Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50692 * 109.47364 * 2 1 4 4 N 1.33531 * 125.68218 * 269.69168 * 3 2 1 5 5 C 1.32566 * 109.29879 * 180.26187 * 4 3 2 6 6 C 1.41396 * 131.35027 * 179.97438 * 5 4 3 7 7 C 1.35413 * 119.95271 * 180.02562 * 6 5 4 8 8 C 1.46623 * 118.92597 * 359.97438 * 7 6 5 9 9 C 1.41293 * 120.49934 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99977 * 156.18155 * 9 8 7 11 11 C 1.39721 * 120.00103 * 336.17511 * 9 8 7 12 12 N 1.30989 * 119.99762 * 343.06925 * 11 9 8 13 13 Si 1.86792 * 120.00380 * 163.06456 * 11 9 8 14 14 H 1.48507 * 109.47226 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47382 * 120.00301 * 13 11 9 16 16 H 1.48499 * 109.47437 * 240.00322 * 13 11 9 17 17 C 1.39246 * 119.00510 * 359.97438 * 8 7 6 18 18 N 1.35875 * 120.20324 * 0.02562 * 17 8 7 19 19 C 1.34985 * 125.68069 * 89.99919 * 3 2 1 20 20 C 1.50695 * 126.45056 * 359.76314 * 19 3 2 21 21 H 1.08999 * 109.47099 * 299.99527 * 1 2 3 22 22 H 1.08996 * 109.47358 * 59.99614 * 1 2 3 23 23 H 1.09007 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46928 * 239.99789 * 2 1 3 25 25 H 1.09004 * 109.47125 * 120.00525 * 2 1 3 26 26 H 1.08001 * 120.01738 * 0.02562 * 6 5 4 27 27 H 1.08003 * 120.54077 * 180.02562 * 7 6 5 28 28 H 0.97001 * 119.99700 * 180.02562 * 12 11 9 29 29 H 1.07999 * 119.90191 * 180.02562 * 17 8 7 30 30 H 1.08995 * 109.47855 * 89.97346 * 20 19 3 31 31 H 1.09001 * 109.46778 * 209.97589 * 20 19 3 32 32 H 1.09008 * 109.47307 * 329.96940 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2975 2.1531 -1.0846 5 6 2.7250 3.3509 -0.7107 6 6 3.1301 4.4758 -1.4655 7 6 3.5325 5.6043 -0.8343 8 6 3.5380 5.6334 0.6316 9 6 3.9509 6.7936 1.3242 10 1 3.6096 6.9702 2.3336 11 6 4.8010 7.7124 0.7035 12 7 5.4766 7.3628 -0.3629 13 14 4.9741 9.4393 1.3942 14 1 4.1107 9.5814 2.5941 15 1 6.3898 9.6823 1.7708 16 1 4.5587 10.4275 0.3664 17 6 3.1291 4.5008 1.3310 18 7 2.7327 3.3885 0.6588 19 6 2.2948 2.1630 1.0965 20 6 2.1359 1.7288 2.5307 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.1187 4.4349 -2.5447 27 1 3.8435 6.4692 -1.4015 28 1 6.0671 8.0006 -0.7936 29 1 3.1271 4.5065 2.4109 30 1 3.0651 1.2778 2.8790 31 1 1.8986 2.5950 3.1484 32 1 1.3289 0.9995 2.6023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = 39.821168 kcal Electronic energy + Delta-G solvation = -15420.508205 eV Core-core repulsion = 12959.404209 eV Total energy + Delta-G solvation = -2461.103996 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.14416 -38.14570 -35.72627 -34.36276 -33.96321 -31.24493 -30.99617 -27.17477 -26.92377 -24.68094 -23.05728 -22.47678 -20.76596 -19.28290 -17.55967 -17.40099 -16.88850 -16.56004 -15.54074 -15.39095 -14.73886 -14.59823 -14.34935 -13.81660 -13.69483 -13.46571 -13.24684 -13.10643 -12.90433 -12.80779 -12.28030 -12.10646 -11.87810 -11.80816 -11.70814 -11.40335 -10.98551 -10.69034 -9.32223 -8.86117 -8.31860 -6.49312 0.41273 0.79273 1.40336 1.45258 1.56673 2.10094 2.15340 2.33806 2.60511 3.33817 3.62371 3.97333 4.20333 4.30305 4.37660 4.43821 4.59790 4.61596 4.65250 4.79731 4.84566 5.03211 5.03519 5.08719 5.14961 5.21163 5.44112 5.45157 5.48401 5.68135 6.04484 6.14642 6.20898 6.49082 6.67034 6.86074 7.34349 8.15571 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053095 B = 0.006419 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.228096 B = 4361.264780 C = 4732.264971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.031 4.031 3 C 0.021 3.979 4 N -0.539 5.539 5 C 0.145 3.855 6 C -0.119 4.119 7 C -0.082 4.082 8 C 0.078 3.922 9 C -0.466 4.466 10 H 0.090 0.910 11 C 0.039 3.961 12 N -0.816 5.816 13 Si 0.994 3.006 14 H -0.256 1.256 15 H -0.265 1.265 16 H -0.261 1.261 17 C -0.192 4.192 18 N -0.307 5.307 19 C -0.122 4.122 20 C -0.054 4.054 21 H 0.053 0.947 22 H 0.034 0.966 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.298 0.702 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -4.075 3.608 6.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C -0.116 4.116 4 N -0.261 5.261 5 C -0.098 4.098 6 C -0.139 4.139 7 C -0.106 4.106 8 C 0.073 3.927 9 C -0.495 4.495 10 H 0.108 0.892 11 C -0.178 4.178 12 N -0.441 5.441 13 Si 0.813 3.187 14 H -0.179 1.179 15 H -0.190 1.190 16 H -0.185 1.185 17 C -0.315 4.315 18 N 0.027 4.973 19 C -0.239 4.239 20 C -0.111 4.111 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.715 -4.205 2.688 6.222 hybrid contribution 0.493 1.196 0.725 1.483 sum -3.222 -3.009 3.413 5.576 Atomic orbital electron populations 1.21645 0.93870 1.02565 1.01149 1.19887 0.96462 0.87374 1.03196 1.20999 1.04707 0.98484 0.87406 1.70337 1.22965 1.01989 1.30830 1.20820 1.10706 0.96529 0.81728 1.20126 1.03756 0.90563 0.99481 1.22603 0.95978 0.97385 0.94653 1.18665 0.90670 0.91761 0.91567 1.19653 1.25114 1.02917 1.01796 0.89206 1.26854 0.92185 1.04532 0.94209 1.69867 1.18399 1.37973 1.17833 0.84968 0.79174 0.75045 0.79481 1.17948 1.18969 1.18520 1.21374 1.26628 0.87025 0.96488 1.42177 1.37265 1.10016 1.07813 1.21500 1.16925 0.86139 0.99295 1.20074 1.03041 1.01236 0.86770 0.92834 0.94673 0.89580 0.91226 0.88718 0.84084 0.84141 0.89131 0.84428 0.91132 0.92666 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.89 71.98 0.71 -2.72 16 2 C -0.03 -0.92 6.08 29.84 0.18 -0.74 16 3 C 0.02 0.88 6.31 41.55 0.26 1.14 16 4 N -0.54 -26.46 11.31 -182.16 -2.06 -28.52 16 5 C 0.15 7.47 7.78 134.24 1.04 8.52 16 6 C -0.12 -5.84 10.06 22.39 0.23 -5.62 16 7 C -0.08 -4.15 8.87 23.81 0.21 -3.93 16 8 C 0.08 4.03 5.70 -20.10 -0.11 3.92 16 9 C -0.47 -23.06 9.06 23.38 0.21 -22.85 16 10 H 0.09 4.23 7.90 -2.91 -0.02 4.21 16 11 C 0.04 1.79 5.20 85.18 0.44 2.23 16 12 N -0.82 -38.60 10.88 21.79 0.24 -38.36 16 13 Si 0.99 34.19 29.59 68.60 2.03 36.22 16 14 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 15 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 16 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 17 C -0.19 -9.68 10.64 84.31 0.90 -8.78 16 18 N -0.31 -15.26 2.93 -335.13 -0.98 -16.24 16 19 C -0.12 -5.20 7.02 40.95 0.29 -4.92 16 20 C -0.05 -1.67 9.88 71.23 0.70 -0.96 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.09 2.30 7.76 -2.38 -0.02 2.28 16 26 H 0.14 6.14 8.06 -2.91 -0.02 6.12 16 27 H 0.14 6.92 6.27 -2.91 -0.02 6.90 16 28 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16 29 H 0.14 6.47 8.02 -2.91 -0.02 6.45 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.10 2.46 7.78 -2.38 -0.02 2.44 16 Total: -1.00 -61.20 275.42 5.40 -55.80 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.11 Total: 25.82 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 5.07 Total: -34.72 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.80 Total: -83.12 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -61.20 5.40 -55.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.619 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds