Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35860 * 117.00187 * 2 1 4 4 C 1.38885 * 120.00642 * 359.97137 * 3 2 1 5 5 C 1.37780 * 120.30879 * 180.02562 * 4 3 2 6 6 C 1.39785 * 119.97775 * 359.69763 * 5 4 3 7 7 C 1.39669 * 119.27070 * 0.60078 * 6 5 4 8 8 C 1.37440 * 120.54190 * 359.39495 * 7 6 5 9 9 C 1.50937 * 106.30649 * 179.63050 * 7 6 5 10 10 C 1.51091 * 105.45770 * 359.72485 * 9 7 6 11 11 C 1.32177 * 108.26968 * 359.97438 * 10 9 7 12 12 C 1.50706 * 124.45666 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46817 * 95.02993 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00302 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46901 * 89.99815 * 17 15 13 19 19 H 1.48495 * 109.47068 * 210.00475 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00281 * 17 15 13 21 21 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47419 * 300.00940 * 1 2 3 23 23 H 1.08999 * 109.46271 * 60.00603 * 1 2 3 24 24 H 1.08000 * 119.84200 * 0.04631 * 4 3 2 25 25 H 1.08003 * 120.00915 * 180.02562 * 5 4 3 26 26 H 1.08007 * 120.04782 * 180.28485 * 8 7 6 27 27 H 1.09004 * 110.25183 * 240.73151 * 9 7 6 28 28 H 1.08999 * 110.25533 * 118.71698 * 9 7 6 29 29 H 1.08000 * 125.86664 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47318 * 215.02372 * 12 11 10 31 31 H 1.09000 * 109.47161 * 335.03003 * 12 11 10 32 32 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2896 2.3754 -0.0006 5 6 1.9087 3.6063 -0.0011 6 6 3.3042 3.6862 0.0053 7 6 4.0557 2.5090 -0.0005 8 6 3.4338 1.2834 0.0000 9 6 5.5048 2.9312 -0.0006 10 6 5.4841 4.4420 -0.0013 11 6 4.2234 4.8390 -0.0021 12 6 3.7834 6.2805 -0.0024 13 6 3.5186 6.7244 -1.4180 14 1 3.6556 6.0322 -2.2356 15 6 3.1024 8.0146 -1.6695 16 7 2.8708 8.4019 -2.9047 17 14 2.8661 9.2121 -0.2553 18 1 4.1376 9.9360 -0.0021 19 1 1.8023 10.1873 -0.6051 20 1 2.4705 8.4646 0.9654 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3632 0.5138 -0.8901 24 1 0.2112 2.3161 -0.0003 25 1 1.3159 4.5091 -0.0012 26 1 4.0227 0.3780 0.0001 27 1 6.0058 2.5604 -0.8949 28 1 6.0057 2.5613 0.8941 29 1 6.3505 5.0867 -0.0019 30 1 2.8720 6.3823 0.5867 31 1 4.5680 6.9000 0.4319 32 1 2.5783 9.3097 -3.0816 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = -15.618092 kcal Electronic energy + Delta-G solvation = -15146.949582 eV Core-core repulsion = 12651.148808 eV Total energy + Delta-G solvation = -2495.800773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48563 -39.73455 -36.29887 -35.00825 -33.00392 -31.22101 -29.24455 -28.38517 -27.00568 -24.08888 -23.40397 -21.81376 -19.76157 -18.96613 -18.36431 -17.24077 -16.64420 -16.58264 -16.01566 -15.51765 -15.16942 -14.78077 -14.58346 -14.10975 -13.88077 -13.65029 -13.23556 -13.17372 -12.87914 -12.60737 -12.23829 -12.12514 -11.85111 -11.76129 -11.62405 -11.41313 -10.79081 -10.18336 -9.75979 -8.58083 -8.30284 -6.34804 0.11042 0.39120 1.34663 1.36482 1.48722 1.67931 2.31203 2.34410 2.93590 3.03659 3.65582 3.78931 3.95300 4.05459 4.30605 4.33044 4.40716 4.49286 4.64096 4.72160 4.78272 4.83991 4.88436 5.02246 5.05584 5.11326 5.30882 5.38273 5.55660 5.71364 5.75879 5.86479 6.11969 6.29415 6.45044 6.71417 7.28412 8.86556 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.006825 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.026338 B = 4101.299950 C = 4641.854514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.075 4.075 6 C -0.120 4.120 7 C -0.076 4.076 8 C -0.140 4.140 9 C -0.048 4.048 10 C -0.183 4.183 11 C -0.085 4.085 12 C 0.031 3.969 13 C -0.515 4.515 14 H 0.024 0.976 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.950 3.050 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.249 1.249 21 H 0.126 0.874 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.150 0.850 25 H 0.113 0.887 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.021 0.979 31 H 0.032 0.968 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -15.154 9.339 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.093 4.093 6 C -0.120 4.120 7 C -0.076 4.076 8 C -0.158 4.158 9 C -0.083 4.083 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.006 4.006 13 C -0.553 4.553 14 H 0.042 0.958 15 C -0.189 4.189 16 N -0.591 5.591 17 Si 0.773 3.227 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.173 1.173 21 H 0.144 0.856 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.167 0.833 25 H 0.131 0.869 26 H 0.170 0.830 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.168 0.832 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.253 -15.223 9.235 17.849 hybrid contribution -0.683 1.284 -0.156 1.463 sum -1.937 -13.939 9.079 16.748 Atomic orbital electron populations 1.23356 0.76532 1.05700 1.02096 1.85998 1.23355 1.25989 1.88729 1.18971 0.92256 0.84388 0.97010 1.21210 1.00985 0.91214 1.09294 1.20855 0.93631 0.97723 0.97119 1.19949 0.93716 0.94260 1.04065 1.20557 0.97445 0.92000 0.97563 1.19594 0.91388 0.97348 1.07514 1.19931 0.91474 0.92392 1.04547 1.23690 0.96474 0.96661 1.03234 1.20845 0.94216 0.93953 0.99526 1.18348 0.96460 0.90493 0.95331 1.21128 1.45128 0.96902 0.92178 0.95795 1.25976 0.94348 1.00136 0.98448 1.70064 1.48178 1.19241 1.21580 0.85655 0.78784 0.78416 0.79821 1.18686 1.20743 1.17304 0.85633 0.91797 0.92335 0.83250 0.86910 0.83024 0.86911 0.85637 0.83158 0.96038 0.95025 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.26 10.49 -91.98 -0.97 -9.22 16 3 C 0.12 3.56 6.70 22.60 0.15 3.71 16 4 C -0.21 -6.57 9.01 22.32 0.20 -6.37 16 5 C -0.08 -2.91 10.07 22.54 0.23 -2.68 16 6 C -0.12 -4.88 6.17 -20.13 -0.12 -5.01 16 7 C -0.08 -2.54 6.37 -19.63 -0.13 -2.67 16 8 C -0.14 -4.17 9.97 22.26 0.22 -3.95 16 9 C -0.05 -1.37 6.76 29.30 0.20 -1.17 16 10 C -0.18 -6.60 10.91 24.80 0.27 -6.32 16 11 C -0.09 -3.74 5.33 -18.45 -0.10 -3.84 16 12 C 0.03 1.53 4.45 29.10 0.13 1.66 16 13 C -0.52 -30.84 9.65 25.60 0.25 -30.59 16 14 H 0.02 1.61 7.98 -2.91 -0.02 1.58 16 15 C 0.01 0.46 5.47 84.65 0.46 0.92 16 16 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 17 Si 0.95 44.74 27.47 68.60 1.88 46.63 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 21 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 23 H 0.06 0.95 7.66 -2.39 -0.02 0.94 16 24 H 0.15 3.77 6.28 -2.91 -0.02 3.75 16 25 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 27 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 31 H 0.03 1.49 7.55 -2.39 -0.02 1.47 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -71.92 274.57 5.14 -66.78 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.05 Total: 10.99 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 2.87 Total: -54.92 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.30 Total: -60.26 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.97 Total: -9.22 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -71.92 5.14 -66.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.161 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds