Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47079 * 2 1 4 4 C 1.40149 * 120.15183 * 269.97375 * 3 2 1 5 5 C 1.35341 * 120.12895 * 180.02562 * 4 3 2 6 6 N 1.36240 * 120.57569 * 0.02562 * 5 4 3 7 7 C 1.38476 * 132.44502 * 179.97438 * 6 5 4 8 8 C 1.39826 * 126.89988 * 359.97438 * 7 6 5 9 9 H 1.07997 * 119.99769 * 146.75029 * 8 7 6 10 10 C 1.39873 * 119.99637 * 326.75842 * 8 7 6 11 11 N 1.31029 * 120.00146 * 339.61934 * 10 8 7 12 12 Si 1.86800 * 119.99974 * 159.62531 * 10 8 7 13 13 H 1.48497 * 109.47343 * 89.99459 * 12 10 8 14 14 H 1.48497 * 109.46981 * 209.99546 * 12 10 8 15 15 H 1.48498 * 109.47190 * 329.99237 * 12 10 8 16 16 C 1.40087 * 106.20690 * 180.02562 * 7 6 5 17 17 C 1.50697 * 125.94433 * 180.02562 * 16 7 6 18 18 N 1.32033 * 108.11123 * 359.97438 * 16 7 6 19 19 C 1.33395 * 110.02075 * 359.97438 * 18 16 7 20 20 C 1.36578 * 120.15255 * 89.99960 * 3 2 1 21 21 H 1.08997 * 109.47456 * 300.00279 * 1 2 3 22 22 H 1.09010 * 109.47029 * 60.00030 * 1 2 3 23 23 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47523 * 240.00251 * 2 1 3 25 25 H 1.09002 * 109.47300 * 119.99815 * 2 1 3 26 26 H 1.07996 * 119.93496 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.71202 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00267 * 177.29539 * 11 10 8 29 29 H 1.09001 * 109.47854 * 84.78784 * 17 16 7 30 30 H 1.09001 * 109.47211 * 204.79488 * 17 16 7 31 31 H 1.09006 * 109.47178 * 324.78799 * 17 16 7 32 32 H 1.08004 * 120.27415 * 359.69709 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2675 2.0844 -1.2119 5 6 2.7191 3.3602 -1.2113 6 7 2.9504 4.0130 -0.0381 7 6 3.4031 5.2902 0.2473 8 6 3.7550 6.2815 -0.6739 9 1 3.5794 7.3214 -0.4414 10 6 4.3341 5.9262 -1.8965 11 7 4.9097 4.7571 -2.0336 12 14 4.2872 7.1185 -3.3338 13 1 5.4925 7.9850 -3.2977 14 1 4.2632 6.3567 -4.6082 15 1 3.0684 7.9615 -3.2380 16 6 3.4388 5.3893 1.6442 17 6 3.8671 6.5988 2.4345 18 7 3.0309 4.2390 2.1479 19 6 2.7290 3.3909 1.1635 20 6 2.2610 2.0677 1.1810 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0879 1.5766 -2.1480 27 1 2.8984 3.8650 -2.1492 28 1 5.2766 4.4949 -2.8924 29 1 3.0220 7.2781 2.5461 30 1 4.2139 6.2854 3.4192 31 1 4.6756 7.1080 1.9098 32 1 2.0786 1.5668 2.1203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261164332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = 54.848320 kcal Electronic energy + Delta-G solvation = -15728.751616 eV Core-core repulsion = 13268.299246 eV Total energy + Delta-G solvation = -2460.452369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95641 -36.79677 -34.12003 -33.34157 -30.82306 -30.11530 -28.42236 -26.91654 -24.91107 -22.65590 -21.76793 -20.38206 -18.78838 -17.78480 -15.76338 -15.40067 -15.15864 -14.40650 -14.25070 -13.83791 -13.29147 -13.08249 -12.75503 -12.15504 -11.94462 -11.77674 -11.72110 -11.48065 -11.33562 -11.00472 -10.87801 -10.59784 -10.58027 -10.26726 -10.07778 -9.54139 -9.07006 -8.63271 -7.35008 -7.05899 -6.48496 -4.34719 2.00624 2.52617 2.96256 3.00380 3.06687 3.84583 4.00143 4.27402 4.78885 4.95155 5.22685 5.34441 5.69671 5.71624 5.81363 5.96611 6.04281 6.13735 6.23133 6.29430 6.39728 6.48519 6.64631 6.69279 6.81818 7.00098 7.01991 7.07832 7.25925 7.37941 7.64279 7.88227 8.24480 8.44001 8.63105 8.88903 9.47636 10.06144 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025144 B = 0.009854 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.312356 B = 2840.918135 C = 3751.047058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.115 4.115 4 C -0.196 4.196 5 C 0.130 3.870 6 N -0.375 5.375 7 C 0.179 3.821 8 C -0.450 4.450 9 H 0.097 0.903 10 C 0.068 3.932 11 N -0.811 5.811 12 Si 0.908 3.092 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.070 4.070 17 C -0.037 4.037 18 N -0.480 5.480 19 C 0.125 3.875 20 C -0.070 4.070 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.283 0.717 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -3.826 -1.767 5.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.120 4.120 4 C -0.218 4.218 5 C 0.007 3.993 6 N -0.053 5.053 7 C 0.067 3.933 8 C -0.486 4.486 9 H 0.114 0.886 10 C -0.148 4.148 11 N -0.439 5.439 12 Si 0.732 3.268 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.204 4.204 17 C -0.095 4.095 18 N -0.200 5.200 19 C -0.111 4.111 20 C -0.090 4.090 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.165 0.835 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.028 -4.100 -1.030 5.839 hybrid contribution 0.287 0.530 -1.785 1.884 sum -3.741 -3.570 -2.815 5.887 Atomic orbital electron populations 1.21748 0.95622 1.00640 1.02137 1.20288 0.95387 0.93060 1.01769 1.19207 1.04242 0.96080 0.92501 1.20216 1.09624 0.94297 0.97692 1.21517 0.95020 0.92869 0.89894 1.42624 1.43931 1.13135 1.05629 1.18603 0.98586 0.82707 0.93390 1.18391 1.36753 0.93760 0.99650 0.88553 1.25882 0.92582 0.96204 1.00108 1.69963 1.26616 1.21312 1.26052 0.86302 0.79951 0.80887 0.79684 1.19267 1.20115 1.18432 1.20968 1.13907 0.95238 0.90267 1.19645 0.99577 0.92842 0.97437 1.69656 1.18081 1.01884 1.30330 1.20020 1.13788 0.95897 0.81431 1.19629 1.01090 0.90721 0.97569 0.92725 0.92774 0.93226 0.91791 0.91844 0.85954 0.83500 0.90660 0.93491 0.93089 0.92050 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.07 -0.99 6.07 -27.88 -0.17 -1.16 16 3 C -0.12 -2.21 5.14 -104.50 -0.54 -2.75 16 4 C -0.20 -3.93 9.68 -39.90 -0.39 -4.32 16 5 C 0.13 3.04 9.28 -16.63 -0.15 2.89 16 6 N -0.38 -9.82 2.91 -60.03 -0.17 -10.00 16 7 C 0.18 4.84 6.26 -83.57 -0.52 4.32 16 8 C -0.45 -11.58 8.95 -38.38 -0.34 -11.93 16 9 H 0.10 2.35 7.92 -52.49 -0.42 1.93 16 10 C 0.07 1.65 4.50 -17.28 -0.08 1.57 16 11 N -0.81 -20.37 10.62 55.55 0.59 -19.78 16 12 Si 0.91 17.98 29.61 -169.99 -5.03 12.94 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 15 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 16 C -0.07 -1.82 7.20 -81.81 -0.59 -2.41 16 17 C -0.04 -0.79 10.21 36.00 0.37 -0.42 16 18 N -0.48 -12.82 11.23 -8.10 -0.09 -12.91 16 19 C 0.12 3.22 7.77 -155.51 -1.21 2.01 16 20 C -0.07 -1.51 9.75 -39.38 -0.38 -1.90 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.15 3.42 6.02 -52.48 -0.32 3.10 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 273.73 15.07 4.13 4.13 Total: -1.00 -29.21 273.73 -8.31 -37.52 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.09 Total: 3.68 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.64 Total: -15.58 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.32 Total: -42.68 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.21 -8.31 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.364 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds