Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99648 * 2 1 4 4 H 1.48506 * 109.47009 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47164 * 119.99500 * 3 2 1 6 6 H 1.48496 * 109.47205 * 239.99943 * 3 2 1 7 7 C 1.37878 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 186.23081 * 7 2 1 9 9 C 1.50700 * 119.99800 * 6.22755 * 7 2 1 10 10 H 1.08994 * 110.27259 * 35.21416 * 9 7 2 11 11 C 1.54420 * 110.30804 * 273.13023 * 9 7 2 12 12 C 1.54400 * 102.44818 * 214.95771 * 11 9 7 13 13 C 1.51176 * 105.19426 * 26.14063 * 12 11 9 14 14 N 1.32448 * 131.29369 * 162.96542 * 13 12 11 15 15 C 1.31770 * 120.79806 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.08931 * 180.02562 * 15 14 13 17 17 C 1.52996 * 117.49781 * 188.74320 * 16 15 14 18 18 C 1.53000 * 117.50082 * 120.08095 * 16 15 14 19 19 N 1.31807 * 121.81980 * 0.02562 * 15 14 13 20 20 C 1.32346 * 120.76509 * 359.97438 * 19 15 14 21 21 C 1.38431 * 119.08228 * 359.90110 * 20 19 15 22 22 H 0.97002 * 119.99614 * 175.10481 * 1 2 3 23 23 H 1.09006 * 110.81004 * 333.19677 * 11 9 7 24 24 H 1.08994 * 110.81088 * 96.52049 * 11 9 7 25 25 H 1.08996 * 110.29971 * 145.07074 * 12 11 9 26 26 H 1.08995 * 110.30022 * 267.21126 * 12 11 9 27 27 H 1.09007 * 115.55170 * 334.41632 * 16 15 14 28 28 H 1.08994 * 117.50230 * 359.97438 * 17 16 15 29 29 H 1.08998 * 117.49982 * 145.02360 * 17 16 15 30 30 H 1.08996 * 117.50475 * 214.98337 * 18 16 15 31 31 H 1.09011 * 117.49772 * 359.97438 * 18 16 15 32 32 H 1.08008 * 120.48454 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1966 0.1020 9 6 1.2579 -2.4953 -0.1405 10 1 0.4048 -2.3709 -0.8074 11 6 0.7882 -2.9963 1.2426 12 6 0.9136 -4.5287 1.1018 13 6 1.9818 -4.7442 0.0540 14 7 2.7008 -5.8130 -0.2543 15 6 3.5915 -5.7701 -1.2244 16 6 4.3880 -7.0091 -1.5431 17 6 5.5490 -6.8682 -2.5295 18 6 4.2649 -7.5842 -2.9556 19 7 3.8052 -4.6734 -1.9237 20 6 3.1242 -3.5668 -1.6722 21 6 2.1778 -3.5740 -0.6620 22 1 -0.4850 -0.8370 -0.0717 23 1 1.4424 -2.6251 2.0316 24 1 -0.2453 -2.7048 1.4296 25 1 1.2188 -4.9719 2.0496 26 1 -0.0326 -4.9567 0.7707 27 1 4.5086 -7.7149 -0.7212 28 1 5.7366 -5.8796 -2.9482 29 1 6.4334 -7.4816 -2.3567 30 1 4.3049 -8.6681 -3.0630 31 1 3.6074 -7.0666 -3.6542 32 1 3.3027 -2.6708 -2.2484 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = 43.002279 kcal Electronic energy + Delta-G solvation = -15416.810171 eV Core-core repulsion = 12955.844118 eV Total energy + Delta-G solvation = -2460.966052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.39359 -38.88611 -37.17587 -35.15342 -34.09343 -30.85772 -29.51717 -26.12346 -25.29337 -24.45939 -23.23593 -21.89156 -21.35149 -19.20232 -18.40053 -17.58418 -16.94820 -15.79498 -15.73702 -15.50318 -15.07273 -14.94853 -14.51133 -13.95357 -13.40151 -13.08291 -12.88623 -12.80603 -12.50166 -12.37961 -12.18616 -11.95099 -11.80428 -11.50610 -11.38310 -11.28759 -10.91401 -10.45057 -10.15983 -9.77079 -8.61880 -6.34303 -0.04605 0.03955 1.55585 1.60873 1.80793 2.49478 2.56830 2.64346 2.97175 3.15563 3.19568 3.64403 3.75472 3.90233 3.92113 4.11709 4.13581 4.22556 4.36672 4.57296 4.75021 4.76696 4.81879 4.93434 4.98518 5.04538 5.15645 5.25140 5.31768 5.40017 5.48579 5.96417 6.04498 6.17558 6.61139 7.09562 7.42628 8.77597 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.006976 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.169332 B = 4012.521876 C = 4566.562435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.019 4.019 3 Si 1.108 2.892 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.598 4.598 8 H 0.040 0.960 9 C 0.065 3.935 10 H 0.030 0.970 11 C -0.104 4.104 12 C -0.060 4.060 13 C 0.144 3.856 14 N -0.524 5.524 15 C 0.313 3.687 16 C -0.116 4.116 17 C -0.144 4.144 18 C -0.144 4.144 19 N -0.523 5.523 20 C 0.148 3.852 21 C -0.180 4.180 22 H 0.262 0.738 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -11.802 -2.388 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.931 3.069 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.636 4.636 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.048 0.952 11 C -0.142 4.142 12 C -0.097 4.097 13 C -0.003 4.003 14 N -0.238 5.238 15 C 0.047 3.953 16 C -0.136 4.136 17 C -0.181 4.181 18 C -0.182 4.182 19 N -0.237 5.237 20 C -0.016 4.016 21 C -0.185 4.185 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.098 0.902 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.834 -10.975 -2.532 13.175 hybrid contribution -0.608 -0.514 0.159 0.811 sum 6.226 -11.489 -2.374 13.281 Atomic orbital electron populations 1.70925 1.07596 1.30683 1.47504 1.27053 0.96522 1.05729 0.92561 0.83021 0.74238 0.71925 0.77726 1.20921 1.20071 1.19768 1.22027 0.94338 0.92085 1.55134 0.94144 1.18331 0.92611 0.91664 0.92905 0.95175 1.22436 1.00882 0.92382 0.98539 1.21077 0.95186 0.97327 0.96152 1.22719 0.93906 0.88094 0.95571 1.67397 1.07707 1.30863 1.17872 1.22715 0.91433 0.93647 0.87544 1.20713 1.02544 0.93940 0.96375 1.23085 0.92336 1.02849 0.99844 1.23061 1.00421 1.01613 0.93135 1.68192 1.26623 0.99795 1.29123 1.22759 0.89289 0.95968 0.93631 1.22692 0.99295 0.98916 0.97559 0.92781 0.92477 0.91297 0.88296 0.87747 0.84433 0.88974 0.85343 0.85049 0.90217 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.64 21.45 0.29 -53.19 16 2 C -0.02 -1.03 5.45 84.65 0.46 -0.57 16 3 Si 1.11 48.37 29.91 68.60 2.05 50.42 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.60 -31.96 8.12 25.60 0.21 -31.75 16 8 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 9 C 0.06 3.11 2.38 -11.69 -0.03 3.09 16 10 H 0.03 1.58 7.02 -2.39 -0.02 1.57 16 11 C -0.10 -4.35 6.51 31.55 0.21 -4.15 16 12 C -0.06 -2.10 6.76 30.47 0.21 -1.89 16 13 C 0.14 5.85 7.38 42.70 0.32 6.16 16 14 N -0.52 -20.51 10.34 -175.50 -1.81 -22.33 16 15 C 0.31 11.49 7.31 138.75 1.01 12.50 16 16 C -0.12 -3.10 6.23 -11.54 -0.07 -3.17 16 17 C -0.14 -3.10 10.01 30.62 0.31 -2.79 16 18 C -0.14 -3.06 10.24 30.62 0.31 -2.74 16 19 N -0.52 -20.30 9.35 -187.97 -1.76 -22.06 16 20 C 0.15 6.20 11.10 84.66 0.94 7.14 16 21 C -0.18 -8.02 5.63 -19.62 -0.11 -8.13 16 22 H 0.26 14.96 6.75 -92.71 -0.63 14.33 16 23 H 0.06 2.50 7.91 -2.38 -0.02 2.48 16 24 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.14 3.25 8.14 -2.38 -0.02 3.23 16 28 H 0.09 2.35 7.54 -2.39 -0.02 2.33 16 29 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.17 6.72 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -62.45 273.76 3.79 -58.66 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.26 Total: 14.79 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.76 Total: -26.30 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -3.28 Total: -97.57 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.05 Total: 50.42 kcal Total: -62.45 3.79 -58.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.664 kcal (2) G-P(sol) polarization free energy of solvation -62.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds