Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99824 * 2 1 4 4 H 1.48494 * 109.47380 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47030 * 120.00455 * 3 2 1 6 6 H 1.48503 * 109.46993 * 239.99973 * 3 2 1 7 7 C 1.37877 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99882 * 172.86915 * 7 2 1 9 9 C 1.50694 * 120.00584 * 352.86252 * 7 2 1 10 10 H 1.09004 * 110.27398 * 325.69313 * 9 7 2 11 11 C 1.54426 * 110.30703 * 87.76937 * 9 7 2 12 12 C 1.54398 * 102.44280 * 92.79220 * 11 9 7 13 13 C 1.51170 * 105.19884 * 26.14766 * 12 11 9 14 14 N 1.32449 * 131.30013 * 162.93896 * 13 12 11 15 15 C 1.31767 * 120.80431 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.09155 * 179.97438 * 15 14 13 17 17 C 1.53005 * 117.49782 * 188.60410 * 16 15 14 18 18 C 1.53000 * 117.49586 * 119.98474 * 16 15 14 19 19 N 1.31807 * 121.81608 * 359.96810 * 15 14 13 20 20 C 1.32353 * 120.76523 * 0.02562 * 19 15 14 21 21 C 1.38417 * 109.70542 * 342.94266 * 13 12 11 22 22 H 0.97005 * 120.00186 * 174.50872 * 1 2 3 23 23 H 1.09001 * 110.81667 * 211.03251 * 11 9 7 24 24 H 1.09002 * 110.80956 * 334.36249 * 11 9 7 25 25 H 1.09005 * 110.29645 * 145.07934 * 12 11 9 26 26 H 1.09002 * 110.29995 * 267.21789 * 12 11 9 27 27 H 1.08995 * 115.55274 * 334.31391 * 16 15 14 28 28 H 1.08996 * 117.49756 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49776 * 145.02446 * 17 16 15 30 30 H 1.08999 * 117.49818 * 214.98077 * 18 16 15 31 31 H 1.09003 * 117.50138 * 359.97438 * 18 16 15 32 32 H 1.08002 * 120.48446 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1977 -0.1166 9 6 1.2598 -2.4942 0.1610 10 1 0.4065 -2.3606 0.8261 11 6 0.7906 -3.0175 -1.2140 12 6 1.9509 -3.9475 -1.6296 13 6 2.5803 -4.4001 -0.3319 14 7 3.3967 -5.4073 -0.0608 15 6 3.8266 -5.6157 1.1672 16 6 4.7540 -6.7736 1.4321 17 6 5.0705 -7.1056 2.8918 18 6 6.1356 -6.4548 2.0071 19 7 3.4680 -4.8393 2.1701 20 6 2.6547 -3.8135 1.9750 21 6 2.1821 -3.5637 0.6966 22 1 -0.4851 -0.8362 -0.0804 23 1 -0.1395 -3.5778 -1.1184 24 1 0.6755 -2.1968 -1.9220 25 1 1.5685 -4.8048 -2.1837 26 1 2.6768 -3.4006 -2.2314 27 1 4.6802 -7.6050 0.7312 28 1 4.6075 -6.4867 3.6604 29 1 5.2047 -8.1557 3.1514 30 1 6.9707 -7.0767 1.6846 31 1 6.3739 -5.4075 2.1932 32 1 2.3635 -3.1806 2.8002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = 43.220994 kcal Electronic energy + Delta-G solvation = -15453.041935 eV Core-core repulsion = 12992.085367 eV Total energy + Delta-G solvation = -2460.956568 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39962 -38.91901 -37.21152 -35.07747 -34.10744 -30.83372 -29.41911 -26.25397 -25.40053 -24.43904 -23.23482 -21.87596 -21.35739 -19.03731 -18.76948 -17.52133 -16.63036 -15.94090 -15.70329 -15.45999 -15.28073 -15.05583 -14.30281 -13.96880 -13.42837 -13.32302 -12.90876 -12.72905 -12.40978 -12.30770 -12.02740 -11.96523 -11.85236 -11.60315 -11.39656 -11.31199 -10.93316 -10.51874 -10.17277 -9.73914 -8.62888 -6.37361 -0.03001 0.03533 1.54078 1.58797 1.79416 2.48949 2.57335 2.63615 2.98876 3.12135 3.20011 3.62221 3.73125 3.89780 3.91667 4.11526 4.14284 4.21173 4.35470 4.59628 4.73126 4.76634 4.89930 4.92984 5.00983 5.03806 5.16523 5.18767 5.31560 5.38725 5.47514 5.97733 6.01260 6.15233 6.57868 7.09563 7.39177 8.75149 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035864 B = 0.007024 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.533705 B = 3985.181336 C = 4359.993337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.015 4.015 3 Si 1.106 2.894 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.593 4.593 8 H 0.034 0.966 9 C 0.067 3.933 10 H 0.024 0.976 11 C -0.109 4.109 12 C -0.051 4.051 13 C 0.147 3.853 14 N -0.525 5.525 15 C 0.312 3.688 16 C -0.115 4.115 17 C -0.140 4.140 18 C -0.148 4.148 19 N -0.521 5.521 20 C 0.141 3.859 21 C -0.179 4.179 22 H 0.264 0.736 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -11.048 1.706 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.929 3.071 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.630 4.630 8 H 0.052 0.948 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.147 4.147 12 C -0.089 4.089 13 C 0.001 3.999 14 N -0.239 5.239 15 C 0.046 3.954 16 C -0.135 4.135 17 C -0.178 4.178 18 C -0.186 4.186 19 N -0.235 5.235 20 C -0.023 4.023 21 C -0.183 4.183 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.156 0.844 28 H 0.111 0.889 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.993 -10.172 1.955 13.083 hybrid contribution -0.702 -0.589 -0.232 0.945 sum 7.291 -10.761 1.723 13.112 Atomic orbital electron populations 1.70888 1.07593 1.30678 1.47138 1.27010 0.96471 1.05504 0.92564 0.83057 0.74306 0.72133 0.77647 1.20635 1.20271 1.19830 1.21872 0.94061 0.92005 1.55111 0.94760 1.18319 0.92696 0.91285 0.92962 0.95763 1.22449 0.96101 0.97662 0.98525 1.20911 0.97124 0.99314 0.91524 1.22582 0.90496 0.88683 0.98139 1.67387 1.12512 1.20563 1.23450 1.22700 0.94229 0.94886 0.83624 1.20710 0.96611 0.95561 1.00639 1.23074 1.00859 1.02983 0.90854 1.23048 0.91187 1.01962 1.02425 1.68170 1.13784 1.05869 1.35699 1.22832 0.90606 0.92599 0.96269 1.22682 1.01266 0.98555 0.95796 0.92574 0.91929 0.91597 0.88033 0.89216 0.84372 0.88864 0.85226 0.85108 0.90466 0.81154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.12 13.57 21.45 0.29 -52.83 16 2 C -0.02 -0.83 5.45 84.65 0.46 -0.37 16 3 Si 1.11 48.48 29.91 68.60 2.05 50.53 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.59 -31.79 8.25 25.60 0.21 -31.58 16 8 H 0.03 1.90 7.82 -2.91 -0.02 1.88 16 9 C 0.07 3.25 2.36 -11.69 -0.03 3.22 16 10 H 0.02 1.27 7.20 -2.38 -0.02 1.25 16 11 C -0.11 -4.55 6.36 31.55 0.20 -4.35 16 12 C -0.05 -1.90 6.76 30.47 0.21 -1.69 16 13 C 0.15 6.14 7.37 42.66 0.31 6.45 16 14 N -0.53 -20.91 10.34 -175.64 -1.82 -22.73 16 15 C 0.31 11.52 7.31 138.75 1.01 12.54 16 16 C -0.12 -3.11 6.24 -11.54 -0.07 -3.18 16 17 C -0.14 -3.00 10.01 30.60 0.31 -2.69 16 18 C -0.15 -3.25 10.23 30.59 0.31 -2.94 16 19 N -0.52 -20.06 9.35 -187.87 -1.76 -21.81 16 20 C 0.14 5.83 11.31 84.69 0.96 6.79 16 21 C -0.18 -7.95 5.49 -19.63 -0.11 -8.06 16 22 H 0.26 15.05 6.81 -92.70 -0.63 14.42 16 23 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.07 2.93 7.89 -2.39 -0.02 2.91 16 25 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 26 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 27 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.09 2.33 7.54 -2.39 -0.02 2.31 16 29 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.17 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -62.38 273.93 3.80 -58.58 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.25 Total: 14.14 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.78 Total: -25.87 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.28 Total: -97.37 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.05 Total: 50.53 kcal Total: -62.38 3.80 -58.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.798 kcal (2) G-P(sol) polarization free energy of solvation -62.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds