Wall clock time and date at job start Mon Mar 30 2020 03:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38248 * 126.04421 * 2 1 4 4 C 1.47135 * 106.41119 * 180.22602 * 3 2 1 5 5 C 1.41158 * 118.55008 * 179.75051 * 4 3 2 6 6 C 1.35637 * 119.60073 * 0.02562 * 5 4 3 7 7 C 1.39683 * 121.81823 * 359.97438 * 6 5 4 8 8 C 1.35660 * 121.72252 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.22843 * 180.02562 * 8 7 6 10 10 N 1.32054 * 106.76344 * 359.76887 * 4 3 2 11 11 N 1.33990 * 126.04478 * 179.82226 * 2 1 3 12 12 C 1.46491 * 125.02214 * 0.02881 * 11 2 1 13 13 C 1.50702 * 109.46957 * 269.71660 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.08995 * 109.47578 * 270.19877 * 1 2 3 22 22 H 1.09003 * 109.46824 * 30.20459 * 1 2 3 23 23 H 1.09003 * 109.47258 * 150.19821 * 1 2 3 24 24 H 1.08007 * 120.19833 * 180.02562 * 5 4 3 25 25 H 1.08003 * 119.08895 * 179.97438 * 6 5 4 26 26 H 1.07995 * 119.13874 * 179.97438 * 7 6 5 27 27 H 1.09001 * 109.46829 * 90.00881 * 9 8 7 28 28 H 1.09002 * 109.46759 * 210.00108 * 9 8 7 29 29 H 1.08995 * 109.47275 * 330.00515 * 9 8 7 30 30 H 1.09004 * 109.47166 * 149.71926 * 12 11 2 31 31 H 1.08994 * 109.47507 * 29.71632 * 12 11 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1178 0.0000 4 6 3.7063 0.6235 -0.0056 5 6 4.7583 1.5646 -0.0121 6 6 4.4713 2.8903 -0.0126 7 6 3.1554 3.3589 -0.0073 8 6 2.0963 2.5112 -0.0019 9 6 0.6903 3.0536 0.0031 10 7 3.6402 -0.6954 -0.0033 11 7 2.2954 -1.0834 0.0034 12 6 1.8201 -2.4690 0.0071 13 6 1.6632 -2.9424 1.4292 14 1 1.8941 -2.2775 2.2483 15 6 1.2190 -4.2225 1.6846 16 7 0.9375 -5.0321 0.6871 17 14 1.0172 -4.8067 3.4473 18 1 -0.3590 -4.5026 3.9151 19 1 1.2497 -6.2720 3.5128 20 1 2.0003 -4.1103 4.3154 21 1 -0.3634 0.0036 1.0276 22 1 -0.3633 0.8882 -0.5170 23 1 -0.3634 -0.8918 -0.5108 24 1 5.7856 1.2312 -0.0167 25 1 5.2826 3.6032 -0.0173 26 1 2.9765 4.4239 -0.0075 27 1 0.3471 3.1829 -1.0233 28 1 0.0332 2.3546 0.5206 29 1 0.6738 4.0153 0.5157 30 1 2.5419 -3.1021 -0.5091 31 1 0.8583 -2.5246 -0.5026 32 1 0.6254 -5.9328 0.8668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:02 Heat of formation + Delta-G solvation = 56.818854 kcal Electronic energy + Delta-G solvation = -15448.533122 eV Core-core repulsion = 12988.166201 eV Total energy + Delta-G solvation = -2460.366921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20720 -38.42444 -35.57565 -34.73288 -32.88915 -31.73757 -29.22661 -28.29684 -27.18813 -25.46582 -22.92652 -22.26717 -19.90508 -18.91487 -18.07118 -17.45813 -16.51868 -16.22609 -16.01453 -15.09626 -14.57893 -14.46057 -14.23588 -14.00309 -13.84500 -13.71911 -13.29461 -13.09306 -12.91232 -12.68044 -12.48633 -12.33643 -12.27006 -11.92714 -11.60295 -11.02189 -10.79697 -10.73368 -9.42975 -8.42875 -8.33094 -6.59917 -0.12034 1.01292 1.33591 1.35546 1.45576 1.58845 1.72969 2.29504 2.89169 3.00543 3.41990 3.73978 4.11971 4.13207 4.25511 4.47880 4.56280 4.59309 4.67297 4.77686 4.81465 4.92583 4.94970 4.99257 5.09016 5.24856 5.41406 5.51426 5.68233 5.70232 5.72526 5.87849 6.06296 6.26576 6.49654 6.92257 7.11398 8.65622 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.006956 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.999261 B = 4024.597610 C = 4306.692063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.103 3.897 3 C -0.239 4.239 4 C 0.067 3.933 5 C -0.149 4.149 6 C -0.060 4.060 7 C -0.185 4.185 8 C -0.007 4.007 9 C -0.120 4.120 10 N -0.375 5.375 11 N -0.301 5.301 12 C 0.261 3.739 13 C -0.557 4.557 14 H 0.049 0.951 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.974 3.026 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.278 1.278 21 H 0.091 0.909 22 H 0.118 0.882 23 H 0.071 0.929 24 H 0.124 0.876 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 15.820 -1.044 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C -0.249 4.249 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.204 4.204 8 C -0.009 4.009 9 C -0.176 4.176 10 N -0.203 5.203 11 N -0.073 5.073 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.067 0.933 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.797 3.203 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.203 1.203 21 H 0.109 0.891 22 H 0.136 0.864 23 H 0.090 0.910 24 H 0.142 0.858 25 H 0.175 0.825 26 H 0.171 0.829 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.788 14.299 -1.110 14.453 hybrid contribution -0.047 -0.567 0.654 0.867 sum -1.835 13.732 -0.456 13.862 Atomic orbital electron populations 1.20752 0.84398 1.04953 1.04524 1.21957 0.96265 0.86394 0.99050 1.19583 0.91562 0.94659 1.19112 1.21583 0.96205 0.91074 0.99571 1.20043 0.96074 0.92019 1.08886 1.20963 0.98099 0.93966 0.95147 1.20699 0.91430 1.00453 1.07804 1.19457 0.98048 0.88713 0.94678 1.21038 0.91013 1.02028 1.03567 1.77602 0.96064 1.13246 1.33395 1.49204 1.03571 1.08376 1.46142 1.19479 0.95063 0.72683 0.98509 1.21319 1.47591 0.99487 0.91143 0.93315 1.25747 0.93644 0.95636 1.02564 1.69996 1.43946 1.08164 1.33192 0.85314 0.79169 0.77665 0.78124 1.18369 1.19701 1.20317 0.89058 0.86373 0.91045 0.85766 0.82468 0.82874 0.89450 0.91058 0.89066 0.95684 0.92179 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.74 8.89 71.24 0.63 -2.11 16 2 C 0.10 4.29 6.98 42.23 0.29 4.59 16 3 C -0.24 -9.40 6.12 -20.23 -0.12 -9.52 16 4 C 0.07 2.99 7.49 42.16 0.32 3.31 16 5 C -0.15 -5.25 10.08 22.38 0.23 -5.02 16 6 C -0.06 -1.60 9.89 22.02 0.22 -1.38 16 7 C -0.18 -4.65 9.54 22.02 0.21 -4.44 16 8 C -0.01 -0.19 5.89 -19.75 -0.12 -0.31 16 9 C -0.12 -2.39 9.04 71.24 0.64 -1.74 16 10 N -0.37 -19.47 12.54 -48.70 -0.61 -20.09 16 11 N -0.30 -15.06 3.53 -336.74 -1.19 -16.25 16 12 C 0.26 14.06 5.90 85.64 0.51 14.56 16 13 C -0.56 -31.63 9.39 25.60 0.24 -31.39 16 14 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 15 C 0.03 1.41 5.46 84.66 0.46 1.87 16 16 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 22 H 0.12 2.69 6.10 -2.39 -0.01 2.68 16 23 H 0.07 2.30 6.94 -2.39 -0.02 2.28 16 24 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 25 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.43 5.80 -2.39 -0.01 1.41 16 29 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 3.12 6.89 -2.39 -0.02 3.11 16 32 H 0.28 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -69.63 273.43 5.14 -64.49 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.12 Total: 9.71 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 3.51 Total: -31.58 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -1.52 Total: -87.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.63 5.14 -64.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.308 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds