Wall clock time and date at job start Mon Mar 30 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.37868 * 126.22288 * 128.05403 * 3 2 1 5 5 C 1.39953 * 107.10187 * 179.97438 * 4 3 2 6 6 C 1.35372 * 107.85431 * 359.74400 * 5 4 3 7 7 N 1.35755 * 108.84988 * 0.42289 * 6 5 4 8 8 C 1.46501 * 125.67871 * 179.82907 * 7 6 5 9 9 H 1.08999 * 110.05638 * 181.11557 * 8 7 6 10 10 C 1.53875 * 110.03502 * 302.53205 * 8 7 6 11 11 C 1.54268 * 106.59885 * 119.28257 * 10 8 7 12 12 C 1.54883 * 104.19781 * 336.39254 * 11 10 8 13 13 C 1.54265 * 110.03223 * 59.69643 * 8 7 6 14 14 H 1.09005 * 110.60263 * 145.58857 * 13 8 7 15 15 C 1.50706 * 110.48762 * 23.00262 * 13 8 7 16 16 H 1.08005 * 119.99758 * 3.77172 * 15 13 8 17 17 C 1.37871 * 120.00102 * 183.77057 * 15 13 8 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 H 1.07996 * 126.44655 * 0.02562 * 4 3 2 24 24 H 1.07997 * 126.07475 * 180.02562 * 5 4 3 25 25 H 1.08001 * 125.57255 * 180.29603 * 6 5 4 26 26 H 1.09002 * 110.03062 * 359.97438 * 10 8 7 27 27 H 1.09000 * 110.03167 * 238.57120 * 10 8 7 28 28 H 1.09000 * 110.48503 * 217.70966 * 11 10 8 29 29 H 1.09003 * 110.59818 * 95.12832 * 11 10 8 30 30 H 1.09003 * 110.75338 * 279.62520 * 12 11 10 31 31 H 1.09000 * 110.75600 * 156.26245 * 12 11 10 32 32 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3824 0.6866 -0.8758 5 6 4.7048 0.4051 -0.5144 6 6 4.6753 -0.4244 0.5550 7 7 3.3813 -0.6827 0.8741 8 6 2.9267 -1.5412 1.9707 9 1 1.8377 -1.5850 1.9843 10 6 3.5091 -2.9562 1.8086 11 6 4.3667 -3.2260 3.0622 12 6 4.7430 -1.8142 3.5762 13 6 3.4507 -1.0006 3.3172 14 1 2.7238 -1.1765 4.1102 15 6 3.7657 0.4692 3.2088 16 1 3.5554 1.0004 2.2922 17 6 4.3223 1.1357 4.2797 18 7 4.5788 0.4888 5.3957 19 14 4.7133 2.9574 4.1451 20 1 6.0978 3.1302 3.6367 21 1 3.7578 3.6008 3.2079 22 1 4.5951 3.5892 5.4838 23 1 3.0604 1.3222 -1.6873 24 1 5.5914 0.7859 -0.9995 25 1 5.5398 -0.8180 1.0689 26 1 4.1296 -3.0043 0.9138 27 1 2.7027 -3.6867 1.7435 28 1 5.2630 -3.7872 2.7977 29 1 3.7888 -3.7641 3.8137 30 1 5.5775 -1.4055 3.0065 31 1 4.9764 -1.8402 4.6406 32 1 4.3760 -0.4572 5.4654 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:15 Heat of formation + Delta-G solvation = 57.203357 kcal Electronic energy + Delta-G solvation = -16109.253200 eV Core-core repulsion = 13648.902952 eV Total energy + Delta-G solvation = -2460.350247 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34988 -38.82668 -37.46925 -34.78761 -32.64384 -30.27483 -29.69980 -28.32276 -25.86662 -23.24641 -22.10073 -21.59415 -20.83543 -19.53433 -18.04898 -16.82512 -16.46531 -15.90279 -15.58174 -15.30195 -14.99393 -14.61841 -14.15802 -14.02700 -13.88002 -13.51691 -13.15218 -12.95813 -12.80861 -12.68565 -12.27379 -12.04907 -11.94635 -11.87575 -11.65089 -11.42401 -10.53970 -10.39712 -9.43735 -8.95455 -8.47090 -6.21278 0.59789 1.31830 1.54883 1.61172 1.78144 2.03717 2.26360 2.54769 2.59418 3.02531 3.26901 3.60756 3.78776 4.00138 4.30899 4.39245 4.50374 4.66845 4.70308 4.70712 4.76687 4.86066 4.98481 5.11198 5.27329 5.37332 5.38260 5.43258 5.61322 6.03335 6.11393 6.29433 6.34673 6.38602 6.54317 6.76163 7.54784 8.90178 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.012548 C = 0.009785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.029204 B = 2230.858534 C = 2860.940332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.305 3.695 3 C -0.001 4.001 4 C -0.111 4.111 5 C -0.220 4.220 6 C 0.065 3.935 7 N -0.386 5.386 8 C 0.132 3.868 9 H 0.065 0.935 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.016 3.984 14 H 0.002 0.998 15 C -0.588 4.588 16 H 0.055 0.945 17 C -0.020 4.020 18 N -0.944 5.944 19 Si 1.100 2.900 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.293 1.293 23 H 0.166 0.834 24 H 0.169 0.831 25 H 0.169 0.831 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 -4.840 -10.067 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.008 4.008 3 C -0.113 4.113 4 C -0.141 4.141 5 C -0.243 4.243 6 C -0.073 4.073 7 N -0.058 5.058 8 C 0.029 3.971 9 H 0.084 0.916 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.003 4.003 14 H 0.020 0.980 15 C -0.626 4.626 16 H 0.073 0.927 17 C -0.219 4.219 18 N -0.583 5.583 19 Si 0.925 3.075 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.220 1.220 23 H 0.183 0.817 24 H 0.187 0.813 25 H 0.186 0.814 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.201 -3.806 -8.943 9.965 hybrid contribution -0.598 -1.131 -0.112 1.284 sum 1.603 -4.937 -9.055 10.437 Atomic orbital electron populations 1.81178 1.12255 1.11190 1.09903 1.24711 0.91452 0.92244 0.92399 1.15933 0.82668 1.10752 1.01948 1.21460 0.92170 1.00638 0.99789 1.21049 0.97589 1.04977 1.00692 1.22103 0.85972 1.01396 0.97822 1.44114 1.05785 1.34310 1.21602 1.22188 0.97788 0.90426 0.86692 0.91644 1.22505 1.00334 0.93057 0.99848 1.22379 0.99871 0.96703 0.96456 1.22570 0.98244 0.94603 0.99286 1.19949 0.93833 0.95858 0.90687 0.98012 1.22222 1.44191 0.94393 1.01779 0.92668 1.26706 0.94136 1.08763 0.92336 1.70886 1.47377 1.11955 1.28082 0.83108 0.77447 0.71584 0.75373 1.19322 1.20904 1.21973 0.81695 0.81309 0.81377 0.89546 0.89657 0.89609 0.91637 0.92548 0.94103 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.37 18.54 19.00 0.35 -18.02 16 2 C 0.30 11.35 14.95 88.33 1.32 12.67 16 3 C 0.00 -0.02 6.41 39.40 0.25 0.23 16 4 C -0.11 -3.24 10.85 22.60 0.25 -3.00 16 5 C -0.22 -6.14 10.81 22.02 0.24 -5.90 16 6 C 0.07 2.09 8.47 83.42 0.71 2.80 16 7 N -0.39 -13.75 1.45 -488.53 -0.71 -14.46 16 8 C 0.13 4.86 3.45 45.72 0.16 5.02 16 9 H 0.07 2.54 7.36 -2.39 -0.02 2.53 16 10 C -0.12 -3.40 6.38 31.32 0.20 -3.20 16 11 C -0.12 -3.41 6.83 31.67 0.22 -3.19 16 12 C -0.11 -4.29 5.33 31.88 0.17 -4.12 16 13 C 0.02 0.70 2.27 -10.46 -0.02 0.68 16 14 H 0.00 0.10 8.06 -2.38 -0.02 0.08 16 15 C -0.59 -30.02 7.29 25.60 0.19 -29.83 16 16 H 0.06 2.87 5.81 -2.91 -0.02 2.86 16 17 C -0.02 -1.09 5.33 84.65 0.45 -0.64 16 18 N -0.94 -54.30 13.41 21.45 0.29 -54.02 16 19 Si 1.10 49.57 29.90 68.60 2.05 51.62 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 24 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 25 H 0.17 5.14 6.67 -2.91 -0.02 5.13 16 26 H 0.09 2.23 7.43 -2.39 -0.02 2.21 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.25 6.63 -2.39 -0.02 2.23 16 31 H 0.04 1.80 6.31 -2.39 -0.02 1.78 16 32 H 0.27 15.08 5.24 -92.71 -0.49 14.59 16 Total: -1.00 -61.08 267.05 7.51 -53.57 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.41 Total: 9.79 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.12 Total: -28.48 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.07 Total: -86.50 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Total: -61.08 7.51 -53.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.769 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds