Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35860 * 117.00187 * 2 1 4 4 C 1.38885 * 120.00642 * 359.97137 * 3 2 1 5 5 C 1.37780 * 120.30879 * 180.02562 * 4 3 2 6 6 C 1.39785 * 119.97775 * 359.69763 * 5 4 3 7 7 C 1.39669 * 119.27070 * 0.60078 * 6 5 4 8 8 C 1.37440 * 120.54190 * 359.39495 * 7 6 5 9 9 C 1.50937 * 106.30649 * 179.63050 * 7 6 5 10 10 C 1.51091 * 105.45770 * 359.72485 * 9 7 6 11 11 C 1.32177 * 108.26968 * 359.97438 * 10 9 7 12 12 C 1.50706 * 124.45666 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46817 * 95.02993 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00302 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46901 * 89.99815 * 17 15 13 19 19 H 1.48495 * 109.47068 * 210.00475 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00281 * 17 15 13 21 21 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47419 * 300.00940 * 1 2 3 23 23 H 1.08999 * 109.46271 * 60.00603 * 1 2 3 24 24 H 1.08000 * 119.84200 * 0.04631 * 4 3 2 25 25 H 1.08003 * 120.00915 * 180.02562 * 5 4 3 26 26 H 1.08007 * 120.04782 * 180.28485 * 8 7 6 27 27 H 1.09004 * 110.25183 * 240.73151 * 9 7 6 28 28 H 1.08999 * 110.25533 * 118.71698 * 9 7 6 29 29 H 1.08000 * 125.86664 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47318 * 215.02372 * 12 11 10 31 31 H 1.09000 * 109.47161 * 335.03003 * 12 11 10 32 32 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2896 2.3754 -0.0006 5 6 1.9087 3.6063 -0.0011 6 6 3.3042 3.6862 0.0053 7 6 4.0557 2.5090 -0.0005 8 6 3.4338 1.2834 0.0000 9 6 5.5048 2.9312 -0.0006 10 6 5.4841 4.4420 -0.0013 11 6 4.2234 4.8390 -0.0021 12 6 3.7834 6.2805 -0.0024 13 6 3.5186 6.7244 -1.4180 14 1 3.6556 6.0322 -2.2356 15 6 3.1024 8.0146 -1.6695 16 7 2.8708 8.4019 -2.9047 17 14 2.8661 9.2121 -0.2553 18 1 4.1376 9.9360 -0.0021 19 1 1.8023 10.1873 -0.6051 20 1 2.4705 8.4646 0.9654 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3632 0.5138 -0.8901 24 1 0.2112 2.3161 -0.0003 25 1 1.3159 4.5091 -0.0012 26 1 4.0227 0.3780 0.0001 27 1 6.0058 2.5604 -0.8949 28 1 6.0057 2.5613 0.8941 29 1 6.3505 5.0867 -0.0019 30 1 2.8720 6.3823 0.5867 31 1 4.5680 6.9000 0.4319 32 1 2.5783 9.3097 -3.0816 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260988630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = 3.374238 kcal Electronic energy + Delta-G solvation = -15146.126012 eV Core-core repulsion = 12651.148808 eV Total energy + Delta-G solvation = -2494.977204 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22521 -38.54292 -34.89778 -33.01564 -31.40015 -29.64994 -27.92290 -27.26009 -25.52718 -22.37696 -21.86587 -20.59497 -18.32144 -17.19497 -16.73619 -16.02354 -15.65671 -14.98990 -14.35997 -14.09487 -13.82819 -13.33006 -13.06146 -12.57877 -12.32437 -12.12997 -12.04828 -11.64176 -11.53336 -11.11992 -10.84902 -10.49406 -10.26747 -10.15893 -9.93324 -9.39029 -8.70084 -8.56591 -8.45046 -7.21122 -6.05602 -4.04037 1.44981 1.69264 3.12015 3.28932 3.33214 3.36700 3.39733 4.31994 4.42591 4.88148 5.02657 5.13433 5.16814 5.19132 5.29907 5.40221 5.42359 5.63941 5.69183 5.90106 5.98494 6.05722 6.34455 6.36256 6.60066 6.71539 6.84925 7.00416 7.02342 7.09345 7.43004 7.59623 7.65253 7.77784 8.53241 9.00741 9.55022 11.07529 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.006825 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.026338 B = 4101.299950 C = 4641.854514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.211 4.211 5 C -0.049 4.049 6 C -0.083 4.083 7 C -0.072 4.072 8 C -0.138 4.138 9 C -0.053 4.053 10 C -0.202 4.202 11 C -0.035 4.035 12 C 0.023 3.977 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 -13.591 7.591 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.229 4.229 5 C -0.067 4.067 6 C -0.083 4.083 7 C -0.072 4.072 8 C -0.157 4.157 9 C -0.089 4.089 10 C -0.220 4.220 11 C -0.035 4.035 12 C -0.014 4.014 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 H 0.114 0.886 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.615 -13.636 7.478 15.636 hybrid contribution -0.540 0.938 0.466 1.178 sum -2.155 -12.698 7.944 15.133 Atomic orbital electron populations 1.22999 0.78772 1.03404 1.01448 1.85991 1.21069 1.27238 1.89220 1.18832 0.91940 0.83841 0.98260 1.21016 0.99627 0.92071 1.10229 1.20801 0.93652 0.97052 0.95180 1.19796 0.93055 0.93649 1.01816 1.20307 0.96687 0.92385 0.97819 1.19279 0.90918 0.96960 1.08554 1.19843 0.92114 0.94869 1.02093 1.23241 0.97318 0.94259 1.07154 1.20846 0.92287 0.94919 0.95405 1.18541 0.96440 0.87969 0.98449 1.20927 1.45297 0.97489 0.91008 0.90894 1.24995 0.94856 0.98003 0.95427 1.69904 1.46737 1.18421 1.18928 0.86828 0.78253 0.81229 0.83352 1.20152 1.21292 1.18955 0.88629 0.92793 0.92663 0.85691 0.85230 0.85735 0.88999 0.89222 0.84377 0.95664 0.95767 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.50 10.49 -19.30 -0.20 -4.70 16 3 C 0.12 1.84 6.70 -39.07 -0.26 1.58 16 4 C -0.21 -3.39 9.01 -39.51 -0.36 -3.74 16 5 C -0.05 -0.92 10.07 -39.17 -0.39 -1.31 16 6 C -0.08 -1.67 6.17 -105.04 -0.65 -2.32 16 7 C -0.07 -1.26 6.37 -104.26 -0.66 -1.93 16 8 C -0.14 -2.22 9.97 -39.60 -0.39 -2.62 16 9 C -0.05 -0.83 6.76 -28.73 -0.19 -1.03 16 10 C -0.20 -3.75 10.91 -36.04 -0.39 -4.15 16 11 C -0.03 -0.75 5.33 -102.80 -0.55 -1.29 16 12 C 0.02 0.56 4.45 -29.03 -0.13 0.43 16 13 C -0.51 -14.60 9.65 -34.44 -0.33 -14.93 16 14 H 0.07 2.31 7.98 -52.48 -0.42 1.89 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 17 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 21 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 24 H 0.13 1.65 6.28 -52.49 -0.33 1.32 16 25 H 0.13 2.44 8.06 -52.48 -0.42 2.02 16 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.14 2.36 8.06 -52.49 -0.42 1.93 16 30 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 31 H 0.02 0.57 7.55 -51.93 -0.39 0.18 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -31.94 274.57 -7.40 -39.33 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.01 Total: -0.44 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -3.42 Total: -28.14 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.20 Total: -4.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.94 -7.40 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.707 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds