Wall clock time and date at job start Mon Mar 30 2020 03:25:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.30899 * 125.31576 * 2 1
4 4 C 1.33401 * 109.87054 * 180.30556 * 3 2 1
5 5 C 1.37997 * 107.45947 * 359.76286 * 4 3 2
6 6 C 1.40966 * 133.70966 * 179.97438 * 5 4 3
7 7 C 1.35882 * 119.17835 * 180.02562 * 6 5 4
8 8 C 1.50693 * 120.11762 * 180.02562 * 7 6 5
9 9 C 1.52997 * 109.47574 * 269.98387 * 8 7 6
10 10 C 1.50701 * 109.47571 * 179.97438 * 9 8 7
11 11 H 1.07997 * 119.99529 * 0.02562 * 10 9 8
12 12 C 1.37872 * 120.00024 * 179.97438 * 10 9 8
13 13 N 1.31510 * 119.99807 * 179.97438 * 12 10 9
14 14 Si 1.86803 * 120.00051 * 0.02562 * 12 10 9
15 15 H 1.48503 * 109.47400 * 89.99902 * 14 12 10
16 16 H 1.48505 * 109.46953 * 209.99674 * 14 12 10
17 17 H 1.48493 * 109.47269 * 329.99698 * 14 12 10
18 18 C 1.40813 * 119.76929 * 0.02562 * 7 6 5
19 19 C 1.34670 * 120.61930 * 359.97438 * 18 7 6
20 20 N 1.35036 * 125.31084 * 179.90400 * 2 1 3
21 21 H 1.09000 * 109.47191 * 270.09270 * 1 2 3
22 22 H 1.09003 * 109.46654 * 30.09152 * 1 2 3
23 23 H 1.09000 * 109.46893 * 150.08824 * 1 2 3
24 24 H 1.08003 * 126.26951 * 179.74391 * 4 3 2
25 25 H 1.07998 * 120.41568 * 0.02562 * 6 5 4
26 26 H 1.09002 * 109.47188 * 29.98321 * 8 7 6
27 27 H 1.08998 * 109.47255 * 149.97861 * 8 7 6
28 28 H 1.09002 * 109.46809 * 300.00167 * 9 8 7
29 29 H 1.09006 * 109.47004 * 59.99487 * 9 8 7
30 30 H 0.97007 * 120.00212 * 180.02562 * 13 12 10
31 31 H 1.08002 * 119.69063 * 179.97438 * 18 7 6
32 32 H 1.08003 * 119.72567 * 179.97438 * 19 18 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2638 1.0681 0.0000
4 6 3.5496 0.7129 -0.0067
5 6 3.5981 -0.6663 -0.0057
6 6 4.6507 -1.6039 -0.0111
7 6 4.3562 -2.9304 -0.0086
8 6 5.4648 -3.9511 -0.0137
9 6 5.8324 -4.2979 -1.4578
10 6 6.9415 -5.3182 -1.4628
11 1 7.3437 -5.6830 -0.5293
12 6 7.4420 -5.7864 -2.6591
13 7 8.4102 -6.6764 -2.6634
14 14 6.7458 -5.1558 -4.2737
15 1 7.5095 -3.9585 -4.7081
16 1 6.8564 -6.2156 -5.3081
17 1 5.3181 -4.7918 -4.0886
18 6 3.0115 -3.3481 -0.0014
19 6 2.0127 -2.4447 0.0037
20 7 2.2876 -1.1019 0.0018
21 1 -0.3633 0.0017 1.0277
22 1 -0.3633 0.8892 -0.5153
23 1 -0.3633 -0.8908 -0.5125
24 1 4.3973 1.3820 -0.0122
25 1 5.6784 -1.2722 -0.0170
26 1 6.3377 -3.5420 0.4951
27 1 5.1322 -4.8515 0.5028
28 1 4.9595 -4.7070 -1.9666
29 1 6.1651 -3.3975 -1.9743
30 1 8.7626 -7.0057 -3.5051
31 1 2.7788 -4.4027 0.0001
32 1 0.9864 -2.7811 0.0088
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261027126.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:18
Heat of formation + Delta-G solvation = 67.699158 kcal
Electronic energy + Delta-G solvation = -15040.643907 eV
Core-core repulsion = 12580.748791 eV
Total energy + Delta-G solvation = -2459.895115 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-42.66661 -37.79517 -34.52438 -33.06285 -31.95947 -30.41329 -29.84844 -26.86499
-24.86601 -23.43486 -21.79044 -20.90163 -20.16128 -17.31032 -16.95056 -16.25136
-15.93612 -15.19310 -14.60331 -14.29173 -13.84397 -13.25317 -13.23443 -13.01226
-12.75951 -12.57437 -12.02907 -11.91282 -11.64155 -11.34831 -11.00656 -10.59165
-10.23829 -10.03101 -9.83535 -9.69039 -9.27244 -9.05657 -8.59742 -7.20054
-6.10448 -4.09465 0.97682 1.40909 2.69586 3.09974 3.27042 3.34836
3.38262 3.60311 4.39973 4.41050 4.49824 4.76007 4.97195 5.02461
5.23730 5.28592 5.32386 5.36143 5.50297 5.71139 5.80362 5.99375
6.07652 6.18420 6.34624 6.57873 6.68029 6.69691 6.85902 7.18341
7.28786 7.32706 7.70921 7.98524 8.45707 8.93711 9.51748 11.02769
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.042178 B = 0.005571 C = 0.005521
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 663.696788 B = 5024.771796 C = 5070.646075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C 0.142 3.858
3 N -0.453 5.453
4 C -0.036 4.036
5 C 0.015 3.985
6 C -0.091 4.091
7 C -0.067 4.067
8 C -0.067 4.067
9 C -0.006 4.006
10 C -0.524 4.524
11 H 0.073 0.927
12 C 0.069 3.931
13 N -0.902 5.902
14 Si 0.878 3.122
15 H -0.276 1.276
16 H -0.287 1.287
17 H -0.266 1.266
18 C -0.112 4.112
19 C 0.032 3.968
20 N -0.363 5.363
21 H 0.075 0.925
22 H 0.088 0.912
23 H 0.069 0.931
24 H 0.178 0.822
25 H 0.146 0.854
26 H 0.070 0.930
27 H 0.069 0.931
28 H 0.016 0.984
29 H 0.013 0.987
30 H 0.264 0.736
31 H 0.149 0.851
32 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.349 9.800 5.423 18.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.112 4.112
3 N -0.168 5.168
4 C -0.190 4.190
5 C -0.094 4.094
6 C -0.110 4.110
7 C -0.070 4.070
8 C -0.105 4.105
9 C -0.043 4.043
10 C -0.562 4.562
11 H 0.092 0.908
12 C -0.133 4.133
13 N -0.540 5.540
14 Si 0.705 3.295
15 H -0.202 1.202
16 H -0.213 1.213
17 H -0.191 1.191
18 C -0.133 4.133
19 C -0.088 4.088
20 N -0.035 5.035
21 H 0.094 0.906
22 H 0.107 0.893
23 H 0.088 0.912
24 H 0.195 0.805
25 H 0.164 0.836
26 H 0.088 0.912
27 H 0.088 0.912
28 H 0.035 0.965
29 H 0.032 0.968
30 H 0.074 0.926
31 H 0.167 0.833
32 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -14.710 10.509 5.311 18.842
hybrid contribution 0.132 -0.662 -0.998 1.205
sum -14.578 9.847 4.313 18.113
Atomic orbital electron populations
1.20068 0.84866 1.03706 1.03068 1.23008 0.95444 0.79751 1.13016
1.69866 1.02671 1.27693 1.16590 1.22428 0.94386 0.90563 1.11616
1.19771 0.83912 0.95475 1.10213 1.20430 0.97804 0.91071 1.01719
1.20305 0.95125 0.94985 0.96561 1.20625 0.93910 0.95244 1.00676
1.19560 0.96948 0.96744 0.91058 1.21112 1.17646 1.22828 0.94573
0.90843 1.24998 0.94568 0.94575 0.99110 1.69907 1.26777 1.30472
1.26870 0.86812 0.80257 0.78745 0.83694 1.20191 1.21299 1.19098
1.20933 0.91876 1.00078 1.00428 1.21516 1.00947 0.80355 1.05946
1.42704 1.08129 1.06020 1.46608 0.90647 0.89346 0.91184 0.80476
0.83624 0.91168 0.91246 0.96524 0.96836 0.92643 0.83296 0.82220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.54 10.33 36.01 0.37 -0.17 16
2 C 0.14 2.00 7.96 -155.08 -1.23 0.76 16
3 N -0.45 -7.20 11.19 -10.11 -0.11 -7.31 16
4 C -0.04 -0.54 12.02 -16.96 -0.20 -0.75 16
5 C 0.02 0.24 6.80 -84.09 -0.57 -0.33 16
6 C -0.09 -1.42 9.75 -39.39 -0.38 -1.81 16
7 C -0.07 -1.08 5.14 -104.50 -0.54 -1.62 16
8 C -0.07 -1.24 5.29 -27.89 -0.15 -1.39 16
9 C -0.01 -0.13 4.02 -27.88 -0.11 -0.24 16
10 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16
11 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16
12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
13 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16
14 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16
15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
17 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16
18 C -0.11 -1.55 9.66 -39.87 -0.39 -1.93 16
19 C 0.03 0.40 10.80 -16.48 -0.18 0.22 16
20 N -0.36 -5.32 2.94 -58.16 -0.17 -5.49 16
21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
23 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16
24 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16
25 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16
26 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16
27 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16
28 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
29 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16
30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
31 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16
32 H 0.16 1.37 7.98 -52.48 -0.42 0.95 16
LS Contribution 276.95 15.07 4.17 4.17
Total: -1.00 -32.58 276.95 -7.96 -40.54
By element:
Atomic # 1 Polarization: 2.15 SS G_CDS: -4.14 Total: -2.00 kcal
Atomic # 6 Polarization: -16.36 SS G_CDS: -3.81 Total: -20.17 kcal
Atomic # 7 Polarization: -39.89 SS G_CDS: 0.49 Total: -39.41 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -32.58 -7.96 -40.54 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261027126.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.242 kcal
(2) G-P(sol) polarization free energy of solvation -32.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds