Wall clock time and date at job start Mon Mar 30 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38242 * 126.04556 * 2 1 4 4 C 1.41128 * 134.82129 * 0.02562 * 3 2 1 5 5 C 1.35655 * 119.53667 * 180.02562 * 4 3 2 6 6 C 1.39685 * 121.72452 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.08632 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47061 * 90.00399 * 7 6 5 9 9 H 1.07992 * 120.00353 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99777 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00301 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99848 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47039 * 89.99890 * 12 10 8 14 14 H 1.48493 * 109.46776 * 210.00153 * 12 10 8 15 15 H 1.48502 * 109.46987 * 329.99836 * 12 10 8 16 16 C 1.35636 * 121.81843 * 359.97438 * 6 5 4 17 17 C 1.41151 * 119.59674 * 359.97438 * 16 6 5 18 18 N 1.32062 * 134.68275 * 179.97438 * 17 16 6 19 19 N 1.33984 * 126.04135 * 180.02562 * 2 1 3 20 20 C 1.46497 * 125.02582 * 359.96986 * 19 2 1 21 21 H 1.09001 * 109.47091 * 90.00486 * 1 2 3 22 22 H 1.08994 * 109.47702 * 210.00448 * 1 2 3 23 23 H 1.08997 * 109.47250 * 330.00752 * 1 2 3 24 24 H 1.07997 * 120.23063 * 0.02849 * 4 3 2 25 25 H 1.07995 * 119.13282 * 180.28182 * 5 4 3 26 26 H 1.09005 * 109.46769 * 209.99808 * 7 6 5 27 27 H 1.09000 * 109.47241 * 329.99590 * 7 6 5 28 28 H 0.96996 * 120.00347 * 179.97438 * 11 10 8 29 29 H 1.07993 * 120.20086 * 180.02562 * 16 6 5 30 30 H 1.08999 * 109.47431 * 90.00219 * 20 19 2 31 31 H 1.09010 * 109.47182 * 209.99704 * 20 19 2 32 32 H 1.08998 * 109.46910 * 329.99624 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1178 0.0000 4 6 2.0965 2.5111 0.0004 5 6 3.1556 3.3588 -0.0002 6 6 4.4715 2.8901 -0.0019 7 6 5.6035 3.8848 -0.0032 8 6 5.9826 4.2162 1.4172 9 1 5.4563 3.7531 2.2386 10 6 7.0016 5.1106 1.6679 11 7 7.6429 5.6741 0.6676 12 14 7.4711 5.5219 3.4286 13 1 8.5192 4.5787 3.8946 14 1 7.9923 6.9109 3.4902 15 1 6.2749 5.4029 4.3006 16 6 4.7584 1.5644 -0.0024 17 6 3.7063 0.6234 -0.0007 18 7 3.6401 -0.6956 -0.0010 19 7 2.2953 -1.0834 -0.0005 20 6 1.8200 -2.4691 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.0889 2.8999 0.0014 25 1 2.9767 4.4238 0.0047 26 1 6.4633 3.4561 -0.5181 27 1 5.2883 4.7933 -0.5166 28 1 8.3595 6.3036 0.8440 29 1 5.7855 1.2309 -0.0033 30 1 1.7017 -2.8127 -1.0281 31 1 2.5443 -3.1017 0.5130 32 1 0.8606 -2.5241 0.5138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:25 Heat of formation + Delta-G solvation = 59.835987 kcal Electronic energy + Delta-G solvation = -15072.903167 eV Core-core repulsion = 12612.667079 eV Total energy + Delta-G solvation = -2460.236088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22391 -38.70632 -35.31108 -34.16467 -33.39601 -31.43973 -29.89046 -27.73574 -27.37877 -25.08550 -23.14859 -21.95440 -20.29571 -18.50315 -17.92713 -17.42594 -16.69427 -16.66224 -15.74707 -15.23254 -14.85859 -14.53039 -14.04681 -13.98994 -13.85404 -13.54874 -13.23849 -13.21570 -12.80710 -12.63521 -12.42925 -12.35575 -12.16352 -11.56236 -11.40309 -11.06860 -10.90696 -10.59723 -9.27453 -8.43309 -8.18504 -6.32386 -0.20293 0.96147 1.39696 1.41530 1.51598 1.53894 1.56834 2.40992 3.02675 3.11238 3.29934 3.62134 4.05406 4.15667 4.24593 4.36089 4.40045 4.54337 4.63979 4.71234 4.79506 4.87801 4.99401 5.10218 5.23552 5.32840 5.41145 5.59696 5.67300 5.76489 6.01572 6.11966 6.12939 6.23110 6.74132 6.79577 7.35537 8.90510 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.005680 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.845519 B = 4928.675074 C = 5073.628389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.123 3.877 3 C -0.244 4.244 4 C -0.027 4.027 5 C -0.170 4.170 6 C -0.007 4.007 7 C 0.055 3.945 8 C -0.528 4.528 9 H 0.052 0.948 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.967 3.033 13 H -0.275 1.275 14 H -0.275 1.275 15 H -0.265 1.265 16 C -0.158 4.158 17 C 0.091 3.909 18 N -0.370 5.370 19 N -0.328 5.328 20 C 0.078 3.922 21 H 0.106 0.894 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.162 0.838 25 H 0.124 0.876 26 H -0.001 1.001 27 H 0.014 0.986 28 H 0.266 0.734 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.046 -13.335 -0.921 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.254 4.254 4 C -0.047 4.047 5 C -0.190 4.190 6 C -0.011 4.011 7 C 0.018 3.982 8 C -0.566 4.566 9 H 0.070 0.930 10 C -0.193 4.193 11 N -0.570 5.570 12 Si 0.791 3.209 13 H -0.200 1.200 14 H -0.200 1.200 15 H -0.189 1.189 16 C -0.180 4.180 17 C -0.060 4.060 18 N -0.199 5.199 19 N -0.103 5.103 20 C -0.060 4.060 21 H 0.124 0.876 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.180 0.820 25 H 0.142 0.858 26 H 0.017 0.983 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.247 -14.544 -0.966 23.354 hybrid contribution 0.945 1.097 0.602 1.569 sum -17.301 -13.446 -0.363 21.915 Atomic orbital electron populations 1.20769 0.82056 1.06212 1.05484 1.21932 0.96371 0.85434 0.97903 1.19736 0.91665 0.95281 1.18694 1.20496 0.99536 0.89359 0.95265 1.20596 0.91449 1.00400 1.06512 1.19902 0.96206 0.93593 0.91428 1.18190 0.91025 0.92427 0.96572 1.21325 1.17812 1.25251 0.92220 0.92984 1.25921 0.95843 0.95568 1.01919 1.70077 1.23740 1.30094 1.33048 0.85421 0.78652 0.77663 0.79172 1.20028 1.20007 1.18908 1.19499 0.96057 0.91244 1.11192 1.20978 0.95384 0.91265 0.98344 1.77598 0.95391 1.11904 1.34987 1.48847 1.03407 1.08363 1.49666 1.22485 1.02462 0.75452 1.05650 0.87612 0.87804 0.88129 0.82025 0.85770 0.98253 0.96780 0.92485 0.88412 0.88246 0.89003 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.09 71.24 0.72 -0.22 16 2 C 0.12 3.05 6.98 42.23 0.29 3.34 16 3 C -0.24 -8.47 6.26 -20.23 -0.13 -8.60 16 4 C -0.03 -0.88 10.09 22.38 0.23 -0.66 16 5 C -0.17 -7.00 9.51 22.02 0.21 -6.79 16 6 C -0.01 -0.35 5.03 -20.12 -0.10 -0.45 16 7 C 0.05 3.14 5.05 29.10 0.15 3.29 16 8 C -0.53 -31.82 9.09 25.60 0.23 -31.59 16 9 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 10 C 0.01 0.33 5.46 84.66 0.46 0.79 16 11 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 12 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 16 C -0.16 -7.72 9.65 22.38 0.22 -7.50 16 17 C 0.09 3.94 7.49 42.16 0.32 4.25 16 18 N -0.37 -14.56 12.54 -48.70 -0.61 -15.17 16 19 N -0.33 -8.85 3.95 -354.34 -1.40 -10.25 16 20 C 0.08 1.04 11.17 127.77 1.43 2.47 16 21 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.10 0.50 6.95 -2.39 -0.02 0.48 16 23 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 25 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 26 H 0.00 -0.05 8.06 -2.38 -0.02 -0.07 16 27 H 0.01 0.82 8.07 -2.39 -0.02 0.80 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.13 0.64 6.90 -2.39 -0.02 0.62 16 Total: -1.00 -80.36 279.27 5.43 -74.93 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.11 Total: 1.69 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 4.02 Total: -41.67 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.73 Total: -82.86 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -80.36 5.43 -74.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.768 kcal (2) G-P(sol) polarization free energy of solvation -80.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds