Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46958 * 2 1 4 4 C 1.40477 * 120.15105 * 270.02237 * 3 2 1 5 5 C 1.34951 * 120.29365 * 179.97438 * 4 3 2 6 6 N 1.36481 * 120.61643 * 0.02562 * 5 4 3 7 7 C 1.36837 * 132.57180 * 180.02562 * 6 5 4 8 8 C 1.35100 * 107.17740 * 180.23723 * 7 6 5 9 9 C 1.50709 * 125.68480 * 179.69671 * 8 7 6 10 10 C 1.50694 * 109.47035 * 124.99959 * 9 8 7 11 11 H 1.08008 * 120.00045 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00188 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00302 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00068 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47166 * 60.00231 * 14 12 10 16 16 H 1.48502 * 109.47097 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47430 * 299.99878 * 14 12 10 18 18 N 1.33512 * 108.62948 * 359.57062 * 8 7 6 19 19 C 1.32560 * 109.15939 * 0.43797 * 18 8 7 20 20 C 1.36016 * 120.15377 * 90.00340 * 3 2 1 21 21 H 1.09003 * 109.47230 * 60.00038 * 1 2 3 22 22 H 1.09005 * 109.47144 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47245 * 300.00096 * 1 2 3 24 24 H 1.08997 * 109.46809 * 240.00062 * 2 1 3 25 25 H 1.08995 * 109.47514 * 119.99800 * 2 1 3 26 26 H 1.08000 * 119.85227 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.69305 * 179.97438 * 5 4 3 28 28 H 1.08002 * 126.40629 * 359.96943 * 7 6 5 29 29 H 1.08998 * 109.47008 * 245.00299 * 9 8 7 30 30 H 1.08999 * 109.46671 * 4.99971 * 9 8 7 31 31 H 0.96997 * 120.00923 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.33595 * 0.03883 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2670 2.0863 -1.2147 5 6 2.7163 3.3588 -1.2181 6 7 2.9494 4.0167 -0.0453 7 6 3.3951 5.2798 0.2349 8 6 3.4432 5.3968 1.5799 9 6 3.8844 6.6206 2.3407 10 6 2.8001 7.0320 3.3029 11 1 1.8828 6.4643 3.3577 12 6 2.9783 8.1337 4.1124 13 7 4.0948 8.8253 4.0454 14 14 1.6343 8.6433 5.3056 15 1 1.3733 7.5356 6.2596 16 1 2.0690 9.8493 6.0552 17 1 0.3926 8.9497 4.5511 18 7 3.0321 4.2484 2.1229 19 6 2.7301 3.3935 1.1559 20 6 2.2601 2.0650 1.1761 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0871 1.5772 -2.1500 27 1 2.8939 3.8610 -2.1576 28 1 3.6628 6.0394 -0.4847 29 1 4.7955 6.3950 2.8949 30 1 4.0768 7.4337 1.6408 31 1 4.2202 9.6006 4.6147 32 1 2.0834 1.5632 2.1160 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = 50.919728 kcal Electronic energy + Delta-G solvation = -14994.382283 eV Core-core repulsion = 12533.759557 eV Total energy + Delta-G solvation = -2460.622726 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.61549 -38.91082 -35.86328 -35.00216 -32.88996 -31.99952 -30.06265 -28.61505 -25.78132 -24.51521 -23.87949 -22.20221 -20.99830 -18.80805 -18.33675 -17.51334 -16.74359 -16.59193 -16.11932 -15.63187 -15.00906 -14.54618 -14.40828 -14.23787 -13.99330 -13.58960 -13.30857 -12.88173 -12.77978 -12.60536 -12.29029 -12.03763 -11.85908 -11.75695 -11.59634 -11.41786 -10.82035 -10.58047 -9.46912 -8.67814 -8.19888 -6.29652 -0.07357 0.40588 1.37051 1.41615 1.49686 1.79475 2.03430 2.42596 2.64695 3.11259 3.35066 3.62068 3.86262 3.94187 4.22721 4.32093 4.52628 4.55313 4.60742 4.70327 4.76240 5.01746 5.06057 5.12047 5.20024 5.26277 5.41790 5.44908 5.52403 5.68866 5.74227 5.80304 6.19344 6.34993 6.77986 7.16145 7.36767 8.90793 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040014 B = 0.005640 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.593220 B = 4963.639431 C = 5424.200488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.049 4.049 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.370 5.370 7 C -0.119 4.119 8 C 0.067 3.933 9 C 0.097 3.903 10 C -0.522 4.522 11 H 0.042 0.958 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.268 1.268 18 N -0.542 5.542 19 C 0.200 3.800 20 C -0.117 4.117 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.194 0.806 27 H 0.197 0.803 28 H 0.205 0.795 29 H 0.004 0.996 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -17.309 -14.735 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.055 4.055 4 C -0.161 4.161 5 C -0.071 4.071 6 N -0.042 5.042 7 C -0.248 4.248 8 C -0.064 4.064 9 C 0.059 3.941 10 C -0.560 4.560 11 H 0.061 0.939 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.790 3.210 15 H -0.200 1.200 16 H -0.198 1.198 17 H -0.193 1.193 18 N -0.264 5.264 19 C -0.043 4.043 20 C -0.137 4.137 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.211 0.789 27 H 0.214 0.786 28 H 0.222 0.778 29 H 0.022 0.978 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.696 -17.218 -13.860 22.825 hybrid contribution -0.174 1.057 0.298 1.112 sum -5.870 -16.161 -13.562 21.898 Atomic orbital electron populations 1.21761 0.94031 1.02804 1.01862 1.20597 0.96451 0.89407 1.04825 1.20147 0.95976 0.98063 0.91292 1.21189 1.01835 0.92817 1.00262 1.22428 1.00988 0.94896 0.88755 1.42970 1.41924 1.11221 1.08127 1.22639 1.16267 0.88215 0.97674 1.21530 0.98609 0.94561 0.91694 1.17460 0.95311 0.87662 0.93670 1.21206 1.02127 1.11409 1.21253 0.93939 1.25858 0.98327 0.96141 0.98889 1.70042 1.26758 1.19249 1.40906 0.85495 0.79098 0.77684 0.78689 1.20042 1.19751 1.19307 1.70578 1.22015 1.02716 1.31078 1.21607 1.05046 0.96684 0.80999 1.20229 1.03489 0.88954 1.01031 0.92041 0.90395 0.94143 0.87780 0.90304 0.78895 0.78622 0.77844 0.97830 0.95442 0.92438 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.08 -0.99 6.07 29.85 0.18 -0.80 16 3 C -0.05 -1.02 5.14 -19.83 -0.10 -1.12 16 4 C -0.14 -2.42 9.67 22.06 0.21 -2.21 16 5 C 0.05 1.14 10.95 83.21 0.91 2.05 16 6 N -0.37 -13.04 2.95 -352.16 -1.04 -14.07 16 7 C -0.12 -4.85 11.63 83.19 0.97 -3.88 16 8 C 0.07 3.47 6.27 41.58 0.26 3.73 16 9 C 0.10 5.69 5.53 29.10 0.16 5.85 16 10 C -0.52 -32.81 9.07 25.60 0.23 -32.58 16 11 H 0.04 2.74 7.74 -2.91 -0.02 2.71 16 12 C 0.01 0.34 5.46 84.65 0.46 0.81 16 13 N -0.93 -58.21 13.29 21.44 0.28 -57.92 16 14 Si 0.97 47.36 29.54 68.60 2.03 49.39 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 N -0.54 -28.08 11.28 -182.40 -2.06 -30.14 16 19 C 0.20 8.21 7.81 134.10 1.05 9.26 16 20 C -0.12 -3.59 9.75 22.41 0.22 -3.37 16 21 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 23 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.10 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 27 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.20 6.76 8.06 -2.91 -0.02 6.74 16 29 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -80.08 280.75 5.58 -74.50 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.10 Total: 1.66 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 5.27 Total: -23.41 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -2.81 Total: -102.14 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -80.08 5.58 -74.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.418 kcal (2) G-P(sol) polarization free energy of solvation -80.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds