Wall clock time and date at job start Mon Mar 30 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00355 * 2 1 4 4 H 1.48506 * 109.47248 * 270.00183 * 3 2 1 5 5 H 1.48507 * 109.47118 * 29.99808 * 3 2 1 6 6 H 1.48505 * 109.47506 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38317 * 119.96275 * 269.98122 * 10 9 7 12 12 C 1.38264 * 120.14298 * 179.97438 * 11 10 9 13 13 C 1.38133 * 120.07498 * 359.72785 * 12 11 10 14 14 C 1.38873 * 119.92458 * 0.56576 * 13 12 11 15 15 N 1.39845 * 120.07456 * 179.70207 * 14 13 12 16 16 C 1.36437 * 125.84458 * 179.75356 * 15 14 13 17 17 N 1.28263 * 114.55081 * 179.72585 * 16 15 14 18 18 C 1.46966 * 110.20048 * 0.27630 * 17 16 15 19 19 C 1.47292 * 125.83766 * 359.94321 * 15 14 13 20 20 C 1.38087 * 119.96593 * 89.99824 * 10 9 7 21 21 H 0.96998 * 119.99884 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47186 * 60.00213 * 9 7 2 23 23 H 1.08996 * 109.47443 * 299.99883 * 9 7 2 24 24 H 1.07996 * 119.92489 * 359.97438 * 11 10 9 25 25 H 1.08003 * 119.95850 * 180.02562 * 12 11 10 26 26 H 1.07993 * 120.03521 * 180.27319 * 13 12 11 27 27 H 1.08002 * 122.72720 * 0.02562 * 16 15 14 28 28 H 1.08998 * 110.55134 * 118.58943 * 18 17 16 29 29 H 1.09003 * 110.54748 * 241.25600 * 18 17 16 30 30 H 1.08998 * 110.89785 * 61.73970 * 19 15 14 31 31 H 1.09002 * 110.65035 * 298.59155 * 19 15 14 32 32 H 1.08000 * 120.03290 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2301 -3.6447 0.0027 11 6 2.6787 -4.1711 -1.1951 12 6 3.5775 -5.2218 -1.1985 13 6 4.0347 -5.7454 -0.0049 14 6 3.5816 -5.2232 1.1995 15 7 4.0377 -5.7551 2.4098 16 6 3.6761 -5.3317 3.6553 17 7 4.2234 -5.9789 4.6180 18 6 5.1157 -7.0192 4.0875 19 6 4.9938 -6.8658 2.5578 20 6 2.6783 -4.1679 1.1995 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.3261 -3.7606 -2.1297 25 1 3.9261 -5.6303 -2.1356 26 1 4.7401 -6.5632 -0.0083 27 1 2.9815 -4.5208 3.8176 28 1 6.1422 -6.8432 4.4090 29 1 4.7813 -8.0075 4.4029 30 1 5.9579 -6.6101 2.1183 31 1 4.5970 -7.7768 2.1098 32 1 2.3271 -3.7568 2.1344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261178657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:41 Heat of formation + Delta-G solvation = 35.928158 kcal Electronic energy + Delta-G solvation = -15058.998996 eV Core-core repulsion = 12597.726187 eV Total energy + Delta-G solvation = -2461.272809 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.60872 -39.62460 -35.64711 -34.37268 -32.85656 -31.24051 -29.85283 -28.80736 -25.36817 -24.24074 -23.53702 -21.43747 -21.14139 -18.70241 -18.39284 -17.03312 -16.89242 -16.53706 -16.21837 -15.17092 -14.86006 -14.59316 -14.29920 -14.12562 -13.96077 -13.41772 -13.22785 -13.07531 -12.90186 -12.60622 -12.50410 -12.34779 -12.09483 -11.53409 -11.34985 -11.03028 -10.59793 -10.30227 -9.53320 -8.41323 -8.19219 -6.32493 0.44068 0.61136 1.40757 1.41315 1.52607 1.59253 1.92793 2.40567 3.05049 3.11689 3.45002 3.64932 3.94655 4.11453 4.12007 4.36607 4.39576 4.47601 4.64050 4.67778 4.76304 4.89659 4.94915 5.12200 5.23125 5.33944 5.39527 5.63133 5.70852 5.77763 6.01167 6.10618 6.19534 6.54160 6.79938 6.81631 7.36077 8.89739 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.006273 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.474839 B = 4462.309901 C = 4977.657009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.055 3.945 10 C -0.026 4.026 11 C -0.170 4.170 12 C -0.074 4.074 13 C -0.182 4.182 14 C 0.188 3.812 15 N -0.582 5.582 16 C 0.340 3.660 17 N -0.592 5.592 18 C 0.017 3.983 19 C 0.070 3.930 20 C -0.183 4.183 21 H 0.265 0.735 22 H 0.007 0.993 23 H 0.004 0.996 24 H 0.115 0.885 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.193 0.807 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -13.670 1.745 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.027 4.027 11 C -0.190 4.190 12 C -0.092 4.092 13 C -0.203 4.203 14 C 0.092 3.908 15 N -0.293 5.293 16 C 0.043 3.957 17 N -0.315 5.315 18 C -0.112 4.112 19 C -0.052 4.052 20 C -0.205 4.205 21 H 0.074 0.926 22 H 0.025 0.975 23 H 0.022 0.978 24 H 0.133 0.867 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.209 0.791 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.271 -13.725 2.771 17.365 hybrid contribution -0.080 1.122 -0.763 1.359 sum 10.191 -12.603 2.008 16.331 Atomic orbital electron populations 1.70072 1.07623 1.27935 1.51316 1.25883 0.95716 1.02970 0.94617 0.85477 0.78578 0.78609 0.78589 1.19609 1.20553 1.19178 1.21343 0.93041 0.91158 1.50913 0.92783 1.18124 0.92929 0.91087 0.96039 1.20173 0.95444 0.93892 0.93204 1.21098 1.01392 0.99204 0.97295 1.21177 0.94919 0.94518 0.98604 1.20806 1.05194 1.04216 0.90087 1.17576 0.94650 0.93523 0.85036 1.45922 1.44866 1.34963 1.03523 1.25004 0.94106 0.95808 0.80796 1.74264 1.16641 1.12510 1.28103 1.23309 0.99459 0.97790 0.90669 1.22964 0.93603 0.89886 0.98765 1.20564 1.02409 0.99124 0.98366 0.92566 0.97507 0.97767 0.86700 0.82775 0.83435 0.79066 0.88286 0.88069 0.88894 0.88613 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.53 -29.80 9.09 25.60 0.23 -29.56 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.06 2.92 5.10 29.10 0.15 3.06 16 10 C -0.03 -1.14 5.07 -19.88 -0.10 -1.24 16 11 C -0.17 -6.31 9.70 22.29 0.22 -6.09 16 12 C -0.07 -2.10 10.04 22.25 0.22 -1.87 16 13 C -0.18 -4.87 9.50 22.40 0.21 -4.66 16 14 C 0.19 5.87 6.64 38.18 0.25 6.12 16 15 N -0.58 -15.56 3.23 -517.06 -1.67 -17.24 16 16 C 0.34 9.43 11.59 180.45 2.09 11.52 16 17 N -0.59 -16.29 11.60 -349.14 -4.05 -20.34 16 18 C 0.02 0.33 8.05 86.70 0.70 1.03 16 19 C 0.07 1.34 6.58 86.64 0.57 1.91 16 20 C -0.18 -6.97 9.10 22.40 0.20 -6.77 16 21 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 22 H 0.01 0.37 8.09 -2.38 -0.02 0.35 16 23 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 24 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 25 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 26 H 0.15 2.91 7.32 -2.91 -0.02 2.89 16 27 H 0.19 5.05 6.79 -2.91 -0.02 5.03 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 4.33 6.60 -2.91 -0.02 4.32 16 Total: -1.00 -65.99 276.53 2.91 -63.08 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.10 Total: 9.48 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 5.21 Total: -25.72 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -5.44 Total: -92.93 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.99 2.91 -63.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261178657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.009 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds