Wall clock time and date at job start Mon Mar 30 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36501 * 120.18209 * 2 1 4 4 C 1.38921 * 120.62569 * 180.27067 * 3 2 1 5 5 C 1.36624 * 120.81409 * 359.48492 * 4 3 2 6 6 C 1.39243 * 119.85580 * 0.50825 * 5 4 3 7 7 C 1.39901 * 120.17871 * 180.02562 * 2 1 3 8 8 C 1.45930 * 134.03793 * 359.97438 * 7 2 1 9 9 C 1.50695 * 126.10639 * 0.02562 * 8 7 2 10 10 C 1.50701 * 109.47264 * 83.84043 * 9 8 7 11 11 H 1.08001 * 120.00190 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00158 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00222 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00188 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46917 * 59.99645 * 14 12 10 16 16 H 1.48492 * 109.47197 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46758 * 299.99989 * 14 12 10 18 18 N 1.30244 * 107.78565 * 179.97438 * 8 7 2 19 19 N 1.37040 * 133.86027 * 179.74870 * 6 5 4 20 20 C 1.46503 * 125.46086 * 359.97438 * 19 6 5 21 21 H 1.09001 * 109.46749 * 96.08472 * 1 2 3 22 22 H 1.08989 * 109.47537 * 216.08744 * 1 2 3 23 23 H 1.08999 * 109.46938 * 336.09065 * 1 2 3 24 24 H 1.08002 * 119.68767 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.58727 * 179.74004 * 4 3 2 26 26 H 1.08004 * 120.07297 * 180.28222 * 5 4 3 27 27 H 1.09005 * 109.46839 * 203.83520 * 9 8 7 28 28 H 1.08995 * 109.47376 * 323.83471 * 9 8 7 29 29 H 0.96997 * 120.00637 * 179.97438 * 13 12 10 30 30 H 1.08995 * 109.47711 * 270.00635 * 20 19 6 31 31 H 1.09009 * 109.46846 * 30.00456 * 20 19 6 32 32 H 1.08996 * 109.47360 * 150.00036 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1933 1.1800 0.0000 4 6 3.5825 1.1907 -0.0056 5 6 4.2914 0.0228 -0.0008 6 6 3.6188 -1.1964 -0.0007 7 6 2.2103 -1.2094 -0.0005 8 6 1.8134 -2.6137 -0.0007 9 6 0.4003 -3.1371 -0.0008 10 6 -0.1237 -3.1684 -1.4134 11 1 0.5037 -2.8416 -2.2295 12 6 -1.4044 -3.6134 -1.6640 13 7 -2.1687 -4.0109 -0.6703 14 14 -2.0542 -3.6516 -3.4150 15 1 -1.1977 -4.5396 -4.2415 16 1 -3.4467 -4.1674 -3.4151 17 1 -2.0344 -2.2786 -3.9803 18 7 2.8986 -3.3338 -0.0018 19 7 4.0253 -2.5051 -0.0010 20 6 5.4170 -2.9628 -0.0019 21 1 -0.3633 -0.1089 -1.0219 22 1 -0.3634 -0.8304 0.6052 23 1 -0.3633 0.9395 0.4165 24 1 1.6512 2.1141 -0.0004 25 1 4.1084 2.1340 -0.0098 26 1 5.3712 0.0452 -0.0006 27 1 0.3861 -4.1448 0.4144 28 1 -0.2286 -2.4854 0.6056 29 1 -3.0698 -4.3235 -0.8464 30 1 5.7615 -3.0763 -1.0297 31 1 6.0406 -2.2308 0.5116 32 1 5.4845 -3.9217 0.5118 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:59 Heat of formation + Delta-G solvation = 56.638609 kcal Electronic energy + Delta-G solvation = -15588.953657 eV Core-core repulsion = 13128.578920 eV Total energy + Delta-G solvation = -2460.374737 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12858 -38.25473 -36.02251 -34.40901 -32.75764 -30.85557 -30.61487 -27.55739 -27.00519 -25.04069 -23.15060 -22.40491 -20.06354 -18.55138 -17.78200 -17.42893 -16.50080 -16.35789 -16.08225 -15.18180 -14.67481 -14.56148 -14.30934 -13.96505 -13.68951 -13.43625 -13.37911 -13.01391 -12.77598 -12.67587 -12.31270 -12.24157 -11.90428 -11.79037 -11.53507 -11.33119 -10.56369 -10.49070 -9.47314 -8.58942 -8.18257 -6.31303 0.12771 0.68009 1.39469 1.42462 1.49937 1.66324 1.67965 2.42192 2.93369 3.11674 3.63400 3.73873 3.93777 4.15654 4.39527 4.43953 4.47624 4.53365 4.56929 4.63677 4.88613 4.94169 5.01464 5.06017 5.24104 5.39683 5.51199 5.58949 5.66129 5.72459 5.85522 6.07709 6.15745 6.33153 6.74391 6.88083 7.35154 8.90038 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.008594 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.524774 B = 3257.493987 C = 3829.436120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.013 4.013 3 C -0.174 4.174 4 C -0.058 4.058 5 C -0.158 4.158 6 C 0.112 3.888 7 C -0.209 4.209 8 C 0.121 3.879 9 C 0.099 3.901 10 C -0.517 4.517 11 H 0.042 0.958 12 C 0.017 3.983 13 N -0.922 5.922 14 Si 0.960 3.040 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.265 1.265 18 N -0.313 5.313 19 N -0.427 5.427 20 C 0.107 3.893 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.152 0.848 25 H 0.170 0.830 26 H 0.153 0.847 27 H 0.003 0.997 28 H 0.041 0.959 29 H 0.268 0.732 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 11.184 1.283 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.015 4.015 3 C -0.194 4.194 4 C -0.078 4.078 5 C -0.180 4.180 6 C -0.004 4.004 7 C -0.217 4.217 8 C -0.056 4.056 9 C 0.061 3.939 10 C -0.556 4.556 11 H 0.061 0.939 12 C -0.183 4.183 13 N -0.562 5.562 14 Si 0.784 3.216 15 H -0.202 1.202 16 H -0.200 1.200 17 H -0.189 1.189 18 N -0.126 5.126 19 N -0.215 5.215 20 C -0.033 4.033 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.109 0.891 24 H 0.170 0.830 25 H 0.188 0.812 26 H 0.171 0.829 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.794 9.822 1.339 16.185 hybrid contribution -0.854 -0.097 -0.759 1.147 sum 11.940 9.725 0.580 15.410 Atomic orbital electron populations 1.20868 0.90832 1.02804 1.02502 1.19502 0.96392 0.91230 0.94420 1.20884 0.95064 0.96967 1.06438 1.21122 0.93563 0.98368 0.94725 1.20124 1.00797 0.88064 1.09034 1.19345 0.93578 0.87520 0.99937 1.20072 0.93421 0.93601 1.14624 1.24285 0.95752 0.90911 0.94622 1.17673 0.83654 0.94992 0.97628 1.20938 0.98707 1.43986 0.91995 0.93933 1.25730 0.96692 0.94444 1.01400 1.70035 1.09322 1.43776 1.33022 0.85579 0.77432 0.78970 0.79570 1.20195 1.20034 1.18931 1.76508 0.93196 1.19592 1.23304 1.48485 1.06033 1.01412 1.65615 1.21963 0.75023 1.02624 1.03650 0.91853 0.92740 0.89134 0.83041 0.81238 0.82893 0.97887 0.94082 0.92310 0.90794 0.86994 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 9.53 71.24 0.68 -3.57 16 2 C -0.01 -0.49 5.88 -19.87 -0.12 -0.60 16 3 C -0.17 -4.85 9.59 22.03 0.21 -4.64 16 4 C -0.06 -1.34 9.96 22.06 0.22 -1.12 16 5 C -0.16 -4.25 9.97 22.13 0.22 -4.03 16 6 C 0.11 4.16 6.87 39.21 0.27 4.43 16 7 C -0.21 -9.17 6.15 -20.24 -0.12 -9.29 16 8 C 0.12 6.13 6.62 44.79 0.30 6.43 16 9 C 0.10 5.57 4.94 29.10 0.14 5.72 16 10 C -0.52 -30.24 9.09 25.60 0.23 -30.01 16 11 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 12 C 0.02 0.95 5.46 84.65 0.46 1.41 16 13 N -0.92 -54.85 13.29 21.45 0.28 -54.57 16 14 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 18 N -0.31 -15.22 12.40 -43.70 -0.54 -15.76 16 19 N -0.43 -16.43 4.05 -361.04 -1.46 -17.89 16 20 C 0.11 2.67 11.40 127.77 1.46 4.12 16 21 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 22 H 0.05 2.35 5.39 -2.39 -0.01 2.34 16 23 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 24 H 0.15 3.19 8.05 -2.91 -0.02 3.16 16 25 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 26 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 28 H 0.04 2.33 5.60 -2.39 -0.01 2.32 16 29 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -72.27 275.99 5.37 -66.90 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.11 Total: 5.80 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.95 Total: -31.15 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.72 Total: -88.22 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.27 5.37 -66.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.541 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds