Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99824 * 2 1 4 4 H 1.48494 * 109.47380 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47030 * 120.00455 * 3 2 1 6 6 H 1.48503 * 109.46993 * 239.99973 * 3 2 1 7 7 C 1.37877 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99882 * 172.86915 * 7 2 1 9 9 C 1.50694 * 120.00584 * 352.86252 * 7 2 1 10 10 H 1.09004 * 110.27398 * 325.69313 * 9 7 2 11 11 C 1.54426 * 110.30703 * 87.76937 * 9 7 2 12 12 C 1.54398 * 102.44280 * 92.79220 * 11 9 7 13 13 C 1.51170 * 105.19884 * 26.14766 * 12 11 9 14 14 N 1.32449 * 131.30013 * 162.93896 * 13 12 11 15 15 C 1.31767 * 120.80431 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.09155 * 179.97438 * 15 14 13 17 17 C 1.53005 * 117.49782 * 188.60410 * 16 15 14 18 18 C 1.53000 * 117.49586 * 119.98474 * 16 15 14 19 19 N 1.31807 * 121.81608 * 359.96810 * 15 14 13 20 20 C 1.32353 * 120.76523 * 0.02562 * 19 15 14 21 21 C 1.38417 * 109.70542 * 342.94266 * 13 12 11 22 22 H 0.97005 * 120.00186 * 174.50872 * 1 2 3 23 23 H 1.09001 * 110.81667 * 211.03251 * 11 9 7 24 24 H 1.09002 * 110.80956 * 334.36249 * 11 9 7 25 25 H 1.09005 * 110.29645 * 145.07934 * 12 11 9 26 26 H 1.09002 * 110.29995 * 267.21789 * 12 11 9 27 27 H 1.08995 * 115.55274 * 334.31391 * 16 15 14 28 28 H 1.08996 * 117.49756 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49776 * 145.02446 * 17 16 15 30 30 H 1.08999 * 117.49818 * 214.98077 * 18 16 15 31 31 H 1.09003 * 117.50138 * 359.97438 * 18 16 15 32 32 H 1.08002 * 120.48446 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1977 -0.1166 9 6 1.2598 -2.4942 0.1610 10 1 0.4065 -2.3606 0.8261 11 6 0.7906 -3.0175 -1.2140 12 6 1.9509 -3.9475 -1.6296 13 6 2.5803 -4.4001 -0.3319 14 7 3.3967 -5.4073 -0.0608 15 6 3.8266 -5.6157 1.1672 16 6 4.7540 -6.7736 1.4321 17 6 5.0705 -7.1056 2.8918 18 6 6.1356 -6.4548 2.0071 19 7 3.4680 -4.8393 2.1701 20 6 2.6547 -3.8135 1.9750 21 6 2.1821 -3.5637 0.6966 22 1 -0.4851 -0.8362 -0.0804 23 1 -0.1395 -3.5778 -1.1184 24 1 0.6755 -2.1968 -1.9220 25 1 1.5685 -4.8048 -2.1837 26 1 2.6768 -3.4006 -2.2314 27 1 4.6802 -7.6050 0.7312 28 1 4.6075 -6.4867 3.6604 29 1 5.2047 -8.1557 3.1514 30 1 6.9707 -7.0767 1.6846 31 1 6.3739 -5.4075 2.1932 32 1 2.3635 -3.1806 2.8002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = 58.487744 kcal Electronic energy + Delta-G solvation = -15452.379919 eV Core-core repulsion = 12992.085367 eV Total energy + Delta-G solvation = -2460.294552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83000 -37.52863 -35.79907 -33.35348 -32.28546 -29.25979 -27.66612 -24.39366 -23.83778 -22.90797 -22.25804 -20.18456 -19.91033 -17.28351 -17.04570 -16.15961 -15.02791 -14.53053 -14.06381 -13.81771 -13.73551 -13.53014 -12.49666 -12.36794 -12.02330 -11.56153 -11.45852 -11.29947 -11.01896 -10.69028 -10.54876 -10.39577 -10.27924 -10.20481 -9.88539 -9.69821 -9.13843 -8.61495 -8.47556 -8.03492 -6.51381 -4.25550 1.55051 1.65551 3.36832 3.38195 3.56919 3.78828 4.03576 4.38253 4.46246 4.56329 4.98419 5.03692 5.15307 5.19612 5.26018 5.46311 5.63846 5.67736 5.77259 5.80784 5.88588 6.14590 6.19576 6.28389 6.34590 6.58023 6.67620 6.75056 6.95760 7.01629 7.21575 7.63486 7.97348 8.26506 8.66613 8.68014 9.45091 10.86080 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035864 B = 0.007024 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.533705 B = 3985.181336 C = 4359.993337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 1.065 2.935 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.588 4.588 8 H 0.049 0.951 9 C 0.070 3.930 10 H 0.049 0.951 11 C -0.117 4.117 12 C -0.058 4.058 13 C 0.151 3.849 14 N -0.515 5.515 15 C 0.314 3.686 16 C -0.089 4.089 17 C -0.157 4.157 18 C -0.161 4.161 19 N -0.519 5.519 20 C 0.144 3.856 21 C -0.148 4.148 22 H 0.272 0.728 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -9.604 1.682 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.893 3.107 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.625 4.625 8 H 0.067 0.933 9 C 0.050 3.950 10 H 0.067 0.933 11 C -0.155 4.155 12 C -0.096 4.096 13 C 0.005 3.995 14 N -0.229 5.229 15 C 0.047 3.953 16 C -0.109 4.109 17 C -0.195 4.195 18 C -0.199 4.199 19 N -0.233 5.233 20 C -0.020 4.020 21 C -0.152 4.152 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.424 -8.707 1.930 10.991 hybrid contribution -0.267 -0.937 -0.287 1.016 sum 6.157 -9.644 1.643 11.559 Atomic orbital electron populations 1.70794 1.06844 1.31059 1.45030 1.25832 0.96374 1.02416 0.93171 0.83597 0.75027 0.75365 0.76750 1.20582 1.21341 1.21325 1.21690 0.94728 0.90429 1.55669 0.93276 1.18413 0.93329 0.91398 0.91811 0.93321 1.22625 0.94580 0.97642 1.00701 1.20931 0.97967 0.98720 0.92003 1.22299 0.90661 0.88811 0.97756 1.67240 1.12166 1.20711 1.22755 1.21721 0.94934 0.94490 0.84185 1.20454 0.95810 0.96333 0.98275 1.22979 1.02188 1.01308 0.92979 1.22948 0.91273 1.02217 1.03457 1.68035 1.13784 1.05935 1.35564 1.22580 0.90873 0.92260 0.96286 1.22771 0.99880 0.97877 0.94654 0.91708 0.93514 0.90071 0.91057 0.89387 0.85995 0.87296 0.88613 0.88358 0.88695 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.57 55.43 0.75 -24.61 16 2 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 3 Si 1.06 24.01 29.91 -169.99 -5.08 18.93 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.59 -15.46 8.25 -34.44 -0.28 -15.75 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.07 1.66 2.36 -92.01 -0.22 1.44 16 10 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 11 C -0.12 -2.43 6.36 -25.25 -0.16 -2.59 16 12 C -0.06 -1.11 6.76 -26.92 -0.18 -1.30 16 13 C 0.15 3.19 7.37 -82.03 -0.60 2.59 16 14 N -0.51 -10.57 10.34 -6.87 -0.07 -10.64 16 15 C 0.31 6.00 7.31 -157.21 -1.15 4.85 16 16 C -0.09 -1.31 6.24 -91.77 -0.57 -1.88 16 17 C -0.16 -1.93 10.01 -26.73 -0.27 -2.20 16 18 C -0.16 -2.01 10.23 -26.73 -0.27 -2.29 16 19 N -0.52 -10.16 9.35 -10.73 -0.10 -10.26 16 20 C 0.14 2.96 11.31 -17.21 -0.19 2.77 16 21 C -0.15 -3.25 5.49 -104.27 -0.57 -3.83 16 22 H 0.27 7.51 6.81 -40.82 -0.28 7.23 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.78 7.89 -51.93 -0.41 1.37 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 27 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -28.98 273.93 -8.99 -37.97 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.04 Total: 2.03 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -4.58 Total: -17.55 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.58 Total: -45.51 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.08 Total: 18.93 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.98 -8.99 -37.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.455 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds