Wall clock time and date at job start Mon Mar 30 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47354 * 2 1 4 4 N 1.33678 * 125.72088 * 269.99620 * 3 2 1 5 5 C 1.31787 * 109.21413 * 179.70988 * 4 3 2 6 6 C 1.47132 * 132.68125 * 179.49350 * 5 4 3 7 7 C 1.40419 * 120.93782 * 0.76090 * 6 5 4 8 8 H 1.07996 * 120.00399 * 24.10213 * 7 6 5 9 9 C 1.39954 * 120.00097 * 204.10433 * 7 6 5 10 10 N 1.30869 * 119.99904 * 26.80777 * 9 7 6 11 11 Si 1.86798 * 120.00181 * 206.81231 * 9 7 6 12 12 H 1.48494 * 109.47459 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.46882 * 300.00050 * 11 9 7 14 14 H 1.48508 * 109.46951 * 59.99556 * 11 9 7 15 15 C 1.40688 * 118.12212 * 180.49288 * 6 5 4 16 16 C 1.39074 * 119.14049 * 0.27210 * 15 6 5 17 17 C 1.35683 * 121.20112 * 0.02562 * 16 15 6 18 18 N 1.36372 * 121.92785 * 0.02562 * 17 16 15 19 19 C 1.35024 * 125.72062 * 89.99687 * 3 2 1 20 20 C 1.50692 * 126.46078 * 0.03336 * 19 3 2 21 21 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47570 * 300.00116 * 1 2 3 23 23 H 1.09004 * 109.46796 * 60.00388 * 1 2 3 24 24 H 1.09003 * 109.47598 * 239.99421 * 2 1 3 25 25 H 1.09004 * 109.46796 * 119.99612 * 2 1 3 26 26 H 0.97003 * 120.00190 * 5.89493 * 10 9 7 27 27 H 1.08001 * 120.42824 * 180.29139 * 15 6 5 28 28 H 1.08004 * 119.39727 * 180.02562 * 16 15 6 29 29 H 1.08005 * 119.03673 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.47633 * 269.95838 * 20 19 3 31 31 H 1.09003 * 109.47019 * 29.96207 * 20 19 3 32 32 H 1.09004 * 109.47499 * 149.96367 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2926 2.1566 -1.0853 5 6 2.7079 3.3500 -0.7109 6 6 3.1354 4.5391 -1.4644 7 6 3.1366 4.5421 -2.8686 8 1 2.4889 3.8690 -3.4106 9 6 3.9772 5.4172 -3.5659 10 7 5.0886 5.8349 -3.0152 11 14 3.5130 5.9892 -5.2825 12 1 4.5616 6.9046 -5.7997 13 1 3.3949 4.8129 -6.1811 14 1 2.2130 6.7052 -5.2309 15 6 3.5375 5.6751 -0.7384 16 6 3.5219 5.6311 0.6515 17 6 3.1274 4.5152 1.3150 18 7 2.7296 3.3883 0.6581 19 6 2.2951 2.1641 1.0962 20 6 2.1420 1.7291 2.5309 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 5.3726 5.4729 -2.1612 27 1 3.8540 6.5699 -1.2538 28 1 3.8293 6.5009 1.2131 29 1 3.1284 4.5196 2.3950 30 1 1.1362 1.9670 2.8774 31 1 2.3068 0.6541 2.6042 32 1 2.8722 2.2516 3.1489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055625.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:21 Heat of formation + Delta-G solvation = 49.121308 kcal Electronic energy + Delta-G solvation = -15619.136191 eV Core-core repulsion = 13158.435479 eV Total energy + Delta-G solvation = -2460.700711 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42219 -36.46432 -34.61561 -32.86536 -32.02606 -29.62816 -28.79413 -25.42324 -25.39478 -23.37079 -21.21084 -20.80035 -19.21589 -17.82401 -16.08489 -15.68749 -14.88594 -14.32577 -14.27207 -13.87928 -13.35789 -13.11539 -12.80544 -12.50963 -12.28243 -12.05858 -12.00629 -11.42502 -11.06969 -10.97659 -10.65578 -10.53143 -10.49775 -10.27181 -9.92750 -9.61040 -8.98514 -8.86586 -7.70488 -7.45036 -6.77426 -4.61390 2.23487 2.62831 3.04842 3.11995 3.26506 3.79084 3.87803 3.96425 4.25707 5.14730 5.18464 5.41780 5.59534 5.65416 5.76670 5.79825 5.86169 5.96179 6.11497 6.16994 6.23252 6.26968 6.46735 6.60064 6.61037 6.81790 7.21458 7.27437 7.38382 7.55791 7.71400 7.87452 7.95722 8.33216 8.40627 8.56399 9.16465 9.67370 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.008407 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.191821 B = 3329.949615 C = 4086.089089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C 0.018 3.982 4 N -0.492 5.492 5 C 0.199 3.801 6 C 0.131 3.869 7 C -0.438 4.438 8 H 0.094 0.906 9 C 0.033 3.967 10 N -0.757 5.757 11 Si 1.071 2.929 12 H -0.269 1.269 13 H -0.270 1.270 14 H -0.269 1.269 15 C -0.328 4.328 16 C -0.041 4.041 17 C -0.164 4.164 18 N -0.316 5.316 19 C -0.098 4.098 20 C -0.056 4.056 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.308 0.692 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -3.920 4.037 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.118 4.118 4 N -0.211 5.211 5 C -0.049 4.049 6 C 0.125 3.875 7 C -0.464 4.464 8 H 0.112 0.888 9 C -0.194 4.194 10 N -0.377 5.377 11 Si 0.892 3.108 12 H -0.194 1.194 13 H -0.195 1.195 14 H -0.194 1.194 15 C -0.351 4.351 16 C -0.061 4.061 17 C -0.284 4.284 18 N 0.016 4.984 19 C -0.214 4.214 20 C -0.114 4.114 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.091 -3.115 2.129 4.877 hybrid contribution -0.264 -0.598 2.408 2.496 sum -3.355 -3.713 4.537 6.755 Atomic orbital electron populations 1.21685 0.95527 1.00569 1.02065 1.19673 0.95144 0.90333 1.01732 1.20218 1.06480 0.96922 0.88197 1.70118 1.20320 1.01582 1.29101 1.22339 1.07458 0.94962 0.80176 1.17826 0.90688 0.86444 0.92556 1.20680 1.17908 1.16458 0.91342 0.88794 1.27411 0.92466 0.92549 1.06928 1.70429 1.16862 1.31586 1.18808 0.83549 0.77425 0.77789 0.72013 1.19387 1.19464 1.19436 1.20641 1.23659 0.98462 0.92343 1.19954 0.96281 0.94990 0.94907 1.20143 1.24010 0.88308 0.95906 1.42053 1.39047 1.09002 1.08292 1.20521 1.17164 0.86952 0.96784 1.19927 1.00938 1.00745 0.89813 0.93054 0.93099 0.92569 0.91221 0.91621 0.87794 0.86653 0.87199 0.86179 0.92446 0.91141 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.89 37.16 0.37 -1.71 16 2 C -0.03 -0.51 6.26 -27.88 -0.17 -0.69 16 3 C 0.02 0.39 6.32 -82.93 -0.52 -0.13 16 4 N -0.49 -12.85 11.29 -7.48 -0.08 -12.94 16 5 C 0.20 5.38 7.80 -154.22 -1.20 4.18 16 6 C 0.13 3.54 5.47 -104.54 -0.57 2.97 16 7 C -0.44 -11.52 9.01 -38.12 -0.34 -11.86 16 8 H 0.09 2.48 7.97 -52.49 -0.42 2.06 16 9 C 0.03 0.79 4.94 -17.32 -0.09 0.70 16 10 N -0.76 -19.03 12.32 55.55 0.68 -18.35 16 11 Si 1.07 20.36 30.01 -169.99 -5.10 15.26 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 14 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 15 C -0.33 -8.31 8.09 -38.35 -0.31 -8.62 16 16 C -0.04 -0.94 9.90 -40.19 -0.40 -1.33 16 17 C -0.16 -3.75 10.81 -16.45 -0.18 -3.93 16 18 N -0.32 -7.78 2.95 -56.58 -0.17 -7.94 16 19 C -0.10 -2.12 7.04 -81.38 -0.57 -2.70 16 20 C -0.06 -0.91 10.10 36.00 0.36 -0.54 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.94 7.14 -51.93 -0.37 0.57 16 26 H 0.31 8.03 6.77 -40.82 -0.28 7.75 16 27 H 0.12 2.93 6.55 -52.49 -0.34 2.59 16 28 H 0.11 2.12 8.06 -52.48 -0.42 1.69 16 29 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.96 7.14 -51.93 -0.37 0.59 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -29.25 274.05 -8.12 -37.37 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.96 Total: 6.12 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.63 Total: -23.66 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.43 Total: -39.23 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.25 -8.12 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055625.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.496 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds