Wall clock time and date at job start Mon Mar 30 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38964 * 119.59243 * 2 1 4 4 C 1.36469 * 120.63063 * 180.02562 * 3 2 1 5 5 C 1.39943 * 119.63200 * 0.22939 * 4 3 2 6 6 C 1.40817 * 119.65225 * 359.47191 * 5 4 3 7 7 C 1.36589 * 119.59140 * 179.97438 * 2 1 3 8 8 N 1.37040 * 106.73143 * 180.35852 * 6 5 4 9 9 H 0.97001 * 125.45446 * 180.26828 * 8 6 5 10 10 N 1.39871 * 109.08085 * 0.25254 * 8 6 5 11 11 C 1.30250 * 110.08386 * 359.97438 * 10 8 6 12 12 C 1.50701 * 126.10640 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46664 * 89.97619 * 12 11 10 14 14 C 1.50701 * 109.46664 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00074 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00122 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99673 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00187 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47055 * 59.99661 * 18 16 14 20 20 H 1.48502 * 109.46678 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46776 * 299.99748 * 18 16 14 22 22 H 1.08993 * 109.46798 * 90.00895 * 1 2 3 23 23 H 1.08995 * 109.46785 * 210.00535 * 1 2 3 24 24 H 1.09000 * 109.47056 * 330.00566 * 1 2 3 25 25 H 1.08002 * 119.68492 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.18015 * 179.97438 * 4 3 2 27 27 H 1.07994 * 120.07775 * 0.03219 * 7 2 1 28 28 H 1.08999 * 109.47126 * 209.97777 * 12 11 10 29 29 H 1.08997 * 109.46786 * 329.97907 * 12 11 10 30 30 H 1.08999 * 109.47478 * 299.99943 * 13 12 11 31 31 H 1.08997 * 109.47283 * 60.00593 * 13 12 11 32 32 H 0.96999 * 119.99540 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.2084 0.0000 4 6 3.5577 1.2331 -0.0005 5 6 4.2716 0.0294 -0.0059 6 6 3.5744 -1.1940 0.0005 7 6 2.1815 -1.1877 0.0005 8 7 4.5194 -2.1865 0.0013 9 1 4.3351 -3.1389 0.0015 10 7 5.7920 -1.6062 0.0012 11 6 5.6914 -0.3076 0.0000 12 6 6.8368 0.6718 0.0001 13 6 7.2259 1.0014 -1.4424 14 6 8.3709 1.9813 -1.4423 15 1 8.7797 2.3340 -0.5070 16 6 8.8958 2.4284 -2.6363 17 7 8.3976 1.9993 -3.7753 18 14 10.3155 3.6425 -2.6362 19 1 11.4791 3.0433 -1.9347 20 1 10.6931 3.9625 -4.0363 21 1 9.9030 4.8863 -1.9375 22 1 -0.3633 -0.0002 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6415 2.1368 -0.0004 26 1 4.0837 2.1764 -0.0009 27 1 1.6362 -2.1199 0.0004 28 1 6.5339 1.5849 0.5125 29 1 7.6907 0.2321 0.5154 30 1 7.5288 0.0883 -1.9548 31 1 6.3720 1.4411 -1.9577 32 1 8.7666 2.3141 -4.6153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:34 Heat of formation + Delta-G solvation = 39.758381 kcal Electronic energy + Delta-G solvation = -14964.110114 eV Core-core repulsion = 12503.003395 eV Total energy + Delta-G solvation = -2461.106718 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.21871 -38.54087 -36.11353 -34.25528 -32.89859 -31.79443 -30.19992 -27.60265 -27.25914 -23.72622 -23.59119 -22.22949 -20.55373 -18.73219 -18.42195 -17.62967 -16.53577 -16.06732 -15.84459 -15.33151 -14.89995 -14.70907 -14.42477 -14.22062 -14.01215 -13.20648 -12.97851 -12.82442 -12.67928 -12.55619 -12.27501 -12.09208 -11.93684 -11.81102 -11.50561 -11.25970 -10.83972 -10.54100 -9.42447 -8.89584 -8.17837 -6.30485 0.00256 0.58563 1.42984 1.47432 1.48050 1.55529 1.81290 2.44107 2.83241 3.15619 3.58235 3.65985 3.79480 4.02833 4.34739 4.42700 4.56803 4.64528 4.75470 4.81118 4.87422 4.94037 5.00574 5.11074 5.30034 5.43484 5.49293 5.57434 5.63658 5.68296 5.82007 6.00882 6.20604 6.46113 6.68499 6.85386 7.39120 8.94244 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037832 B = 0.005609 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.926858 B = 4990.892962 C = 5397.788715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.036 4.036 3 C -0.161 4.161 4 C -0.049 4.049 5 C -0.209 4.209 6 C 0.120 3.880 7 C -0.154 4.154 8 N -0.511 5.511 9 H 0.449 0.551 10 N -0.290 5.290 11 C 0.106 3.894 12 C -0.026 4.026 13 C 0.043 3.957 14 C -0.542 4.542 15 H 0.070 0.930 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.262 1.262 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.129 0.871 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.072 0.928 30 H -0.019 1.019 31 H -0.007 1.007 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 -3.626 8.861 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.180 4.180 4 C -0.069 4.069 5 C -0.217 4.217 6 C 0.003 3.997 7 C -0.176 4.176 8 N -0.227 5.227 9 H 0.295 0.705 10 N -0.105 5.105 11 C -0.072 4.072 12 C -0.066 4.066 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.186 1.186 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.170 0.830 26 H 0.147 0.853 27 H 0.170 0.830 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.000 1.000 31 H 0.012 0.988 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.294 -4.660 8.696 18.200 hybrid contribution 0.497 0.393 -0.531 0.826 sum -14.797 -4.268 8.166 17.431 Atomic orbital electron populations 1.20892 0.87811 1.04368 1.03569 1.19921 0.98000 0.91597 0.94382 1.20903 0.92884 0.99220 1.05036 1.20641 0.94861 0.96040 0.95385 1.20131 0.91944 0.95396 1.14252 1.19206 0.92651 0.88508 0.99294 1.19979 0.88206 1.00299 1.09106 1.45834 1.00733 1.08385 1.67731 0.70480 1.76478 1.02526 1.09854 1.21630 1.24032 0.94792 0.91737 0.96605 1.20109 0.92198 0.94899 0.99360 1.18817 0.95202 0.94717 0.90747 1.21617 1.17135 1.26019 0.93178 0.91163 1.26027 1.00091 0.98636 0.95041 1.70129 1.43681 1.45712 0.98096 0.85429 0.78897 0.79151 0.77130 1.19176 1.21086 1.18610 0.89881 0.89985 0.89791 0.82994 0.85279 0.83012 0.89129 0.90938 1.00015 0.98827 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.99 71.24 0.71 -0.69 16 2 C -0.04 -0.78 5.85 -20.07 -0.12 -0.90 16 3 C -0.16 -3.96 9.60 22.03 0.21 -3.75 16 4 C -0.05 -1.56 10.07 22.27 0.22 -1.34 16 5 C -0.21 -7.84 6.33 -20.24 -0.13 -7.97 16 6 C 0.12 3.86 7.34 39.21 0.29 4.15 16 7 C -0.15 -3.72 9.64 22.14 0.21 -3.51 16 8 N -0.51 -16.72 7.37 -51.53 -0.38 -17.10 16 9 H 0.45 10.94 8.96 -213.47 -1.91 9.02 16 10 N -0.29 -12.00 12.55 -43.69 -0.55 -12.55 16 11 C 0.11 4.48 6.69 44.79 0.30 4.78 16 12 C -0.03 -1.18 5.75 29.85 0.17 -1.01 16 13 C 0.04 2.41 4.96 29.85 0.15 2.56 16 14 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 15 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 17 N -0.94 -58.38 13.29 21.45 0.28 -58.10 16 18 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 24 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 25 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 26 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 30 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -72.04 280.88 3.31 -68.73 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.79 Total: 10.69 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 2.72 Total: -38.14 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -0.64 Total: -87.74 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.04 3.31 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.491 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds