Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36501 * 120.18055 * 2 1 4 4 C 1.38919 * 120.62825 * 180.02562 * 3 2 1 5 5 C 1.36635 * 120.81227 * 0.02562 * 4 3 2 6 6 C 1.39240 * 119.85453 * 0.02562 * 5 4 3 7 7 N 1.37047 * 133.86016 * 179.97438 * 6 5 4 8 8 H 0.96995 * 125.45797 * 359.97438 * 7 6 5 9 9 N 1.39869 * 109.08042 * 180.02562 * 7 6 5 10 10 C 1.30246 * 110.09191 * 0.02562 * 9 7 6 11 11 C 1.50704 * 126.10532 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47077 * 186.25056 * 11 10 9 13 13 C 1.53002 * 109.47060 * 306.25562 * 11 10 9 14 14 C 1.50705 * 109.46891 * 66.25539 * 11 10 9 15 15 H 1.07995 * 120.00202 * 333.84476 * 14 11 10 16 16 C 1.37875 * 119.99989 * 153.85089 * 14 11 10 17 17 N 1.31519 * 119.99956 * 356.86467 * 16 14 11 18 18 Si 1.86800 * 120.00270 * 176.85945 * 16 14 11 19 19 H 1.48499 * 109.46855 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47451 * 240.00004 * 18 16 14 21 21 H 1.48498 * 109.47170 * 119.99767 * 18 16 14 22 22 C 1.39906 * 120.18192 * 180.31052 * 2 1 3 23 23 H 1.09001 * 109.47502 * 96.95702 * 1 2 3 24 24 H 1.08998 * 109.47246 * 216.96349 * 1 2 3 25 25 H 1.09005 * 109.47196 * 336.96007 * 1 2 3 26 26 H 1.08000 * 119.68784 * 359.97438 * 3 2 1 27 27 H 1.08001 * 119.59693 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.06933 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46895 * 55.80899 * 13 11 10 30 30 H 1.08997 * 109.46511 * 175.81084 * 13 11 10 31 31 H 1.09001 * 109.46882 * 295.81102 * 13 11 10 32 32 H 0.96999 * 119.99738 * 5.57460 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1800 0.0000 4 6 3.5824 1.1908 -0.0005 5 6 4.2914 0.0228 -0.0016 6 6 3.6188 -1.1963 -0.0027 7 7 4.0253 -2.5051 -0.0043 8 1 4.9467 -2.8081 -0.0054 9 7 2.8985 -3.3338 -0.0054 10 6 1.8134 -2.6136 -0.0051 11 6 0.4001 -3.1369 -0.0054 12 1 -0.2953 -2.3051 -0.1169 13 6 0.2182 -4.1135 -1.1692 14 6 0.1277 -3.8486 1.2948 15 1 0.9425 -4.2883 1.8508 16 6 -1.1617 -3.9384 1.7745 17 7 -2.1457 -3.3504 1.1297 18 14 -1.5113 -4.8954 3.3402 19 1 -0.2431 -5.4572 3.8705 20 1 -2.4574 -6.0009 3.0439 21 1 -2.1112 -3.9882 4.3514 22 6 2.2104 -1.2094 -0.0066 23 1 -0.3634 -0.1245 -1.0201 24 1 -0.3633 -0.8211 0.6179 25 1 -0.3634 0.9457 0.4022 26 1 1.6511 2.1140 -0.0004 27 1 4.1084 2.1341 -0.0001 28 1 5.3712 0.0453 -0.0016 29 1 0.9631 -4.9060 -1.0982 30 1 -0.7803 -4.5483 -1.1257 31 1 0.3422 -3.5816 -2.1125 32 1 -1.9784 -2.9226 0.2754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = 45.672764 kcal Electronic energy + Delta-G solvation = -15779.987724 eV Core-core repulsion = 13319.137473 eV Total energy + Delta-G solvation = -2460.850251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.18906 -38.29821 -36.88825 -34.18531 -32.64431 -30.80401 -30.34915 -27.63580 -26.86793 -24.57057 -23.02430 -22.75683 -20.71122 -18.64418 -18.26634 -17.52131 -16.22733 -15.91630 -15.73446 -15.60361 -15.26360 -14.58696 -14.25479 -14.15690 -13.55706 -13.27720 -13.19565 -12.80079 -12.56932 -12.54865 -12.37091 -11.97887 -11.91805 -11.64067 -11.47563 -10.98394 -10.51093 -10.35237 -9.53507 -8.78233 -8.54854 -6.29068 0.07004 0.62766 1.52538 1.59149 1.66765 1.78805 1.92462 2.56609 2.87591 3.21408 3.68119 3.73334 3.94769 4.10449 4.37171 4.46084 4.51579 4.57797 4.72267 4.76140 4.88245 4.89133 4.94478 5.11512 5.19698 5.35846 5.47744 5.52533 5.63735 5.77720 6.03929 6.06444 6.21941 6.55586 6.66136 6.84176 7.44623 8.81065 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.008648 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.920077 B = 3237.005300 C = 3548.129585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.019 4.019 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.157 4.157 6 C 0.116 3.884 7 N -0.518 5.518 8 H 0.446 0.554 9 N -0.297 5.297 10 C 0.132 3.868 11 C 0.079 3.921 12 H 0.062 0.938 13 C -0.121 4.121 14 C -0.592 4.592 15 H 0.029 0.971 16 C -0.018 4.018 17 N -0.926 5.926 18 Si 1.112 2.888 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.215 4.215 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.028 9.866 -2.752 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 C -0.189 4.189 4 C -0.078 4.078 5 C -0.179 4.179 6 C 0.000 4.000 7 N -0.233 5.233 8 H 0.292 0.708 9 N -0.111 5.111 10 C -0.045 4.045 11 C 0.059 3.941 12 H 0.080 0.920 13 C -0.179 4.179 14 C -0.631 4.631 15 H 0.048 0.952 16 C -0.217 4.217 17 N -0.563 5.563 18 Si 0.935 3.065 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.223 4.223 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.170 0.830 27 H 0.188 0.812 28 H 0.172 0.828 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.346 8.249 -1.701 12.581 hybrid contribution 1.354 0.439 -1.114 1.808 sum 10.701 8.687 -2.815 14.068 Atomic orbital electron populations 1.20962 0.91097 1.03283 1.02497 1.19467 0.96233 0.91343 0.95101 1.20901 0.95087 0.97000 1.05910 1.21144 0.93557 0.98465 0.94671 1.20182 1.00952 0.88135 1.08636 1.19309 0.93655 0.87660 0.99403 1.45911 1.07818 1.01439 1.68116 0.70802 1.76477 0.93221 1.18739 1.22670 1.24194 0.95883 0.90197 0.94211 1.17835 0.85331 0.95760 0.95182 0.91981 1.21755 1.00132 0.99230 0.96823 1.22022 0.95174 1.38364 1.07500 0.95223 1.26981 0.92225 0.96601 1.05902 1.70846 1.34606 1.34464 1.16424 0.82971 0.75574 0.75614 0.72315 1.21155 1.20049 1.20149 1.20167 0.93654 0.93754 1.14752 0.90736 0.93069 0.89121 0.82964 0.81189 0.82771 0.94304 0.94108 0.94357 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.92 71.24 0.64 -3.71 16 2 C -0.02 -0.68 5.88 -19.87 -0.12 -0.80 16 3 C -0.17 -4.54 9.59 22.03 0.21 -4.33 16 4 C -0.06 -1.30 9.96 22.06 0.22 -1.08 16 5 C -0.16 -4.05 10.03 22.14 0.22 -3.83 16 6 C 0.12 4.15 7.34 39.21 0.29 4.44 16 7 N -0.52 -18.95 7.37 -51.54 -0.38 -19.33 16 8 H 0.45 12.41 8.96 -213.48 -1.91 10.50 16 9 N -0.30 -13.84 12.46 -43.69 -0.54 -14.38 16 10 C 0.13 6.43 5.95 44.79 0.27 6.70 16 11 C 0.08 4.12 2.19 -12.28 -0.03 4.10 16 12 H 0.06 3.25 3.36 -2.39 -0.01 3.25 16 13 C -0.12 -5.86 9.14 71.98 0.66 -5.20 16 14 C -0.59 -34.18 8.30 25.60 0.21 -33.96 16 15 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 16 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 17 N -0.93 -54.14 13.61 21.45 0.29 -53.85 16 18 Si 1.11 51.28 29.90 68.60 2.05 53.33 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 C -0.22 -9.07 6.15 -20.25 -0.12 -9.19 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.05 2.27 5.94 -2.39 -0.01 2.26 16 25 H 0.09 2.60 8.02 -2.38 -0.02 2.58 16 26 H 0.15 3.05 8.04 -2.91 -0.02 3.03 16 27 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.26 15.30 6.67 -92.71 -0.62 14.68 16 Total: -1.00 -69.34 270.99 3.70 -65.64 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.62 Total: 16.01 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 2.91 Total: -47.41 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -0.63 Total: -87.56 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -69.34 3.70 -65.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.312 kcal (2) G-P(sol) polarization free energy of solvation -69.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds