Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30899 * 125.31576 * 2 1 4 4 C 1.33401 * 109.87054 * 180.30556 * 3 2 1 5 5 C 1.37997 * 107.45947 * 359.76286 * 4 3 2 6 6 C 1.40966 * 133.70966 * 179.97438 * 5 4 3 7 7 C 1.35882 * 119.17835 * 180.02562 * 6 5 4 8 8 C 1.50693 * 120.11762 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47574 * 269.98387 * 8 7 6 10 10 C 1.50701 * 109.47571 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99529 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00024 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99807 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00051 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47400 * 89.99902 * 14 12 10 16 16 H 1.48505 * 109.46953 * 209.99674 * 14 12 10 17 17 H 1.48493 * 109.47269 * 329.99698 * 14 12 10 18 18 C 1.40813 * 119.76929 * 0.02562 * 7 6 5 19 19 C 1.34670 * 120.61930 * 359.97438 * 18 7 6 20 20 N 1.35036 * 125.31084 * 179.90400 * 2 1 3 21 21 H 1.09000 * 109.47191 * 270.09270 * 1 2 3 22 22 H 1.09003 * 109.46654 * 30.09152 * 1 2 3 23 23 H 1.09000 * 109.46893 * 150.08824 * 1 2 3 24 24 H 1.08003 * 126.26951 * 179.74391 * 4 3 2 25 25 H 1.07998 * 120.41568 * 0.02562 * 6 5 4 26 26 H 1.09002 * 109.47188 * 29.98321 * 8 7 6 27 27 H 1.08998 * 109.47255 * 149.97861 * 8 7 6 28 28 H 1.09002 * 109.46809 * 300.00167 * 9 8 7 29 29 H 1.09006 * 109.47004 * 59.99487 * 9 8 7 30 30 H 0.97007 * 120.00212 * 180.02562 * 13 12 10 31 31 H 1.08002 * 119.69063 * 179.97438 * 18 7 6 32 32 H 1.08003 * 119.72567 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2638 1.0681 0.0000 4 6 3.5496 0.7129 -0.0067 5 6 3.5981 -0.6663 -0.0057 6 6 4.6507 -1.6039 -0.0111 7 6 4.3562 -2.9304 -0.0086 8 6 5.4648 -3.9511 -0.0137 9 6 5.8324 -4.2979 -1.4578 10 6 6.9415 -5.3182 -1.4628 11 1 7.3437 -5.6830 -0.5293 12 6 7.4420 -5.7864 -2.6591 13 7 8.4102 -6.6764 -2.6634 14 14 6.7458 -5.1558 -4.2737 15 1 7.5095 -3.9585 -4.7081 16 1 6.8564 -6.2156 -5.3081 17 1 5.3181 -4.7918 -4.0886 18 6 3.0115 -3.3481 -0.0014 19 6 2.0127 -2.4447 0.0037 20 7 2.2876 -1.1019 0.0018 21 1 -0.3633 0.0017 1.0277 22 1 -0.3633 0.8892 -0.5153 23 1 -0.3633 -0.8908 -0.5125 24 1 4.3973 1.3820 -0.0122 25 1 5.6784 -1.2722 -0.0170 26 1 6.3377 -3.5420 0.4951 27 1 5.1322 -4.8515 0.5028 28 1 4.9595 -4.7070 -1.9666 29 1 6.1651 -3.3975 -1.9743 30 1 8.7626 -7.0057 -3.5051 31 1 2.7788 -4.4027 0.0001 32 1 0.9864 -2.7811 0.0088 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = 49.387628 kcal Electronic energy + Delta-G solvation = -15041.437954 eV Core-core repulsion = 12580.748791 eV Total energy + Delta-G solvation = -2460.689163 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.73760 -38.95320 -36.00122 -34.69626 -33.35047 -31.77581 -30.90915 -28.27649 -26.25086 -24.55946 -23.32561 -21.92341 -21.66819 -19.00780 -18.35912 -17.41034 -16.99908 -16.37659 -16.26692 -15.72916 -14.91719 -14.79245 -14.67390 -14.16250 -14.00664 -13.63568 -13.35082 -13.18152 -12.98033 -12.72944 -12.53221 -12.06908 -11.85913 -11.66408 -11.36898 -11.26186 -11.15145 -10.77763 -10.15690 -8.31363 -8.29116 -6.34294 -0.09964 0.30496 1.34554 1.35573 1.46958 1.68810 2.03427 2.34128 2.46615 3.05386 3.49422 3.56341 3.76584 3.83367 3.98117 4.23271 4.45194 4.50914 4.63320 4.69681 4.72369 4.84507 4.86267 5.00023 5.07319 5.12889 5.32496 5.41927 5.54989 5.61996 5.67697 5.73508 6.26734 6.29085 6.74035 6.89805 7.30660 8.86177 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042178 B = 0.005571 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.696788 B = 5024.771796 C = 5070.646075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.148 3.852 3 N -0.484 5.484 4 C -0.046 4.046 5 C -0.009 4.009 6 C -0.099 4.099 7 C -0.078 4.078 8 C -0.057 4.057 9 C -0.001 4.001 10 C -0.531 4.531 11 H 0.038 0.962 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.945 3.055 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.249 1.249 18 C -0.130 4.130 19 C 0.046 3.954 20 N -0.373 5.373 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.193 0.807 25 H 0.149 0.851 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.169 0.831 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.239 10.683 4.889 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 N -0.200 5.200 4 C -0.199 4.199 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.081 4.081 8 C -0.094 4.094 9 C -0.038 4.038 10 C -0.569 4.569 11 H 0.056 0.944 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.768 3.232 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.173 1.173 18 C -0.150 4.150 19 C -0.073 4.073 20 N -0.045 5.045 21 H 0.111 0.889 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.210 0.790 25 H 0.166 0.834 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.187 0.813 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.602 11.399 4.793 21.511 hybrid contribution 1.011 -0.897 -0.735 1.539 sum -16.591 10.501 4.058 20.050 Atomic orbital electron populations 1.20319 0.81487 1.05269 1.04694 1.23973 0.97215 0.79142 1.10341 1.69901 1.03061 1.28915 1.18093 1.22813 0.95001 0.90948 1.11160 1.19859 0.84714 0.95692 1.11525 1.20497 0.98247 0.91187 1.01904 1.20117 0.95589 0.94297 0.98140 1.20375 0.94941 0.96322 0.97779 1.19457 0.95180 0.95051 0.94134 1.21486 1.18664 1.23486 0.93264 0.94366 1.25922 0.94923 0.94808 1.03184 1.70054 1.28639 1.32317 1.28012 0.85742 0.80342 0.78240 0.78831 1.19552 1.20828 1.17276 1.21126 0.90957 1.01505 1.01437 1.22168 1.02733 0.79143 1.03223 1.42969 1.07724 1.07019 1.46804 0.88851 0.88702 0.88727 0.79022 0.83382 0.91742 0.90895 0.96089 0.96939 0.92469 0.81341 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.33 71.24 0.74 -0.12 16 2 C 0.15 3.76 7.96 138.02 1.10 4.85 16 3 N -0.48 -14.60 11.19 -185.90 -2.08 -16.68 16 4 C -0.05 -1.36 12.02 84.40 1.01 -0.35 16 5 C -0.01 -0.27 6.80 38.77 0.26 -0.01 16 6 C -0.10 -3.03 9.75 22.39 0.22 -2.82 16 7 C -0.08 -2.44 5.14 -19.78 -0.10 -2.54 16 8 C -0.06 -2.08 5.29 29.84 0.16 -1.92 16 9 C 0.00 -0.03 4.02 29.85 0.12 0.09 16 10 C -0.53 -29.90 9.66 25.60 0.25 -29.66 16 11 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 12 C 0.01 0.50 5.47 84.65 0.46 0.96 16 13 N -0.95 -58.97 13.96 21.44 0.30 -58.67 16 14 Si 0.94 44.08 27.47 68.60 1.88 45.97 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 17 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 18 C -0.13 -3.23 9.66 22.08 0.21 -3.02 16 19 C 0.05 0.98 10.80 83.06 0.90 1.88 16 20 N -0.37 -9.94 2.94 -337.91 -0.99 -10.93 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 24 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 25 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 27 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 28 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 29 H 0.01 0.56 7.57 -2.38 -0.02 0.54 16 30 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 31 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.21 2.37 7.98 -2.91 -0.02 2.35 16 Total: -1.00 -71.19 276.95 5.48 -65.71 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.25 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 5.33 Total: -32.64 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.78 Total: -86.29 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -71.19 5.48 -65.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.097 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds