Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38243 * 126.05251 * 2 1 4 4 C 1.41127 * 134.81448 * 0.03538 * 3 2 1 5 5 C 1.35650 * 119.53464 * 180.09055 * 4 3 2 6 6 C 1.50705 * 119.13559 * 179.97438 * 5 4 3 7 7 C 1.39684 * 121.72828 * 359.88310 * 5 4 3 8 8 C 1.35635 * 121.81510 * 0.08134 * 7 5 4 9 9 C 1.41153 * 119.59475 * 359.97438 * 8 7 5 10 10 N 1.32069 * 134.67996 * 180.32598 * 9 8 7 11 11 N 1.33992 * 126.03802 * 180.02562 * 2 1 3 12 12 C 1.46491 * 125.02764 * 359.96318 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99932 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.09001 * 109.47101 * 269.98745 * 1 2 3 22 22 H 1.09005 * 109.46947 * 29.97924 * 1 2 3 23 23 H 1.09000 * 109.47473 * 149.98215 * 1 2 3 24 24 H 1.08000 * 120.23270 * 359.97438 * 4 3 2 25 25 H 1.08997 * 109.46840 * 269.93823 * 6 5 4 26 26 H 1.09001 * 109.46871 * 29.93908 * 6 5 4 27 27 H 1.08999 * 109.47223 * 149.93922 * 6 5 4 28 28 H 1.07999 * 119.09278 * 180.02562 * 7 5 4 29 29 H 1.07997 * 120.20295 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47166 * 330.00198 * 12 11 2 31 31 H 1.08994 * 109.47507 * 209.99904 * 12 11 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3206 1.1177 0.0000 4 6 2.0966 2.5110 0.0006 5 6 3.1557 3.3586 -0.0015 6 6 2.9061 4.8448 -0.0014 7 6 4.4716 2.8899 -0.0018 8 6 4.7585 1.5643 -0.0017 9 6 3.7063 0.6233 -0.0007 10 7 3.6401 -0.6957 0.0050 11 7 2.2953 -1.0835 -0.0005 12 6 1.8199 -2.4691 -0.0003 13 6 1.6562 -2.9442 -1.4211 14 1 1.8839 -2.2804 -2.2421 15 6 1.2217 -4.2283 -1.6730 16 7 0.9448 -5.0367 -0.6733 17 14 1.0261 -4.8195 -3.4341 18 1 2.3002 -5.4258 -3.8971 19 1 -0.0567 -5.8337 -3.4983 20 1 0.6793 -3.6693 -4.3069 21 1 -0.3633 -0.0002 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 1.0890 2.8998 0.0008 25 1 2.8452 5.2030 -1.0290 26 1 1.9686 5.0558 0.5131 27 1 3.7240 5.3506 0.5118 28 1 5.2829 3.6028 -0.0031 29 1 5.7856 1.2307 -0.0024 30 1 0.8604 -2.5241 0.5140 31 1 2.5441 -3.1017 0.5130 32 1 0.6387 -5.9400 -0.8504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 54.906608 kcal Electronic energy + Delta-G solvation = -15248.776712 eV Core-core repulsion = 12788.326870 eV Total energy + Delta-G solvation = -2460.449842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.16283 -38.60093 -35.62726 -34.17455 -32.92147 -31.79127 -29.84586 -28.41202 -26.35517 -25.50836 -23.20814 -21.99215 -20.34582 -18.90860 -17.86576 -17.37865 -16.49499 -16.13539 -15.85414 -15.11974 -14.89400 -14.53624 -14.16218 -13.92537 -13.81986 -13.65157 -13.24822 -13.02229 -12.83264 -12.75531 -12.48938 -12.30533 -12.18899 -12.15133 -11.50169 -11.05243 -10.85645 -10.80109 -9.43466 -8.43269 -8.29774 -6.59640 -0.12614 0.97272 1.34379 1.35875 1.46022 1.59422 1.73589 2.29901 2.89548 2.98354 3.40388 3.74962 4.11984 4.17765 4.20603 4.53388 4.61875 4.65215 4.69419 4.75511 4.78974 4.95710 5.01628 5.04723 5.13278 5.28310 5.39981 5.46829 5.61684 5.68608 5.76870 5.86687 6.06542 6.24043 6.50102 6.91572 7.11763 8.65931 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041768 B = 0.006192 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.211444 B = 4520.730434 C = 4653.583755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.098 3.902 3 C -0.237 4.237 4 C -0.041 4.041 5 C -0.146 4.146 6 C -0.098 4.098 7 C -0.064 4.064 8 C -0.133 4.133 9 C 0.062 3.938 10 N -0.372 5.372 11 N -0.299 5.299 12 C 0.261 3.739 13 C -0.558 4.558 14 H 0.049 0.951 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.974 3.026 18 H -0.276 1.276 19 H -0.266 1.266 20 H -0.268 1.268 21 H 0.099 0.901 22 H 0.111 0.889 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 16.464 1.002 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.247 4.247 4 C -0.061 4.061 5 C -0.148 4.148 6 C -0.154 4.154 7 C -0.086 4.086 8 C -0.155 4.155 9 C -0.090 4.090 10 N -0.200 5.200 11 N -0.072 5.072 12 C 0.143 3.857 13 C -0.596 4.596 14 H 0.067 0.933 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.798 3.202 18 H -0.201 1.201 19 H -0.191 1.191 20 H -0.193 1.193 21 H 0.117 0.883 22 H 0.129 0.871 23 H 0.088 0.912 24 H 0.163 0.837 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.353 14.953 1.075 14.996 hybrid contribution -0.192 -0.606 -0.659 0.916 sum -0.546 14.347 0.416 14.364 Atomic orbital electron populations 1.20607 0.84281 1.05013 1.04581 1.21994 0.96364 0.86415 0.99451 1.19683 0.91581 0.95100 1.18287 1.20359 1.00108 0.88401 0.97241 1.19620 0.92316 0.97517 1.05331 1.20716 1.03102 0.88910 1.02712 1.20875 0.97464 0.94025 0.96210 1.20067 0.96214 0.91836 1.07357 1.21570 0.96217 0.91094 1.00086 1.77593 0.96120 1.13245 1.33089 1.49215 1.03534 1.08379 1.46064 1.19479 0.95054 0.72682 0.98513 1.21326 1.47814 0.99264 0.91152 0.93302 1.25745 0.93636 0.95666 1.02523 1.69996 1.44121 1.08016 1.33123 0.85309 0.78349 0.78326 0.78246 1.20126 1.19083 1.19271 0.88284 0.87074 0.91178 0.83718 0.90896 0.90902 0.90492 0.82619 0.85441 0.92224 0.95620 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.83 71.24 0.70 -2.00 16 2 C 0.10 4.06 6.98 42.23 0.29 4.36 16 3 C -0.24 -9.29 6.26 -20.23 -0.13 -9.41 16 4 C -0.04 -1.21 9.66 22.38 0.22 -0.99 16 5 C -0.15 -3.70 5.84 -20.11 -0.12 -3.82 16 6 C -0.10 -1.57 9.96 71.24 0.71 -0.86 16 7 C -0.06 -1.70 9.51 22.02 0.21 -1.49 16 8 C -0.13 -4.64 10.08 22.38 0.23 -4.41 16 9 C 0.06 2.73 7.49 42.16 0.32 3.04 16 10 N -0.37 -19.19 12.54 -48.70 -0.61 -19.80 16 11 N -0.30 -14.95 3.53 -336.75 -1.19 -16.14 16 12 C 0.26 14.04 5.69 85.64 0.49 14.52 16 13 C -0.56 -31.57 9.39 25.60 0.24 -31.33 16 14 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 15 C 0.03 1.42 5.46 84.66 0.46 1.88 16 16 N -0.91 -51.55 13.29 21.45 0.28 -51.26 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 22 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 23 H 0.07 2.45 7.60 -2.39 -0.02 2.43 16 24 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 27 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 28 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.06 3.10 7.51 -2.38 -0.02 3.08 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -68.71 280.48 5.23 -63.47 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.10 Total: 9.20 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.62 Total: -30.51 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.52 Total: -87.20 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.71 5.23 -63.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.381 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds