Wall clock time and date at job start Mon Mar 30 2020 03:02:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86791 * 120.00355 * 2 1
4 4 H 1.48506 * 109.47248 * 270.00183 * 3 2 1
5 5 H 1.48507 * 109.47118 * 29.99808 * 3 2 1
6 6 H 1.48505 * 109.47506 * 150.00125 * 3 2 1
7 7 C 1.37882 * 119.99548 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99723 * 180.02562 * 7 2 1
9 9 C 1.50693 * 120.00134 * 359.97438 * 7 2 1
10 10 C 1.50701 * 109.47294 * 180.02562 * 9 7 2
11 11 C 1.38317 * 119.96275 * 269.98122 * 10 9 7
12 12 C 1.38264 * 120.14298 * 179.97438 * 11 10 9
13 13 C 1.38133 * 120.07498 * 359.72785 * 12 11 10
14 14 C 1.38873 * 119.92458 * 0.56576 * 13 12 11
15 15 N 1.39845 * 120.07456 * 179.70207 * 14 13 12
16 16 C 1.36437 * 125.84458 * 179.75356 * 15 14 13
17 17 N 1.28263 * 114.55081 * 179.72585 * 16 15 14
18 18 C 1.46966 * 110.20048 * 0.27630 * 17 16 15
19 19 C 1.47292 * 125.83766 * 359.94321 * 15 14 13
20 20 C 1.38087 * 119.96593 * 89.99824 * 10 9 7
21 21 H 0.96998 * 119.99884 * 359.97438 * 1 2 3
22 22 H 1.09007 * 109.47186 * 60.00213 * 9 7 2
23 23 H 1.08996 * 109.47443 * 299.99883 * 9 7 2
24 24 H 1.07996 * 119.92489 * 359.97438 * 11 10 9
25 25 H 1.08003 * 119.95850 * 180.02562 * 12 11 10
26 26 H 1.07993 * 120.03521 * 180.27319 * 13 12 11
27 27 H 1.08002 * 122.72720 * 0.02562 * 16 15 14
28 28 H 1.08998 * 110.55134 * 118.58943 * 18 17 16
29 29 H 1.09003 * 110.54748 * 241.25600 * 18 17 16
30 30 H 1.08998 * 110.89785 * 61.73970 * 19 15 14
31 31 H 1.09002 * 110.65035 * 298.59155 * 19 15 14
32 32 H 1.08000 * 120.03290 * 0.02562 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6526 0.7000
6 1 3.5468 1.4400 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4991 0.0017
10 6 2.2301 -3.6447 0.0027
11 6 2.6787 -4.1711 -1.1951
12 6 3.5775 -5.2218 -1.1985
13 6 4.0347 -5.7454 -0.0049
14 6 3.5816 -5.2232 1.1995
15 7 4.0377 -5.7551 2.4098
16 6 3.6761 -5.3317 3.6553
17 7 4.2234 -5.9789 4.6180
18 6 5.1157 -7.0192 4.0875
19 6 4.9938 -6.8658 2.5578
20 6 2.6783 -4.1679 1.1995
21 1 -0.4850 0.8400 0.0004
22 1 0.6239 -2.5575 -0.8881
23 1 0.6246 -2.5563 0.8919
24 1 2.3261 -3.7606 -2.1297
25 1 3.9261 -5.6303 -2.1356
26 1 4.7401 -6.5632 -0.0083
27 1 2.9815 -4.5208 3.8176
28 1 6.1422 -6.8432 4.4090
29 1 4.7813 -8.0075 4.4029
30 1 5.9579 -6.6101 2.1183
31 1 4.5970 -7.7768 2.1098
32 1 2.3271 -3.7568 2.1344
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261178657.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:41
Heat of formation + Delta-G solvation = 35.928158 kcal
Electronic energy + Delta-G solvation = -15058.998996 eV
Core-core repulsion = 12597.726187 eV
Total energy + Delta-G solvation = -2461.272809 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.60872 -39.62460 -35.64711 -34.37268 -32.85656 -31.24051 -29.85283 -28.80736
-25.36817 -24.24074 -23.53702 -21.43747 -21.14139 -18.70241 -18.39284 -17.03312
-16.89242 -16.53706 -16.21837 -15.17092 -14.86006 -14.59316 -14.29920 -14.12562
-13.96077 -13.41772 -13.22785 -13.07531 -12.90186 -12.60622 -12.50410 -12.34779
-12.09483 -11.53409 -11.34985 -11.03028 -10.59793 -10.30227 -9.53320 -8.41323
-8.19219 -6.32493 0.44068 0.61136 1.40757 1.41315 1.52607 1.59253
1.92793 2.40567 3.05049 3.11689 3.45002 3.64932 3.94655 4.11453
4.12007 4.36607 4.39576 4.47601 4.64050 4.67778 4.76304 4.89659
4.94915 5.12200 5.23125 5.33944 5.39527 5.63133 5.70852 5.77763
6.01167 6.10618 6.19534 6.54160 6.79938 6.81631 7.36077 8.89739
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.030020 B = 0.006273 C = 0.005624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 932.474839 B = 4462.309901 C = 4977.657009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.006 3.994
3 Si 0.963 3.037
4 H -0.271 1.271
5 H -0.280 1.280
6 H -0.267 1.267
7 C -0.527 4.527
8 H 0.054 0.946
9 C 0.055 3.945
10 C -0.026 4.026
11 C -0.170 4.170
12 C -0.074 4.074
13 C -0.182 4.182
14 C 0.188 3.812
15 N -0.582 5.582
16 C 0.340 3.660
17 N -0.592 5.592
18 C 0.017 3.983
19 C 0.070 3.930
20 C -0.183 4.183
21 H 0.265 0.735
22 H 0.007 0.993
23 H 0.004 0.996
24 H 0.115 0.885
25 H 0.155 0.845
26 H 0.148 0.852
27 H 0.193 0.807
28 H 0.099 0.901
29 H 0.101 0.899
30 H 0.093 0.907
31 H 0.096 0.904
32 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.289 -13.670 1.745 17.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.192 4.192
3 Si 0.787 3.213
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.192 1.192
7 C -0.565 4.565
8 H 0.072 0.928
9 C 0.018 3.982
10 C -0.027 4.027
11 C -0.190 4.190
12 C -0.092 4.092
13 C -0.203 4.203
14 C 0.092 3.908
15 N -0.293 5.293
16 C 0.043 3.957
17 N -0.315 5.315
18 C -0.112 4.112
19 C -0.052 4.052
20 C -0.205 4.205
21 H 0.074 0.926
22 H 0.025 0.975
23 H 0.022 0.978
24 H 0.133 0.867
25 H 0.172 0.828
26 H 0.166 0.834
27 H 0.209 0.791
28 H 0.117 0.883
29 H 0.119 0.881
30 H 0.111 0.889
31 H 0.114 0.886
32 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 10.271 -13.725 2.771 17.365
hybrid contribution -0.080 1.122 -0.763 1.359
sum 10.191 -12.603 2.008 16.331
Atomic orbital electron populations
1.70072 1.07623 1.27935 1.51316 1.25883 0.95716 1.02970 0.94617
0.85477 0.78578 0.78609 0.78589 1.19609 1.20553 1.19178 1.21343
0.93041 0.91158 1.50913 0.92783 1.18124 0.92929 0.91087 0.96039
1.20173 0.95444 0.93892 0.93204 1.21098 1.01392 0.99204 0.97295
1.21177 0.94919 0.94518 0.98604 1.20806 1.05194 1.04216 0.90087
1.17576 0.94650 0.93523 0.85036 1.45922 1.44866 1.34963 1.03523
1.25004 0.94106 0.95808 0.80796 1.74264 1.16641 1.12510 1.28103
1.23309 0.99459 0.97790 0.90669 1.22964 0.93603 0.89886 0.98765
1.20564 1.02409 0.99124 0.98366 0.92566 0.97507 0.97767 0.86700
0.82775 0.83435 0.79066 0.88286 0.88069 0.88894 0.88613 0.86758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16
2 C 0.01 0.36 5.46 84.66 0.46 0.83 16
3 Si 0.96 44.06 29.54 68.60 2.03 46.09 16
4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16
7 C -0.53 -29.80 9.09 25.60 0.23 -29.56 16
8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16
9 C 0.06 2.92 5.10 29.10 0.15 3.06 16
10 C -0.03 -1.14 5.07 -19.88 -0.10 -1.24 16
11 C -0.17 -6.31 9.70 22.29 0.22 -6.09 16
12 C -0.07 -2.10 10.04 22.25 0.22 -1.87 16
13 C -0.18 -4.87 9.50 22.40 0.21 -4.66 16
14 C 0.19 5.87 6.64 38.18 0.25 6.12 16
15 N -0.58 -15.56 3.23 -517.06 -1.67 -17.24 16
16 C 0.34 9.43 11.59 180.45 2.09 11.52 16
17 N -0.59 -16.29 11.60 -349.14 -4.05 -20.34 16
18 C 0.02 0.33 8.05 86.70 0.70 1.03 16
19 C 0.07 1.34 6.58 86.64 0.57 1.91 16
20 C -0.18 -6.97 9.10 22.40 0.20 -6.77 16
21 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16
22 H 0.01 0.37 8.09 -2.38 -0.02 0.35 16
23 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16
24 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16
25 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16
26 H 0.15 2.91 7.32 -2.91 -0.02 2.89 16
27 H 0.19 5.05 6.79 -2.91 -0.02 5.03 16
28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16
29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16
30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
32 H 0.11 4.33 6.60 -2.91 -0.02 4.32 16
Total: -1.00 -65.99 276.53 2.91 -63.08
By element:
Atomic # 1 Polarization: 8.38 SS G_CDS: 1.10 Total: 9.48 kcal
Atomic # 6 Polarization: -30.93 SS G_CDS: 5.21 Total: -25.72 kcal
Atomic # 7 Polarization: -87.50 SS G_CDS: -5.44 Total: -92.93 kcal
Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal
Total: -65.99 2.91 -63.08 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261178657.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.009 kcal
(2) G-P(sol) polarization free energy of solvation -65.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds