Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99648 * 2 1 4 4 H 1.48506 * 109.47009 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47164 * 119.99500 * 3 2 1 6 6 H 1.48496 * 109.47205 * 239.99943 * 3 2 1 7 7 C 1.37878 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 186.23081 * 7 2 1 9 9 C 1.50700 * 119.99800 * 6.22755 * 7 2 1 10 10 H 1.08994 * 110.27259 * 35.21416 * 9 7 2 11 11 C 1.54420 * 110.30804 * 273.13023 * 9 7 2 12 12 C 1.54400 * 102.44818 * 214.95771 * 11 9 7 13 13 C 1.51176 * 105.19426 * 26.14063 * 12 11 9 14 14 N 1.32448 * 131.29369 * 162.96542 * 13 12 11 15 15 C 1.31770 * 120.79806 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.08931 * 180.02562 * 15 14 13 17 17 C 1.52996 * 117.49781 * 188.74320 * 16 15 14 18 18 C 1.53000 * 117.50082 * 120.08095 * 16 15 14 19 19 N 1.31807 * 121.81980 * 0.02562 * 15 14 13 20 20 C 1.32346 * 120.76509 * 359.97438 * 19 15 14 21 21 C 1.38431 * 119.08228 * 359.90110 * 20 19 15 22 22 H 0.97002 * 119.99614 * 175.10481 * 1 2 3 23 23 H 1.09006 * 110.81004 * 333.19677 * 11 9 7 24 24 H 1.08994 * 110.81088 * 96.52049 * 11 9 7 25 25 H 1.08996 * 110.29971 * 145.07074 * 12 11 9 26 26 H 1.08995 * 110.30022 * 267.21126 * 12 11 9 27 27 H 1.09007 * 115.55170 * 334.41632 * 16 15 14 28 28 H 1.08994 * 117.50230 * 359.97438 * 17 16 15 29 29 H 1.08998 * 117.49982 * 145.02360 * 17 16 15 30 30 H 1.08996 * 117.50475 * 214.98337 * 18 16 15 31 31 H 1.09011 * 117.49772 * 359.97438 * 18 16 15 32 32 H 1.08008 * 120.48454 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1966 0.1020 9 6 1.2579 -2.4953 -0.1405 10 1 0.4048 -2.3709 -0.8074 11 6 0.7882 -2.9963 1.2426 12 6 0.9136 -4.5287 1.1018 13 6 1.9818 -4.7442 0.0540 14 7 2.7008 -5.8130 -0.2543 15 6 3.5915 -5.7701 -1.2244 16 6 4.3880 -7.0091 -1.5431 17 6 5.5490 -6.8682 -2.5295 18 6 4.2649 -7.5842 -2.9556 19 7 3.8052 -4.6734 -1.9237 20 6 3.1242 -3.5668 -1.6722 21 6 2.1778 -3.5740 -0.6620 22 1 -0.4850 -0.8370 -0.0717 23 1 1.4424 -2.6251 2.0316 24 1 -0.2453 -2.7048 1.4296 25 1 1.2188 -4.9719 2.0496 26 1 -0.0326 -4.9567 0.7707 27 1 4.5086 -7.7149 -0.7212 28 1 5.7366 -5.8796 -2.9482 29 1 6.4334 -7.4816 -2.3567 30 1 4.3049 -8.6681 -3.0630 31 1 3.6074 -7.0666 -3.6542 32 1 3.3027 -2.6708 -2.2484 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = 58.263741 kcal Electronic energy + Delta-G solvation = -15416.148384 eV Core-core repulsion = 12955.844118 eV Total energy + Delta-G solvation = -2460.304266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83300 -37.51666 -35.76655 -33.42617 -32.28560 -29.29281 -27.76641 -24.35818 -23.64579 -22.94079 -22.27349 -20.19585 -19.93800 -17.45849 -16.70865 -16.15215 -15.33169 -14.56124 -14.07918 -13.82301 -13.66229 -13.29465 -12.75320 -12.35457 -12.04012 -11.48810 -11.36808 -11.20134 -11.04145 -10.79827 -10.69548 -10.44648 -10.31425 -10.17865 -9.86461 -9.67614 -9.06738 -8.60714 -8.40697 -8.09600 -6.50400 -4.22710 1.52538 1.65481 3.38017 3.38746 3.57631 3.77414 4.02142 4.37957 4.44665 4.56107 4.97484 5.01859 5.14812 5.20431 5.27522 5.49216 5.61973 5.65920 5.75969 5.79224 5.89104 6.12484 6.14370 6.27401 6.30535 6.56911 6.63163 6.77305 6.96721 7.00774 7.25900 7.61483 7.99585 8.28274 8.65945 8.70870 9.48279 10.88412 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.006976 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.169332 B = 4012.521876 C = 4566.562435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.593 4.593 8 H 0.052 0.948 9 C 0.068 3.932 10 H 0.055 0.945 11 C -0.111 4.111 12 C -0.071 4.071 13 C 0.144 3.856 14 N -0.516 5.516 15 C 0.315 3.685 16 C -0.089 4.089 17 C -0.157 4.157 18 C -0.161 4.161 19 N -0.520 5.520 20 C 0.153 3.847 21 C -0.148 4.148 22 H 0.270 0.730 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -10.130 -2.339 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.631 4.631 8 H 0.070 0.930 9 C 0.048 3.952 10 H 0.072 0.928 11 C -0.150 4.150 12 C -0.109 4.109 13 C -0.002 4.002 14 N -0.229 5.229 15 C 0.047 3.953 16 C -0.109 4.109 17 C -0.194 4.194 18 C -0.199 4.199 19 N -0.234 5.234 20 C -0.012 4.012 21 C -0.152 4.152 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.576 -9.281 -2.479 11.108 hybrid contribution -0.277 -0.937 0.201 0.997 sum 5.299 -10.218 -2.279 11.734 Atomic orbital electron populations 1.70828 1.06807 1.31080 1.45312 1.25849 0.96428 1.02567 0.93136 0.83559 0.74970 0.75273 0.76722 1.20679 1.21388 1.21265 1.21799 0.94746 0.90585 1.55925 0.93017 1.18418 0.93168 0.91801 0.91792 0.92755 1.22645 1.01352 0.90216 1.00763 1.21106 0.94727 0.99466 0.95569 1.22364 0.93786 0.88402 0.95657 1.67235 1.07181 1.31386 1.17143 1.21740 0.92179 0.92579 0.88769 1.20460 1.01021 0.94968 0.94434 1.22995 0.91516 1.03044 1.01869 1.22954 1.01198 0.99857 0.95912 1.68076 1.26710 0.99840 1.28786 1.22627 0.89397 0.95251 0.93880 1.22789 0.97989 0.98619 0.95809 0.91885 0.91219 0.91427 0.90662 0.89997 0.85999 0.87243 0.88586 0.88375 0.88750 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.48 13.64 55.43 0.76 -24.73 16 2 C 0.03 0.68 5.45 -17.82 -0.10 0.58 16 3 Si 1.07 23.93 29.91 -169.99 -5.08 18.84 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.59 -15.50 8.12 -34.44 -0.28 -15.78 16 8 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 9 C 0.07 1.59 2.38 -92.01 -0.22 1.38 16 10 H 0.05 1.36 7.02 -51.93 -0.36 1.00 16 11 C -0.11 -2.32 6.51 -25.25 -0.16 -2.48 16 12 C -0.07 -1.29 6.76 -26.92 -0.18 -1.47 16 13 C 0.14 2.99 7.38 -81.97 -0.60 2.38 16 14 N -0.52 -10.43 10.34 -6.82 -0.07 -10.50 16 15 C 0.31 5.97 7.31 -157.20 -1.15 4.82 16 16 C -0.09 -1.30 6.23 -91.77 -0.57 -1.88 16 17 C -0.16 -1.93 10.01 -26.69 -0.27 -2.19 16 18 C -0.16 -1.96 10.24 -26.69 -0.27 -2.23 16 19 N -0.52 -10.21 9.35 -10.76 -0.10 -10.31 16 20 C 0.15 3.17 11.10 -17.26 -0.19 2.98 16 21 C -0.15 -3.25 5.63 -104.25 -0.59 -3.83 16 22 H 0.27 7.46 6.75 -40.82 -0.28 7.19 16 23 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.12 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.17 3.22 8.06 -52.48 -0.42 2.80 16 LS Contribution 273.76 15.07 4.13 4.13 Total: -1.00 -28.92 273.76 -8.99 -37.91 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.03 Total: 2.39 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -4.59 Total: -17.74 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.58 Total: -45.54 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.84 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.92 -8.99 -37.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.179 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds