Wall clock time and date at job start Mon Mar 30 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47354 * 2 1 4 4 N 1.33678 * 125.72088 * 269.99620 * 3 2 1 5 5 C 1.31787 * 109.21413 * 179.70988 * 4 3 2 6 6 C 1.47132 * 132.68125 * 179.49350 * 5 4 3 7 7 C 1.40419 * 120.93782 * 0.76090 * 6 5 4 8 8 H 1.07996 * 120.00399 * 24.10213 * 7 6 5 9 9 C 1.39954 * 120.00097 * 204.10433 * 7 6 5 10 10 N 1.30869 * 119.99904 * 26.80777 * 9 7 6 11 11 Si 1.86798 * 120.00181 * 206.81231 * 9 7 6 12 12 H 1.48494 * 109.47459 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.46882 * 300.00050 * 11 9 7 14 14 H 1.48508 * 109.46951 * 59.99556 * 11 9 7 15 15 C 1.40688 * 118.12212 * 180.49288 * 6 5 4 16 16 C 1.39074 * 119.14049 * 0.27210 * 15 6 5 17 17 C 1.35683 * 121.20112 * 0.02562 * 16 15 6 18 18 N 1.36372 * 121.92785 * 0.02562 * 17 16 15 19 19 C 1.35024 * 125.72062 * 89.99687 * 3 2 1 20 20 C 1.50692 * 126.46078 * 0.03336 * 19 3 2 21 21 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47570 * 300.00116 * 1 2 3 23 23 H 1.09004 * 109.46796 * 60.00388 * 1 2 3 24 24 H 1.09003 * 109.47598 * 239.99421 * 2 1 3 25 25 H 1.09004 * 109.46796 * 119.99612 * 2 1 3 26 26 H 0.97003 * 120.00190 * 5.89493 * 10 9 7 27 27 H 1.08001 * 120.42824 * 180.29139 * 15 6 5 28 28 H 1.08004 * 119.39727 * 180.02562 * 16 15 6 29 29 H 1.08005 * 119.03673 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.47633 * 269.95838 * 20 19 3 31 31 H 1.09003 * 109.47019 * 29.96207 * 20 19 3 32 32 H 1.09004 * 109.47499 * 149.96367 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2926 2.1566 -1.0853 5 6 2.7079 3.3500 -0.7109 6 6 3.1354 4.5391 -1.4644 7 6 3.1366 4.5421 -2.8686 8 1 2.4889 3.8690 -3.4106 9 6 3.9772 5.4172 -3.5659 10 7 5.0886 5.8349 -3.0152 11 14 3.5130 5.9892 -5.2825 12 1 4.5616 6.9046 -5.7997 13 1 3.3949 4.8129 -6.1811 14 1 2.2130 6.7052 -5.2309 15 6 3.5375 5.6751 -0.7384 16 6 3.5219 5.6311 0.6515 17 6 3.1274 4.5152 1.3150 18 7 2.7296 3.3883 0.6581 19 6 2.2951 2.1641 1.0962 20 6 2.1420 1.7291 2.5309 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 5.3726 5.4729 -2.1612 27 1 3.8540 6.5699 -1.2538 28 1 3.8293 6.5009 1.2131 29 1 3.1284 4.5196 2.3950 30 1 1.1362 1.9670 2.8774 31 1 2.3068 0.6541 2.6042 32 1 2.8722 2.2516 3.1489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055625.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:21 Heat of formation + Delta-G solvation = 33.686271 kcal Electronic energy + Delta-G solvation = -15619.805504 eV Core-core repulsion = 13158.435479 eV Total energy + Delta-G solvation = -2461.370025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.22769 -38.27986 -36.41715 -34.36259 -33.77119 -31.20078 -30.58242 -27.30024 -26.97746 -24.88826 -23.04784 -22.55344 -20.91532 -19.62455 -17.88214 -17.50953 -16.65263 -16.05199 -15.90345 -15.37112 -14.90058 -14.74490 -14.44787 -13.96531 -13.79416 -13.45812 -13.34671 -13.08562 -12.68378 -12.46094 -12.27534 -12.05303 -11.99759 -11.87897 -11.68862 -11.42037 -10.82984 -10.69435 -9.60285 -9.29242 -8.58042 -6.57042 0.38062 0.77821 1.47494 1.56658 1.79775 2.13449 2.15448 2.26693 2.43529 3.23276 3.51155 3.87897 4.13543 4.22160 4.27094 4.39138 4.54547 4.60815 4.62652 4.74853 4.82652 4.98487 4.99363 5.08767 5.22738 5.32123 5.38649 5.40772 5.52695 5.62908 5.86222 6.07353 6.08864 6.42329 6.51889 6.72722 7.33823 7.73680 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.008407 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.191821 B = 3329.949615 C = 4086.089089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C 0.003 3.997 4 N -0.528 5.528 5 C 0.154 3.846 6 C 0.103 3.897 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.006 3.994 10 N -0.773 5.773 11 Si 1.121 2.879 12 H -0.260 1.260 13 H -0.257 1.257 14 H -0.259 1.259 15 C -0.340 4.340 16 C -0.051 4.051 17 C -0.153 4.153 18 N -0.330 5.330 19 C -0.096 4.096 20 C -0.054 4.054 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.291 0.709 27 H 0.106 0.894 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 -4.894 6.033 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.132 4.132 4 N -0.248 5.248 5 C -0.094 4.094 6 C 0.098 3.902 7 C -0.503 4.503 8 H 0.095 0.905 9 C -0.215 4.215 10 N -0.393 5.393 11 Si 0.935 3.065 12 H -0.183 1.183 13 H -0.181 1.181 14 H -0.183 1.183 15 C -0.364 4.364 16 C -0.071 4.071 17 C -0.272 4.272 18 N 0.001 4.999 19 C -0.212 4.212 20 C -0.111 4.111 21 H 0.106 0.894 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.853 -4.109 4.153 6.998 hybrid contribution -0.085 -0.447 2.034 2.084 sum -3.938 -4.556 6.187 8.634 Atomic orbital electron populations 1.21635 0.93842 1.02617 1.01037 1.19893 0.96494 0.87259 1.03179 1.21218 1.05653 0.98928 0.87424 1.70081 1.21236 1.02117 1.31401 1.22503 1.09691 0.95524 0.81675 1.18221 0.91338 0.87339 0.93327 1.20741 1.19600 1.18343 0.91664 0.90504 1.28799 0.91311 0.91551 1.09830 1.70537 1.17658 1.32672 1.18421 0.82987 0.77706 0.78032 0.67771 1.18332 1.18145 1.18346 1.20704 1.24231 0.97720 0.93751 1.20367 0.95967 0.96636 0.94085 1.20858 1.21176 0.87515 0.97685 1.42430 1.39402 1.10397 1.07721 1.21585 1.14643 0.85519 0.99461 1.20149 1.02426 1.02694 0.85874 0.89447 0.92523 0.95191 0.91768 0.88134 0.89595 0.87639 0.83463 0.82330 0.90455 0.88132 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.89 71.98 0.71 -2.88 16 2 C -0.03 -0.94 6.26 29.85 0.19 -0.75 16 3 C 0.00 0.11 6.32 41.54 0.26 0.37 16 4 N -0.53 -28.35 11.29 -177.57 -2.00 -30.35 16 5 C 0.15 8.54 7.80 136.05 1.06 9.60 16 6 C 0.10 5.87 5.47 -19.81 -0.11 5.76 16 7 C -0.48 -26.67 9.01 23.22 0.21 -26.46 16 8 H 0.08 4.38 7.97 -2.91 -0.02 4.36 16 9 C 0.01 0.29 4.94 85.25 0.42 0.71 16 10 N -0.77 -40.55 12.32 21.83 0.27 -40.28 16 11 Si 1.12 41.95 30.01 68.60 2.06 44.01 16 12 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 13 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 14 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 15 C -0.34 -17.80 8.09 23.07 0.19 -17.62 16 16 C -0.05 -2.27 9.90 21.88 0.22 -2.05 16 17 C -0.15 -6.71 10.81 83.40 0.90 -5.81 16 18 N -0.33 -16.00 2.95 -332.91 -0.98 -16.98 16 19 C -0.10 -3.97 7.04 40.99 0.29 -3.69 16 20 C -0.05 -1.49 10.10 71.23 0.72 -0.77 16 21 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.10 2.43 7.14 -2.39 -0.02 2.41 16 26 H 0.29 16.06 6.77 -92.71 -0.63 15.44 16 27 H 0.11 5.60 6.55 -2.91 -0.02 5.58 16 28 H 0.15 5.34 8.06 -2.91 -0.02 5.31 16 29 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 30 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.10 2.19 7.14 -2.39 -0.02 2.17 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -67.64 274.05 5.65 -61.99 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 1.25 Total: 25.19 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 5.06 Total: -43.58 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -2.72 Total: -87.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.06 Total: 44.01 kcal Total: -67.64 5.65 -61.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055625.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.671 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds