Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34337 * 125.06366 * 2 1 4 4 C 1.46327 * 106.99127 * 179.75939 * 3 2 1 5 5 C 1.40554 * 106.12491 * 0.35578 * 4 3 2 6 6 C 1.39178 * 119.48539 * 179.83848 * 5 4 3 7 7 C 1.37902 * 120.11867 * 359.74941 * 6 5 4 8 8 C 1.38554 * 120.77357 * 359.97438 * 7 6 5 9 9 C 1.38660 * 120.26899 * 0.02562 * 8 7 6 10 10 N 1.38958 * 120.26327 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00136 * 269.99507 * 10 9 8 12 12 C 1.36830 * 120.00224 * 90.00192 * 10 9 8 13 13 H 1.08003 * 119.99387 * 343.09211 * 12 10 9 14 14 C 1.38726 * 120.00439 * 163.37232 * 12 10 9 15 15 N 1.31635 * 119.99718 * 344.05998 * 14 12 10 16 16 Si 1.86797 * 120.00300 * 164.05898 * 14 12 10 17 17 H 1.48504 * 109.47084 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46978 * 119.99822 * 16 14 12 19 19 H 1.48500 * 109.47538 * 239.99784 * 16 14 12 20 20 N 1.36858 * 125.05995 * 179.97438 * 2 1 3 21 21 H 0.97000 * 125.07220 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47522 * 270.00016 * 1 2 3 23 23 H 1.08999 * 109.47021 * 29.99905 * 1 2 3 24 24 H 1.09004 * 109.47534 * 149.99792 * 1 2 3 25 25 H 1.07998 * 126.50270 * 359.94305 * 3 2 1 26 26 H 1.07999 * 119.93767 * 179.72125 * 6 5 4 27 27 H 1.08002 * 119.61502 * 180.02562 * 7 6 5 28 28 H 1.08001 * 119.86240 * 179.97438 * 8 7 6 29 29 H 1.08993 * 109.47162 * 265.18434 * 11 10 9 30 30 H 1.09002 * 109.46703 * 25.18455 * 11 10 9 31 31 H 1.09008 * 109.46858 * 145.18052 * 11 10 9 32 32 H 0.96998 * 119.99808 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2788 1.0996 0.0000 4 6 3.6698 0.6456 0.0059 5 6 3.6221 -0.7591 0.0007 6 6 4.8096 -1.4849 0.0011 7 6 6.0221 -0.8279 0.0014 8 6 6.0783 0.5565 0.0006 9 6 4.9101 1.3034 0.0002 10 7 4.9666 2.6918 0.0000 11 6 4.9959 3.4239 1.2686 12 6 4.9947 3.3753 -1.1850 13 1 5.2462 2.8594 -2.1000 14 6 4.7058 4.7319 -1.2104 15 7 4.1081 5.2969 -0.1827 16 14 5.1651 5.7569 -2.7030 17 1 5.8216 4.8909 -3.7152 18 1 3.9391 6.3579 -3.2870 19 1 6.0990 6.8365 -2.2939 20 7 2.2932 -1.1203 0.0005 21 1 1.9635 -2.0325 0.0006 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.9373 2.1241 -0.0009 26 1 4.7815 -2.5645 0.0017 27 1 6.9387 -1.3992 0.0013 28 1 7.0360 1.0558 0.0013 29 1 3.9831 3.7218 1.5397 30 1 5.4072 2.7830 2.0485 31 1 5.6194 4.3116 1.1615 32 1 3.9058 6.2454 -0.2006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = 63.119931 kcal Electronic energy + Delta-G solvation = -15676.590476 eV Core-core repulsion = 13216.496790 eV Total energy + Delta-G solvation = -2460.093685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01900 -38.62207 -36.60862 -33.55211 -32.18688 -31.44651 -29.52898 -28.01352 -27.45813 -24.87491 -22.59157 -21.82570 -21.05984 -19.15817 -18.10295 -16.99822 -16.64189 -16.02302 -15.64112 -15.36627 -15.21199 -14.99258 -14.10467 -13.81782 -13.63551 -13.39333 -13.18737 -12.99729 -12.93211 -12.59550 -12.33005 -12.15965 -12.10067 -11.92670 -11.70867 -10.70912 -10.28595 -9.01160 -8.92345 -8.31587 -7.86309 -5.33108 0.35560 0.84883 1.44261 1.45053 1.56836 1.86613 2.30122 2.49132 3.12478 3.27991 3.62224 3.95646 4.20847 4.40862 4.43446 4.55030 4.62288 4.71688 4.78125 4.82026 5.04699 5.11453 5.19740 5.21235 5.37500 5.54492 5.63516 5.70306 5.88113 5.89623 6.16865 6.25776 6.45387 6.89610 7.11048 7.92151 8.29371 9.18347 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.009120 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.031194 B = 3069.356372 C = 3666.543917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.079 3.921 3 C -0.224 4.224 4 C -0.152 4.152 5 C 0.090 3.910 6 C -0.146 4.146 7 C -0.087 4.087 8 C -0.184 4.184 9 C 0.207 3.793 10 N -0.580 5.580 11 C 0.188 3.812 12 C -0.257 4.257 13 H 0.063 0.937 14 C -0.049 4.049 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.285 1.285 20 N -0.581 5.581 21 H 0.429 0.571 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.112 0.888 29 H 0.003 0.997 30 H 0.019 0.981 31 H 0.032 0.968 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -14.901 1.089 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 C -0.249 4.249 4 C -0.159 4.159 5 C -0.018 4.018 6 C -0.167 4.167 7 C -0.107 4.107 8 C -0.206 4.206 9 C 0.114 3.886 10 N -0.300 5.300 11 C 0.044 3.956 12 C -0.386 4.386 13 H 0.080 0.920 14 C -0.244 4.244 15 N -0.582 5.582 16 Si 0.800 3.200 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.211 1.211 20 N -0.188 5.188 21 H 0.269 0.731 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.130 0.870 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.886 -14.812 1.119 15.354 hybrid contribution 0.051 1.059 -0.612 1.224 sum -3.834 -13.753 0.506 14.287 Atomic orbital electron populations 1.20517 0.84689 1.04624 1.04162 1.20680 0.94842 0.84950 1.02412 1.21372 0.91798 0.97468 1.14291 1.20298 0.94510 0.93549 1.07554 1.18424 0.86032 0.92870 1.04442 1.20241 0.88496 0.99998 1.07915 1.20953 0.98116 0.92681 0.98936 1.21546 0.97196 0.94961 1.06874 1.17647 0.91036 0.85193 0.94762 1.41402 1.85800 0.99424 1.03335 1.20523 0.97870 0.93141 0.84066 1.19346 1.40342 0.91936 0.86962 0.91956 1.25662 0.99442 0.98569 1.00721 1.70302 1.44433 1.10991 1.32507 0.85128 0.77354 0.78513 0.78988 1.19482 1.21648 1.21093 1.41521 1.02913 1.08351 1.66005 0.73076 0.89190 0.90232 0.88665 0.87527 0.82842 0.82572 0.87037 0.97867 0.96244 0.94927 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.39 71.24 0.74 -0.99 16 2 C 0.08 2.53 7.09 40.88 0.29 2.82 16 3 C -0.22 -9.88 10.95 23.48 0.26 -9.62 16 4 C -0.15 -6.97 6.30 -20.09 -0.13 -7.10 16 5 C 0.09 3.19 7.27 39.01 0.28 3.47 16 6 C -0.15 -4.31 10.07 22.42 0.23 -4.09 16 7 C -0.09 -2.76 10.00 22.27 0.22 -2.53 16 8 C -0.18 -7.64 9.96 22.45 0.22 -7.42 16 9 C 0.21 10.24 5.03 38.64 0.19 10.44 16 10 N -0.58 -32.63 2.94 -534.69 -1.57 -34.20 16 11 C 0.19 10.35 8.96 127.77 1.15 11.49 16 12 C -0.26 -15.37 9.67 84.03 0.81 -14.56 16 13 H 0.06 3.74 7.88 -2.91 -0.02 3.72 16 14 C -0.05 -2.90 5.06 84.84 0.43 -2.47 16 15 N -0.94 -57.36 10.51 21.64 0.23 -57.14 16 16 Si 0.97 47.13 29.58 68.60 2.03 49.16 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 N -0.58 -16.33 6.07 -175.86 -1.07 -17.40 16 21 H 0.43 7.91 8.96 -92.71 -0.83 7.08 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.11 5.37 8.06 -2.91 -0.02 5.35 16 26 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 27 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 30 H 0.02 0.94 8.01 -2.39 -0.02 0.93 16 31 H 0.03 1.87 6.95 -2.38 -0.02 1.85 16 32 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -73.68 275.46 4.61 -69.07 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.29 Total: 11.06 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.70 Total: -20.56 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -2.41 Total: -108.73 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -73.68 4.61 -69.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.194 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds