Wall clock time and date at job start Mon Mar 30 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.37858 * 126.22076 * 257.22634 * 3 2 1 5 5 C 1.39960 * 107.09753 * 180.27402 * 4 3 2 6 6 C 1.35362 * 107.85748 * 359.74104 * 5 4 3 7 7 N 1.35760 * 108.84817 * 359.97438 * 6 5 4 8 8 C 1.46502 * 125.68047 * 180.02562 * 7 6 5 9 9 H 1.09003 * 110.01937 * 181.41957 * 8 7 6 10 10 C 1.54270 * 110.02993 * 302.85658 * 8 7 6 11 11 C 1.54894 * 104.19330 * 95.67525 * 10 8 7 12 12 C 1.54963 * 102.77938 * 37.91701 * 11 10 8 13 13 C 1.53869 * 110.03279 * 60.02165 * 8 7 6 14 14 H 1.09005 * 110.03507 * 0.05266 * 13 8 7 15 15 C 1.50706 * 110.03261 * 121.43266 * 13 8 7 16 16 H 1.08005 * 119.99758 * 359.31095 * 15 13 8 17 17 C 1.37871 * 120.00102 * 179.30979 * 15 13 8 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.07998 * 126.45752 * 0.02562 * 4 3 2 24 24 H 1.08004 * 126.07384 * 179.72039 * 5 4 3 25 25 H 1.08004 * 125.57661 * 180.02562 * 6 5 4 26 26 H 1.08999 * 110.48539 * 214.34910 * 10 8 7 27 27 H 1.09004 * 110.48687 * 336.99842 * 10 8 7 28 28 H 1.09006 * 110.75490 * 156.25797 * 11 10 8 29 29 H 1.08999 * 110.75742 * 279.62699 * 11 10 8 30 30 H 1.09000 * 110.53133 * 203.42921 * 12 11 10 31 31 H 1.08999 * 110.47670 * 80.76297 * 12 11 10 32 32 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3825 0.2469 1.0846 5 6 4.7049 0.1524 0.6361 6 6 4.6752 -0.1489 -0.6833 7 7 3.3811 -0.2481 -1.0814 8 6 2.9261 -0.5612 -2.4384 9 1 1.8369 -0.5511 -2.4784 10 6 3.5021 0.4628 -3.4382 11 6 4.7727 -0.2250 -3.9966 12 6 4.3373 -1.7077 -4.1122 13 6 3.4567 -1.9404 -2.8670 14 1 4.0519 -2.3773 -2.0651 15 6 2.3068 -2.8518 -3.2111 16 1 1.2908 -2.4956 -3.1242 17 6 2.5516 -4.1401 -3.6368 18 7 3.7887 -4.5739 -3.7422 19 14 1.1262 -5.2698 -4.0626 20 1 1.6524 -6.5907 -4.4909 21 1 0.2598 -5.4448 -2.8693 22 1 0.3333 -4.6718 -5.1666 23 1 3.0609 0.4743 2.0902 24 1 5.5917 0.2948 1.2359 25 1 5.5396 -0.2885 -1.3156 26 1 2.7892 0.6556 -4.2399 27 1 3.7632 1.3896 -2.9273 28 1 5.0322 0.1790 -4.9752 29 1 5.6056 -0.1208 -3.3013 30 1 5.2071 -2.3642 -4.0925 31 1 3.7596 -1.8656 -5.0229 32 1 4.5288 -3.9873 -3.5207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:17 Heat of formation + Delta-G solvation = 61.781822 kcal Electronic energy + Delta-G solvation = -15816.527016 eV Core-core repulsion = 13356.375306 eV Total energy + Delta-G solvation = -2460.151710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11471 -37.43156 -36.07148 -32.96549 -31.35386 -29.14073 -28.07006 -27.03644 -23.94917 -22.04079 -20.88219 -20.32202 -19.45727 -17.48199 -17.02456 -15.60306 -14.88862 -14.24500 -14.03877 -13.83438 -13.72749 -12.94071 -12.86167 -12.67530 -12.58854 -12.08915 -11.93202 -11.82932 -11.19281 -11.01791 -10.76590 -10.54731 -10.41619 -10.25021 -10.10010 -9.86104 -8.72842 -8.47012 -8.31374 -7.88519 -6.46606 -4.21363 1.79426 2.63634 3.06005 3.37950 3.39708 3.49036 3.57802 3.82195 4.28797 4.44019 4.98991 5.16565 5.27473 5.35578 5.38939 5.53559 5.70110 5.89708 5.98685 6.12964 6.23180 6.28272 6.29025 6.33388 6.44325 6.64017 6.78513 7.06465 7.08114 7.31330 7.41938 7.58850 7.81174 8.00378 8.26299 8.73357 9.49590 10.91368 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.009746 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.325511 B = 2872.185745 C = 3460.771188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.290 3.710 3 C 0.043 3.957 4 C -0.128 4.128 5 C -0.216 4.216 6 C 0.036 3.964 7 N -0.393 5.393 8 C 0.126 3.874 9 H 0.093 0.907 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.113 4.113 13 C 0.030 3.970 14 H 0.034 0.966 15 C -0.601 4.601 16 H 0.049 0.951 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 1.064 2.936 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.166 0.834 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 9.390 3.502 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.024 4.024 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.240 4.240 6 C -0.101 4.101 7 N -0.064 5.064 8 C 0.025 3.975 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.167 4.167 12 C -0.152 4.152 13 C 0.012 3.988 14 H 0.052 0.948 15 C -0.639 4.639 16 H 0.067 0.933 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.892 3.108 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.160 0.840 24 H 0.159 0.841 25 H 0.183 0.817 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.790 7.757 2.585 8.370 hybrid contribution 0.765 1.464 0.493 1.723 sum 2.555 9.221 3.078 10.051 Atomic orbital electron populations 1.81206 1.11461 1.11023 1.06574 1.24422 0.91115 0.92805 0.94098 1.15763 0.83218 1.18361 0.89757 1.21098 0.92218 1.05642 0.96735 1.20711 0.96893 1.11957 0.94407 1.21959 0.86455 1.05334 0.96388 1.44666 1.05251 1.48133 1.08391 1.22742 1.00005 0.97952 0.76794 0.88895 1.22701 0.98558 0.97049 0.98308 1.22659 0.96278 0.97919 0.99835 1.22662 0.99215 0.92594 1.00692 1.19793 0.96003 0.89182 0.93869 0.94817 1.21932 0.92115 0.99354 1.50483 0.93315 1.25734 1.01504 0.96771 0.93902 1.70819 0.98942 1.39792 1.44601 0.83602 0.74371 0.76219 0.76617 1.20586 1.21392 1.21350 0.84029 0.84103 0.81677 0.90340 0.91717 0.92208 0.92271 0.92501 0.91634 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.40 18.54 41.84 0.78 -7.62 16 2 C 0.29 5.39 14.95 -22.47 -0.34 5.05 16 3 C 0.04 0.74 6.75 -83.50 -0.56 0.18 16 4 C -0.13 -1.86 10.85 -39.08 -0.42 -2.28 16 5 C -0.22 -2.95 10.81 -39.96 -0.43 -3.38 16 6 C 0.04 0.55 10.07 -16.84 -0.17 0.38 16 7 N -0.39 -6.92 2.57 -105.76 -0.27 -7.19 16 8 C 0.13 2.43 3.23 -66.81 -0.22 2.22 16 9 H 0.09 1.97 6.59 -51.93 -0.34 1.63 16 10 C -0.13 -2.06 6.18 -25.07 -0.15 -2.21 16 11 C -0.13 -2.05 6.69 -24.70 -0.17 -2.22 16 12 C -0.11 -2.33 5.28 -25.03 -0.13 -2.46 16 13 C 0.03 0.69 2.10 -90.65 -0.19 0.50 16 14 H 0.03 0.84 7.37 -51.93 -0.38 0.46 16 15 C -0.60 -16.04 8.37 -34.44 -0.29 -16.33 16 16 H 0.05 1.33 7.33 -52.48 -0.38 0.95 16 17 C 0.03 0.72 5.32 -17.82 -0.09 0.63 16 18 N -0.91 -25.91 13.42 55.43 0.74 -25.17 16 19 Si 1.06 24.84 29.90 -169.99 -5.08 19.75 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 24 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 25 H 0.17 2.22 6.55 -52.48 -0.34 1.88 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 0.93 8.03 -51.93 -0.42 0.52 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.84 6.62 -51.93 -0.34 0.50 16 30 H 0.06 1.21 6.86 -51.93 -0.36 0.85 16 31 H 0.06 1.47 7.85 -51.93 -0.41 1.06 16 32 H 0.27 7.59 5.45 -40.82 -0.22 7.37 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -29.02 271.38 -6.60 -35.62 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.69 Total: 0.44 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.17 Total: -19.91 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 1.25 Total: -39.99 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.02 -6.60 -35.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.403 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds