Wall clock time and date at job start Mon Mar 30 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34337 * 125.06366 * 2 1 4 4 C 1.46327 * 106.99127 * 179.75939 * 3 2 1 5 5 C 1.40554 * 106.12491 * 0.35578 * 4 3 2 6 6 C 1.39178 * 119.48539 * 179.83848 * 5 4 3 7 7 C 1.37902 * 120.11867 * 359.74941 * 6 5 4 8 8 C 1.38554 * 120.77357 * 359.97438 * 7 6 5 9 9 C 1.38660 * 120.26899 * 0.02562 * 8 7 6 10 10 N 1.38958 * 120.26327 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00136 * 269.99507 * 10 9 8 12 12 C 1.36830 * 120.00224 * 90.00192 * 10 9 8 13 13 H 1.08003 * 119.99387 * 343.09211 * 12 10 9 14 14 C 1.38726 * 120.00439 * 163.37232 * 12 10 9 15 15 N 1.31635 * 119.99718 * 344.05998 * 14 12 10 16 16 Si 1.86797 * 120.00300 * 164.05898 * 14 12 10 17 17 H 1.48504 * 109.47084 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46978 * 119.99822 * 16 14 12 19 19 H 1.48500 * 109.47538 * 239.99784 * 16 14 12 20 20 N 1.36858 * 125.05995 * 179.97438 * 2 1 3 21 21 H 0.97000 * 125.07220 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47522 * 270.00016 * 1 2 3 23 23 H 1.08999 * 109.47021 * 29.99905 * 1 2 3 24 24 H 1.09004 * 109.47534 * 149.99792 * 1 2 3 25 25 H 1.07998 * 126.50270 * 359.94305 * 3 2 1 26 26 H 1.07999 * 119.93767 * 179.72125 * 6 5 4 27 27 H 1.08002 * 119.61502 * 180.02562 * 7 6 5 28 28 H 1.08001 * 119.86240 * 179.97438 * 8 7 6 29 29 H 1.08993 * 109.47162 * 265.18434 * 11 10 9 30 30 H 1.09002 * 109.46703 * 25.18455 * 11 10 9 31 31 H 1.09008 * 109.46858 * 145.18052 * 11 10 9 32 32 H 0.96998 * 119.99808 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2788 1.0996 0.0000 4 6 3.6698 0.6456 0.0059 5 6 3.6221 -0.7591 0.0007 6 6 4.8096 -1.4849 0.0011 7 6 6.0221 -0.8279 0.0014 8 6 6.0783 0.5565 0.0006 9 6 4.9101 1.3034 0.0002 10 7 4.9666 2.6918 0.0000 11 6 4.9959 3.4239 1.2686 12 6 4.9947 3.3753 -1.1850 13 1 5.2462 2.8594 -2.1000 14 6 4.7058 4.7319 -1.2104 15 7 4.1081 5.2969 -0.1827 16 14 5.1651 5.7569 -2.7030 17 1 5.8216 4.8909 -3.7152 18 1 3.9391 6.3579 -3.2870 19 1 6.0990 6.8365 -2.2939 20 7 2.2932 -1.1203 0.0005 21 1 1.9635 -2.0325 0.0006 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.9373 2.1241 -0.0009 26 1 4.7815 -2.5645 0.0017 27 1 6.9387 -1.3992 0.0013 28 1 7.0360 1.0558 0.0013 29 1 3.9831 3.7218 1.5397 30 1 5.4072 2.7830 2.0485 31 1 5.6194 4.3116 1.1615 32 1 3.9058 6.2454 -0.2006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:55 Heat of formation + Delta-G solvation = 82.132006 kcal Electronic energy + Delta-G solvation = -15675.766050 eV Core-core repulsion = 13216.496790 eV Total energy + Delta-G solvation = -2459.269260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57194 -36.95431 -34.86213 -31.68630 -30.79061 -29.89503 -27.94297 -26.16169 -25.77050 -23.00698 -21.04118 -20.26216 -19.62174 -17.31263 -16.25040 -15.54100 -14.81498 -14.43924 -14.26035 -13.73934 -13.55439 -13.07624 -12.69154 -12.48184 -12.13136 -11.94815 -11.78464 -11.10747 -11.00380 -10.77235 -10.68413 -10.54516 -10.31100 -9.99843 -9.80512 -8.77827 -8.52508 -7.47662 -6.93472 -6.79894 -5.71372 -3.15052 1.83696 2.37564 3.32533 3.40886 3.48049 3.51288 3.60648 4.51395 4.69558 5.17882 5.32015 5.45099 5.46567 5.55976 5.69690 5.79117 5.96341 6.04866 6.13264 6.30576 6.42765 6.65560 6.83113 6.89030 7.16996 7.33983 7.34509 7.45949 7.67470 7.79870 7.84255 7.91107 8.09936 8.48476 9.25651 9.97334 10.35142 11.34377 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.009120 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.031194 B = 3069.356372 C = 3666.543917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 C -0.155 4.155 4 C -0.121 4.121 5 C 0.100 3.900 6 C -0.170 4.170 7 C -0.087 4.087 8 C -0.182 4.182 9 C 0.268 3.732 10 N -0.570 5.570 11 C 0.169 3.831 12 C -0.246 4.246 13 H 0.072 0.928 14 C 0.002 3.998 15 N -0.907 5.907 16 Si 0.906 3.094 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.289 1.289 20 N -0.602 5.602 21 H 0.404 0.596 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.145 0.855 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.031 0.969 30 H -0.001 1.001 31 H 0.053 0.947 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -11.539 1.658 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.180 4.180 4 C -0.128 4.128 5 C -0.007 4.007 6 C -0.191 4.191 7 C -0.107 4.107 8 C -0.203 4.203 9 C 0.173 3.827 10 N -0.289 5.289 11 C 0.026 3.974 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.195 4.195 15 N -0.552 5.552 16 Si 0.736 3.264 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.215 1.215 20 N -0.208 5.208 21 H 0.239 0.761 22 H 0.087 0.913 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.162 0.838 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.017 0.983 31 H 0.072 0.928 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.504 -11.378 1.689 12.025 hybrid contribution 0.000 0.186 -0.823 0.844 sum -3.504 -11.192 0.865 11.760 Atomic orbital electron populations 1.20330 0.88508 1.02933 1.02312 1.20181 0.92889 0.86100 1.07750 1.21554 0.90767 0.97557 1.08150 1.20119 0.94691 0.91257 1.06738 1.18223 0.84151 0.94256 1.04112 1.19712 0.89861 0.97786 1.11731 1.20560 0.95936 0.94215 1.00001 1.21470 0.98539 0.93147 1.07184 1.17265 0.89201 0.86317 0.89947 1.41382 1.85617 0.97826 1.04118 1.20848 0.99959 0.93481 0.83120 1.19179 1.40603 0.91271 0.86370 0.90992 1.24877 0.99248 0.97684 0.97726 1.70145 1.43368 1.11050 1.30641 0.86157 0.77806 0.80272 0.82191 1.20293 1.21770 1.21543 1.41583 1.04109 1.07351 1.67715 0.76083 0.91289 0.90086 0.92203 0.83753 0.87597 0.86797 0.86505 0.95054 0.98266 0.92840 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.39 36.01 0.37 -0.63 16 2 C 0.04 0.60 7.09 -81.73 -0.58 0.03 16 3 C -0.16 -3.28 10.95 -37.71 -0.41 -3.69 16 4 C -0.12 -2.71 6.30 -104.96 -0.66 -3.37 16 5 C 0.10 1.88 7.27 -84.00 -0.61 1.27 16 6 C -0.17 -2.87 10.07 -39.36 -0.40 -3.26 16 7 C -0.09 -1.51 10.00 -39.59 -0.40 -1.91 16 8 C -0.18 -3.77 9.96 -39.31 -0.39 -4.16 16 9 C 0.27 6.39 5.03 -83.67 -0.42 5.96 16 10 N -0.57 -15.16 2.94 -120.35 -0.35 -15.51 16 11 C 0.17 4.37 8.96 59.85 0.54 4.90 16 12 C -0.25 -7.00 9.67 -15.14 -0.15 -7.15 16 13 H 0.07 2.06 7.88 -52.48 -0.41 1.65 16 14 C 0.00 0.07 5.06 -17.46 -0.09 -0.02 16 15 N -0.91 -26.40 10.51 55.49 0.58 -25.82 16 16 Si 0.91 22.18 29.58 -169.99 -5.03 17.15 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 N -0.60 -9.49 6.07 -6.94 -0.04 -9.53 16 21 H 0.40 4.77 8.96 -40.82 -0.37 4.41 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.14 3.29 8.06 -52.49 -0.42 2.87 16 26 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.03 0.86 7.51 -51.93 -0.39 0.47 16 30 H 0.00 -0.03 8.01 -51.93 -0.42 -0.45 16 31 H 0.05 1.45 6.95 -51.92 -0.36 1.08 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -31.45 275.46 -7.92 -39.37 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.04 Total: 2.22 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.19 Total: -12.03 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.19 Total: -50.86 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.45 -7.92 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.503 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds