Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50692 * 109.47364 * 2 1 4 4 N 1.33531 * 125.68218 * 269.69168 * 3 2 1 5 5 C 1.32566 * 109.29879 * 180.26187 * 4 3 2 6 6 C 1.41396 * 131.35027 * 179.97438 * 5 4 3 7 7 C 1.35413 * 119.95271 * 180.02562 * 6 5 4 8 8 C 1.46623 * 118.92597 * 359.97438 * 7 6 5 9 9 C 1.41293 * 120.49934 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99977 * 156.18155 * 9 8 7 11 11 C 1.39721 * 120.00103 * 336.17511 * 9 8 7 12 12 N 1.30989 * 119.99762 * 343.06925 * 11 9 8 13 13 Si 1.86792 * 120.00380 * 163.06456 * 11 9 8 14 14 H 1.48507 * 109.47226 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47382 * 120.00301 * 13 11 9 16 16 H 1.48499 * 109.47437 * 240.00322 * 13 11 9 17 17 C 1.39246 * 119.00510 * 359.97438 * 8 7 6 18 18 N 1.35875 * 120.20324 * 0.02562 * 17 8 7 19 19 C 1.34985 * 125.68069 * 89.99919 * 3 2 1 20 20 C 1.50695 * 126.45056 * 359.76314 * 19 3 2 21 21 H 1.08999 * 109.47099 * 299.99527 * 1 2 3 22 22 H 1.08996 * 109.47358 * 59.99614 * 1 2 3 23 23 H 1.09007 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46928 * 239.99789 * 2 1 3 25 25 H 1.09004 * 109.47125 * 120.00525 * 2 1 3 26 26 H 1.08001 * 120.01738 * 0.02562 * 6 5 4 27 27 H 1.08003 * 120.54077 * 180.02562 * 7 6 5 28 28 H 0.97001 * 119.99700 * 180.02562 * 12 11 9 29 29 H 1.07999 * 119.90191 * 180.02562 * 17 8 7 30 30 H 1.08995 * 109.47855 * 89.97346 * 20 19 3 31 31 H 1.09001 * 109.46778 * 209.97589 * 20 19 3 32 32 H 1.09008 * 109.47307 * 329.96940 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2975 2.1531 -1.0846 5 6 2.7250 3.3509 -0.7107 6 6 3.1301 4.4758 -1.4655 7 6 3.5325 5.6043 -0.8343 8 6 3.5380 5.6334 0.6316 9 6 3.9509 6.7936 1.3242 10 1 3.6096 6.9702 2.3336 11 6 4.8010 7.7124 0.7035 12 7 5.4766 7.3628 -0.3629 13 14 4.9741 9.4393 1.3942 14 1 4.1107 9.5814 2.5941 15 1 6.3898 9.6823 1.7708 16 1 4.5587 10.4275 0.3664 17 6 3.1291 4.5008 1.3310 18 7 2.7327 3.3885 0.6588 19 6 2.2948 2.1630 1.0965 20 6 2.1359 1.7288 2.5307 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.1187 4.4349 -2.5447 27 1 3.8435 6.4692 -1.4015 28 1 6.0671 8.0006 -0.7936 29 1 3.1271 4.5065 2.4109 30 1 3.0651 1.2778 2.8790 31 1 1.8986 2.5950 3.1484 32 1 1.3289 0.9995 2.6023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = 53.412137 kcal Electronic energy + Delta-G solvation = -15419.918856 eV Core-core repulsion = 12959.404209 eV Total energy + Delta-G solvation = -2460.514647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38576 -36.38245 -34.06449 -32.62710 -32.42631 -29.67420 -29.26256 -25.56470 -25.17420 -23.20322 -21.23643 -20.78834 -19.10883 -17.51148 -15.82270 -15.63585 -15.15623 -14.82849 -13.95629 -13.86529 -13.31436 -13.06374 -12.71094 -12.39858 -12.17178 -12.02293 -11.81791 -11.54308 -11.38685 -11.08658 -10.96310 -10.63378 -10.48895 -10.13521 -9.94596 -9.61016 -9.23892 -8.91716 -7.51063 -7.12389 -6.55250 -4.63117 2.24445 2.57813 2.92475 2.94191 2.98892 3.69998 3.79994 4.05495 4.39795 5.19874 5.21256 5.45645 5.67137 5.75693 5.82259 5.85578 5.94258 6.07682 6.18550 6.23402 6.28346 6.32066 6.49964 6.56194 6.60474 6.80304 6.86636 7.19325 7.32315 7.46594 7.84225 7.86627 8.03291 8.33242 8.48173 8.68496 9.12015 9.86697 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053095 B = 0.006419 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.228096 B = 4361.264780 C = 4732.264971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.031 4.031 3 C 0.030 3.970 4 N -0.518 5.518 5 C 0.184 3.816 6 C -0.117 4.117 7 C -0.069 4.069 8 C 0.101 3.899 9 C -0.442 4.442 10 H 0.087 0.913 11 C 0.075 3.925 12 N -0.791 5.791 13 Si 0.919 3.081 14 H -0.258 1.258 15 H -0.272 1.272 16 H -0.269 1.269 17 C -0.172 4.172 18 N -0.295 5.295 19 C -0.112 4.112 20 C -0.056 4.056 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.287 0.713 29 H 0.130 0.870 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -3.638 2.497 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.108 4.108 4 N -0.239 5.239 5 C -0.060 4.060 6 C -0.138 4.138 7 C -0.093 4.093 8 C 0.097 3.903 9 C -0.471 4.471 10 H 0.105 0.895 11 C -0.144 4.144 12 N -0.415 5.415 13 Si 0.742 3.258 14 H -0.182 1.182 15 H -0.197 1.197 16 H -0.194 1.194 17 C -0.296 4.296 18 N 0.040 4.960 19 C -0.229 4.229 20 C -0.114 4.114 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.159 0.841 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.369 -3.746 1.583 5.281 hybrid contribution 0.389 1.172 1.092 1.649 sum -2.980 -2.574 2.675 4.761 Atomic orbital electron populations 1.21691 0.95604 1.00534 1.02053 1.19676 0.95082 0.90508 1.01718 1.20065 1.05806 0.96561 0.88321 1.70338 1.22416 1.01849 1.29320 1.20477 1.08915 0.95675 0.80900 1.19886 1.04504 0.90850 0.98545 1.22607 0.94910 0.97088 0.94725 1.18302 0.90100 0.90978 0.90899 1.19368 1.24222 1.02252 1.01289 0.89522 1.25981 0.93288 1.00998 0.94178 1.69843 1.18318 1.36285 1.17060 0.86077 0.79089 0.80451 0.80166 1.18162 1.19679 1.19374 1.21256 1.25478 0.86703 0.96123 1.41940 1.37011 1.09217 1.07876 1.20506 1.18482 0.87197 0.96748 1.19906 1.01084 1.00420 0.89979 0.93016 0.92659 0.93102 0.91354 0.91559 0.85794 0.84082 0.90219 0.85200 0.92573 0.92658 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.63 16 2 C -0.03 -0.51 6.08 -27.89 -0.17 -0.68 16 3 C 0.03 0.64 6.31 -83.01 -0.52 0.11 16 4 N -0.52 -12.62 11.31 -8.93 -0.10 -12.72 16 5 C 0.18 4.64 7.78 -155.93 -1.21 3.43 16 6 C -0.12 -2.79 10.06 -39.39 -0.40 -3.19 16 7 C -0.07 -1.69 8.87 -37.21 -0.33 -2.02 16 8 C 0.10 2.56 5.70 -104.98 -0.60 1.96 16 9 C -0.44 -10.78 9.06 -37.87 -0.34 -11.12 16 10 H 0.09 2.02 7.90 -52.49 -0.41 1.60 16 11 C 0.07 1.71 5.20 -17.36 -0.09 1.62 16 12 N -0.79 -18.63 10.88 55.54 0.60 -18.02 16 13 Si 0.92 17.04 29.59 -169.99 -5.03 12.01 16 14 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 15 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 16 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 17 C -0.17 -4.23 10.64 -15.39 -0.16 -4.40 16 18 N -0.30 -7.25 2.93 -57.28 -0.17 -7.42 16 19 C -0.11 -2.44 7.02 -81.30 -0.57 -3.01 16 20 C -0.06 -0.94 9.88 36.00 0.36 -0.58 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.94 7.76 -51.93 -0.40 0.53 16 26 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 27 H 0.14 3.36 6.27 -52.48 -0.33 3.03 16 28 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 29 H 0.13 2.99 8.02 -52.49 -0.42 2.57 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.07 0.96 7.78 -51.92 -0.40 0.56 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -27.97 275.42 -8.28 -36.25 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.06 Total: 5.26 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -3.68 Total: -19.51 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.34 Total: -38.17 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.97 -8.28 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.667 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds