Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.34269 * 125.05195 * 2 1 4 4 C 1.46489 * 106.97919 * 180.02562 * 3 2 1 5 5 C 1.39829 * 133.93602 * 180.02562 * 4 3 2 6 6 C 1.37688 * 119.82511 * 179.97438 * 5 4 3 7 7 C 1.38673 * 120.47961 * 359.97438 * 6 5 4 8 8 C 1.38614 * 120.56583 * 0.02562 * 7 6 5 9 9 N 1.39259 * 120.12700 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99915 * 269.99252 * 9 8 7 11 11 C 1.36818 * 119.99950 * 90.00011 * 9 8 7 12 12 H 1.07998 * 120.00241 * 343.04671 * 11 9 8 13 13 C 1.38755 * 119.99353 * 163.32748 * 11 9 8 14 14 N 1.31615 * 120.00552 * 343.99844 * 13 11 9 15 15 Si 1.86805 * 119.99334 * 164.00224 * 13 11 9 16 16 H 1.48497 * 109.47340 * 60.00027 * 15 13 11 17 17 H 1.48505 * 109.47065 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47159 * 299.99366 * 15 13 11 19 19 C 1.39905 * 119.74027 * 0.26836 * 8 7 6 20 20 N 1.36750 * 125.05303 * 180.02562 * 2 1 3 21 21 H 0.96996 * 125.06755 * 359.97438 * 20 2 1 22 22 H 1.08994 * 109.47138 * 89.97756 * 1 2 3 23 23 H 1.09005 * 109.46796 * 209.97764 * 1 2 3 24 24 H 1.09000 * 109.46895 * 329.97177 * 1 2 3 25 25 H 1.07993 * 126.50952 * 0.02562 * 3 2 1 26 26 H 1.07989 * 120.08652 * 359.97010 * 5 4 3 27 27 H 1.07997 * 119.75269 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.72110 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.47214 * 265.28896 * 10 9 8 30 30 H 1.09006 * 109.46961 * 25.28899 * 10 9 8 31 31 H 1.09000 * 109.47216 * 145.28154 * 10 9 8 32 32 H 0.97003 * 120.00136 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2782 1.0992 0.0000 4 6 3.6709 0.6447 -0.0006 5 6 4.9056 1.3010 -0.0005 6 6 6.0709 0.5676 -0.0007 7 6 6.0297 -0.8185 -0.0006 8 6 4.8157 -1.4876 -0.0007 9 7 4.7849 -2.8798 0.0000 10 6 4.7691 -3.6128 -1.2684 11 6 4.7693 -3.5632 1.1852 12 1 5.0528 -3.0641 2.1000 13 6 4.3950 -4.8990 1.2108 14 7 3.7620 -5.4250 0.1837 15 14 4.7894 -5.9509 2.7033 16 1 4.1350 -5.3718 3.9040 17 1 4.2865 -7.3308 2.4832 18 1 6.2595 -5.9864 2.9094 19 6 3.6215 -0.7587 -0.0067 20 7 2.2925 -1.1195 -0.0005 21 1 1.9627 -2.0316 -0.0006 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5143 25 1 1.9367 2.1237 0.0004 26 1 4.9451 2.3802 -0.0002 27 1 7.0239 1.0757 -0.0001 28 1 6.9512 -1.3816 -0.0012 29 1 3.7396 -3.8450 -1.5411 30 1 5.2220 -2.9999 -2.0478 31 1 5.3341 -4.5386 -1.1601 32 1 3.4999 -6.3588 0.2018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = 77.111798 kcal Electronic energy + Delta-G solvation = -15718.857980 eV Core-core repulsion = 13259.371028 eV Total energy + Delta-G solvation = -2459.486953 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56206 -36.88391 -35.02746 -31.73552 -30.87548 -29.80856 -27.85331 -26.16062 -25.94918 -23.14267 -21.11626 -20.07153 -19.59188 -17.20108 -16.62030 -15.63683 -14.71002 -14.46613 -14.23413 -13.68152 -13.54609 -13.18336 -12.78261 -12.40885 -12.27513 -12.01454 -11.74604 -11.31324 -11.05124 -10.85960 -10.69177 -10.64648 -10.41851 -10.15725 -9.88729 -8.80273 -8.65267 -7.43348 -7.08207 -6.84007 -5.85600 -3.30040 1.83917 2.39970 3.26532 3.33985 3.39078 3.41849 3.84186 4.41377 4.66982 5.09629 5.31843 5.33654 5.44722 5.61251 5.66569 5.82290 5.87854 5.97775 6.08176 6.19402 6.49718 6.61961 6.67401 6.77928 7.18757 7.22884 7.36538 7.39879 7.57581 7.63946 7.72928 7.88369 8.25869 8.36020 9.12348 9.84002 10.21682 11.19884 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.009276 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.798878 B = 3017.881817 C = 3624.155557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.070 3.930 3 C -0.222 4.222 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.137 4.137 7 C -0.135 4.135 8 C 0.207 3.793 9 N -0.571 5.571 10 C 0.166 3.834 11 C -0.255 4.255 12 H 0.072 0.928 13 C 0.004 3.996 14 N -0.909 5.909 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.090 3.910 20 N -0.574 5.574 21 H 0.420 0.580 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.136 0.864 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.027 0.973 30 H 0.001 0.999 31 H 0.054 0.946 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 9.821 -1.640 10.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.248 4.248 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.111 3.889 9 N -0.290 5.290 10 C 0.023 3.977 11 C -0.383 4.383 12 H 0.090 0.910 13 C -0.194 4.194 14 N -0.554 5.554 15 Si 0.738 3.262 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.209 1.209 19 C -0.020 4.020 20 N -0.175 5.175 21 H 0.257 0.743 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.154 0.846 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.045 0.955 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.050 9.444 -1.673 10.064 hybrid contribution 0.016 -1.124 0.824 1.394 sum -3.033 8.320 -0.849 8.896 Atomic orbital electron populations 1.20405 0.88563 1.03185 1.02585 1.20271 0.93101 0.86522 1.04084 1.21242 0.90751 0.96938 1.15903 1.19124 0.93280 0.92068 1.06962 1.20252 0.90571 0.98298 1.03571 1.20661 0.97098 0.93721 1.04192 1.21313 0.97236 0.93637 1.03480 1.16901 0.88651 0.85856 0.97527 1.41427 1.86033 0.97556 1.04012 1.20872 0.99379 0.94084 0.83364 1.19153 1.39601 0.93125 0.86381 0.91026 1.24893 0.98720 0.97970 0.97840 1.70102 1.40939 1.13501 1.30832 0.86275 0.78426 0.79434 0.82104 1.20918 1.21545 1.20879 1.19359 0.85128 0.93522 1.03987 1.41759 1.04344 1.08213 1.63216 0.74251 0.90975 0.91553 0.90271 0.84647 0.87240 0.87068 0.86375 0.95451 0.98063 0.92715 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.39 36.01 0.37 -0.70 16 2 C 0.07 1.18 7.08 -81.79 -0.58 0.60 16 3 C -0.22 -3.78 10.95 -37.66 -0.41 -4.20 16 4 C -0.11 -2.14 6.37 -105.15 -0.67 -2.81 16 5 C -0.11 -1.91 10.10 -39.19 -0.40 -2.31 16 6 C -0.14 -2.43 10.01 -39.62 -0.40 -2.82 16 7 C -0.13 -2.78 9.94 -39.28 -0.39 -3.17 16 8 C 0.21 4.82 5.03 -83.72 -0.42 4.40 16 9 N -0.57 -14.65 2.94 -120.42 -0.35 -15.00 16 10 C 0.17 4.16 8.96 59.85 0.54 4.70 16 11 C -0.25 -7.03 9.68 -15.14 -0.15 -7.17 16 12 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 13 C 0.00 0.10 5.06 -17.45 -0.09 0.02 16 14 N -0.91 -25.59 10.51 55.49 0.58 -25.01 16 15 Si 0.91 21.74 29.58 -169.99 -5.03 16.71 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.09 1.98 7.20 -83.77 -0.60 1.38 16 20 N -0.57 -11.47 6.07 -6.83 -0.04 -11.51 16 21 H 0.42 8.61 8.96 -40.82 -0.37 8.25 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.03 0.72 7.52 -51.93 -0.39 0.33 16 30 H 0.00 0.02 8.01 -51.93 -0.42 -0.40 16 31 H 0.05 1.45 6.95 -51.93 -0.36 1.09 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -29.73 275.49 -7.92 -37.65 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.04 Total: 5.12 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.19 Total: -12.10 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.19 Total: -51.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.73 -7.92 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.762 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds