Wall clock time and date at job start Mon Mar 30 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.37858 * 126.22076 * 257.22634 * 3 2 1 5 5 C 1.39960 * 107.09753 * 180.27402 * 4 3 2 6 6 C 1.35362 * 107.85748 * 359.74104 * 5 4 3 7 7 N 1.35760 * 108.84817 * 359.97438 * 6 5 4 8 8 C 1.46502 * 125.68047 * 180.02562 * 7 6 5 9 9 H 1.09003 * 110.01937 * 181.41957 * 8 7 6 10 10 C 1.54270 * 110.02993 * 302.85658 * 8 7 6 11 11 C 1.54894 * 104.19330 * 95.67525 * 10 8 7 12 12 C 1.54963 * 102.77938 * 37.91701 * 11 10 8 13 13 C 1.53869 * 110.03279 * 60.02165 * 8 7 6 14 14 H 1.09005 * 110.03507 * 0.05266 * 13 8 7 15 15 C 1.50706 * 110.03261 * 121.43266 * 13 8 7 16 16 H 1.08005 * 119.99758 * 359.31095 * 15 13 8 17 17 C 1.37871 * 120.00102 * 179.30979 * 15 13 8 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.07998 * 126.45752 * 0.02562 * 4 3 2 24 24 H 1.08004 * 126.07384 * 179.72039 * 5 4 3 25 25 H 1.08004 * 125.57661 * 180.02562 * 6 5 4 26 26 H 1.08999 * 110.48539 * 214.34910 * 10 8 7 27 27 H 1.09004 * 110.48687 * 336.99842 * 10 8 7 28 28 H 1.09006 * 110.75490 * 156.25797 * 11 10 8 29 29 H 1.08999 * 110.75742 * 279.62699 * 11 10 8 30 30 H 1.09000 * 110.53133 * 203.42921 * 12 11 10 31 31 H 1.08999 * 110.47670 * 80.76297 * 12 11 10 32 32 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3825 0.2469 1.0846 5 6 4.7049 0.1524 0.6361 6 6 4.6752 -0.1489 -0.6833 7 7 3.3811 -0.2481 -1.0814 8 6 2.9261 -0.5612 -2.4384 9 1 1.8369 -0.5511 -2.4784 10 6 3.5021 0.4628 -3.4382 11 6 4.7727 -0.2250 -3.9966 12 6 4.3373 -1.7077 -4.1122 13 6 3.4567 -1.9404 -2.8670 14 1 4.0519 -2.3773 -2.0651 15 6 2.3068 -2.8518 -3.2111 16 1 1.2908 -2.4956 -3.1242 17 6 2.5516 -4.1401 -3.6368 18 7 3.7887 -4.5739 -3.7422 19 14 1.1262 -5.2698 -4.0626 20 1 1.6524 -6.5907 -4.4909 21 1 0.2598 -5.4448 -2.8693 22 1 0.3333 -4.6718 -5.1666 23 1 3.0609 0.4743 2.0902 24 1 5.5917 0.2948 1.2359 25 1 5.5396 -0.2885 -1.3156 26 1 2.7892 0.6556 -4.2399 27 1 3.7632 1.3896 -2.9273 28 1 5.0322 0.1790 -4.9752 29 1 5.6056 -0.1208 -3.3013 30 1 5.2071 -2.3642 -4.0925 31 1 3.7596 -1.8656 -5.0229 32 1 4.5288 -3.9873 -3.5207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:17 Heat of formation + Delta-G solvation = 46.895418 kcal Electronic energy + Delta-G solvation = -15817.172539 eV Core-core repulsion = 13356.375306 eV Total energy + Delta-G solvation = -2460.797233 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38782 -38.96251 -37.53500 -34.90951 -32.67681 -30.39029 -29.81228 -28.46996 -25.87107 -23.34712 -22.21206 -21.69270 -20.98965 -19.05764 -18.82811 -16.97854 -16.23336 -15.84038 -15.59900 -15.46591 -15.10019 -14.58445 -14.26330 -14.15485 -14.07638 -13.66629 -13.24329 -13.03645 -12.94470 -12.71166 -12.28711 -12.06751 -12.05978 -11.85017 -11.78742 -11.49167 -10.70002 -10.52580 -9.59384 -9.11961 -8.63607 -6.38033 0.48617 1.24486 1.46469 1.51575 1.71508 1.91294 2.14325 2.46061 2.49253 2.93430 3.14005 3.55885 3.74323 4.01248 4.21744 4.30885 4.46317 4.57376 4.65058 4.67078 4.73384 4.82024 4.95772 5.13535 5.20532 5.28525 5.31911 5.36780 5.58644 5.91874 5.95727 6.11530 6.18139 6.29518 6.43820 6.61578 7.38166 8.75684 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.009746 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.325511 B = 2872.185745 C = 3460.771188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.299 3.701 3 C 0.002 3.998 4 C -0.108 4.108 5 C -0.205 4.205 6 C 0.032 3.968 7 N -0.408 5.408 8 C 0.134 3.866 9 H 0.063 0.937 10 C -0.119 4.119 11 C -0.113 4.113 12 C -0.107 4.107 13 C 0.028 3.972 14 H 0.009 0.991 15 C -0.614 4.614 16 H 0.031 0.969 17 C -0.018 4.018 18 N -0.929 5.929 19 Si 1.100 2.900 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.170 0.830 24 H 0.178 0.822 25 H 0.184 0.816 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 10.836 4.141 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.014 4.014 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.228 4.228 6 C -0.105 4.105 7 N -0.081 5.081 8 C 0.032 3.968 9 H 0.081 0.919 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.146 4.146 13 C 0.009 3.991 14 H 0.027 0.973 15 C -0.652 4.652 16 H 0.049 0.951 17 C -0.219 4.219 18 N -0.566 5.566 19 Si 0.924 3.076 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.188 0.812 24 H 0.196 0.804 25 H 0.201 0.799 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.286 9.227 3.238 10.316 hybrid contribution 0.357 1.013 0.377 1.139 sum 3.643 10.240 3.616 11.454 Atomic orbital electron populations 1.81187 1.12458 1.12785 1.07654 1.24779 0.91599 0.91840 0.93175 1.16076 0.82708 1.21354 0.90891 1.21574 0.92191 1.02857 0.97054 1.21162 0.97647 1.10143 0.93851 1.22499 0.85888 1.04530 0.97593 1.44578 1.06225 1.49608 1.07676 1.22347 0.98353 0.97111 0.79003 0.91893 1.22670 0.98443 0.97004 0.97547 1.22595 0.96728 0.93809 1.01926 1.22426 0.97838 0.96148 0.98151 1.19706 0.94787 0.90530 0.94110 0.97293 1.22296 0.92723 1.00352 1.49810 0.95070 1.26855 1.02781 0.98459 0.93781 1.70898 0.99366 1.39998 1.46338 0.83124 0.72463 0.75011 0.77047 1.20315 1.20913 1.19736 0.81243 0.80440 0.79945 0.90185 0.89176 0.89730 0.89877 0.93732 0.94236 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.71 18.54 19.01 0.35 -18.35 16 2 C 0.30 11.22 14.95 88.34 1.32 12.54 16 3 C 0.00 0.07 6.75 39.40 0.27 0.34 16 4 C -0.11 -2.79 10.85 22.60 0.25 -2.55 16 5 C -0.20 -4.74 10.81 22.02 0.24 -4.51 16 6 C 0.03 0.87 10.07 83.42 0.84 1.71 16 7 N -0.41 -13.86 2.57 -488.52 -1.25 -15.12 16 8 C 0.13 5.16 3.23 45.71 0.15 5.30 16 9 H 0.06 2.77 6.59 -2.39 -0.02 2.75 16 10 C -0.12 -3.56 6.18 31.67 0.20 -3.37 16 11 C -0.11 -3.28 6.69 31.91 0.21 -3.07 16 12 C -0.11 -4.39 5.28 31.70 0.17 -4.23 16 13 C 0.03 1.28 2.10 -10.81 -0.02 1.26 16 14 H 0.01 0.46 7.37 -2.38 -0.02 0.44 16 15 C -0.61 -33.82 8.37 25.60 0.21 -33.60 16 16 H 0.03 1.78 7.33 -2.91 -0.02 1.75 16 17 C -0.02 -1.03 5.32 84.65 0.45 -0.58 16 18 N -0.93 -54.22 13.42 21.45 0.29 -53.94 16 19 Si 1.10 50.79 29.90 68.60 2.05 52.85 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 24 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 25 H 0.18 4.24 6.55 -2.91 -0.02 4.22 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 2.29 8.03 -2.38 -0.02 2.27 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.08 16 29 H 0.08 2.04 6.62 -2.39 -0.02 2.02 16 30 H 0.04 1.90 6.86 -2.39 -0.02 1.89 16 31 H 0.04 1.79 7.85 -2.39 -0.02 1.77 16 32 H 0.27 15.31 5.45 -92.71 -0.51 14.80 16 Total: -1.00 -64.99 271.38 7.10 -57.89 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.39 Total: 7.42 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.28 Total: -30.75 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -0.61 Total: -87.41 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Total: -64.99 7.10 -57.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.789 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds