 -2.39 -0.02 2.35 16 29 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.07 2.67 8.04 -2.38 -0.02 2.65 16 32 H 0.06 2.21 8.04 -2.38 -0.02 2.20 16 Total: -1.00 -56.50 275.05 6.76 -49.73 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.12 Total: 8.75 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.27 Total: -25.30 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -0.65 Total: -77.15 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -56.50 6.76 -49.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.110 kcal (2) G-P(sol) polarization free energy of solvation -56.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds